CmoCh19G005200 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAAGTAAGATTATTTTTATTGGTTATTATGTAATGTTACAAGAGTATCTACTAGCCGACCTGACGTGTTATACCACCCGATGTTAGATAAGTATTCATTAGGGTAAGAAGGGAATTGACTGAAGGTATATAAAGGCCGAGCTGTCAACGGGGCAGGTCAGGTCACTAATTTTAGATGAGTATTTATTAGCGTAAGAAGGAGATTGAGCGAAAGTATATAAAGACTGAGATGTTAATGGAGCAGGACCACTATGATTTTTTATCTTTTTAATCTTTCTAAAAAAGATTAAAATTTTTACCCTTTCTTTAAATTATTTATCTCAATTCACAATTGACATTTTAGAACATTTTTTTTACATAAATGTGCTGATATGATTTTTGGAGGATTAACGTGGGTAATTATTGAAACAATTGGATTACCAAGGCACCACTATTTGATTTCAAGGTAATTTTATTTATTATTCGAACAAGTTATTTCTTCAATTATCCTTAATGATATATTTGAATAATGTAATTACTTCTTACATTTCAATTGTAGCTCTCTTTTGATACAACATTTATTGGAGTAGCGTTTTGATTTGGTGCATTTTGCTTCAAAAACATGTACGACTTCCTAGTTTTTTTCTCATTTGGCGAGCTGCTACTGTTTGACACACACGTATACTATTCTTTTATACAAAGTTATAGCCTACTTCTATCTGACGTGACATTAGTAAAGACATAGTCATCGATATTCATCTAAGGATAAAAAGGAGATCGACATTACGGAGTATAAAGACCTAGCCAATTATAAACTTCACTAGGGAGTCAAATTAAGAAAGTTAGAATGTCATGTAATTTTGGATGCATAGTCGACCAAACCCAAAAGCCTGAGCTAATGTGTTAGTCTATATTTAATATTTTTGTATCGATTCTTTAGCTAATTACTTCTCTGATCGCAGGGTCCGATAAACTTCGTGTGCCTACATTGCATGATGCCTAGTCTAAGGCCGCTTTCTATGGCTATGTTCACAGTTCCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACACCTAGTCTAAGGCCTCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGTTAGTTGTTTAGAAGTTAAGTCTATTCTATATGTTTTTAGTTAAAAGTTTTAACAATGTTTTATTAACTCATATTAATGATTGTGTAGGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTGTATGGTCAATAGATAAACGTTAGGACACATGGACATATGACAACACGAACACATAATTTCTAAAAAGTAGGCCACAACATGTTAGAGACGATATCTAAGGTTAAACATCGAATGAGAATACTGTTCATTCTTTGCATTAAATTAATTTGTTGACCTATGCTCCGGTGGGCATTAGCTTTGCTTTTTATGGATATCGATGAGTTGTTTTCTTCCCATTTTTAAAAATATGTCATAACTAGATCGAATGCTTGCTCATGCAAATCCATGTTGAAATCGATATTATGTTTGAGTATCTATCTCTATTAGAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAATTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAATTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG
BLAST of CmoCh19G005200 vs. Swiss-Prot
Match: SPNS3_ARATH (Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 9.9e-15 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. Swiss-Prot
Match: SPNS2_ARATH (Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12 Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1
BLAST of CmoCh19G005200 vs. Swiss-Prot
Match: SPNS1_ARATH (Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 5.1e-11 Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1
BLAST of CmoCh19G005200 vs. TrEMBL
Match: G7JTZ9_MEDTR (Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula GN=MTR_4g092770 PE=4 SV=2) HSP 1 Score: 83.2 bits (204), Expect = 2.9e-13 Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. TrEMBL
Match: D7LE31_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_320107 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. TrEMBL
Match: R0G1Z9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025591mg PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. TrEMBL
Match: D7SSI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0205g00120 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. TrEMBL
Match: A0A061DH97_THECC (Major facilitator superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_000899 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12 Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
BLAST of CmoCh19G005200 vs. TAIR10
Match: AT2G22730.1 (AT2G22730.1 Major facilitator superfamily protein) HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. TAIR10
Match: AT5G64500.1 (AT5G64500.1 Major facilitator superfamily protein) HSP 1 Score: 73.9 bits (180), Expect = 8.9e-14 Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1
BLAST of CmoCh19G005200 vs. TAIR10
Match: AT5G65687.1 (AT5G65687.1 Major facilitator superfamily protein) HSP 1 Score: 68.9 bits (167), Expect = 2.9e-12 Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1
BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|922363434|ref|XP_003608336.2| (sphingolipid transporter spinster-like protein, putative [Medicago truncatula]) HSP 1 Score: 83.2 bits (204), Expect = 4.2e-13 Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|30681799|ref|NP_179858.2| (major facilitator protein [Arabidopsis thaliana]) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|4314370|gb|AAD15581.1| (hypothetical protein [Arabidopsis thaliana]) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|727506178|ref|XP_010429201.1| (PREDICTED: probable sphingolipid transporter spinster homolog 3 isoform X3 [Camelina sativa]) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|565477545|ref|XP_006296413.1| (hypothetical protein CARUB_v10025591mg [Capsella rubella]) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12 Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |