CmoCh19G005200 (gene) Cucurbita moschata (Rifu)

NameCmoCh19G005200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSphingolipid transporter spinster-like protein, putative
LocationCmo_Chr19 : 6111332 .. 6113264 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAAGTAAGATTATTTTTATTGGTTATTATGTAATGTTACAAGAGTATCTACTAGCCGACCTGACGTGTTATACCACCCGATGTTAGATAAGTATTCATTAGGGTAAGAAGGGAATTGACTGAAGGTATATAAAGGCCGAGCTGTCAACGGGGCAGGTCAGGTCACTAATTTTAGATGAGTATTTATTAGCGTAAGAAGGAGATTGAGCGAAAGTATATAAAGACTGAGATGTTAATGGAGCAGGACCACTATGATTTTTTATCTTTTTAATCTTTCTAAAAAAGATTAAAATTTTTACCCTTTCTTTAAATTATTTATCTCAATTCACAATTGACATTTTAGAACATTTTTTTTACATAAATGTGCTGATATGATTTTTGGAGGATTAACGTGGGTAATTATTGAAACAATTGGATTACCAAGGCACCACTATTTGATTTCAAGGTAATTTTATTTATTATTCGAACAAGTTATTTCTTCAATTATCCTTAATGATATATTTGAATAATGTAATTACTTCTTACATTTCAATTGTAGCTCTCTTTTGATACAACATTTATTGGAGTAGCGTTTTGATTTGGTGCATTTTGCTTCAAAAACATGTACGACTTCCTAGTTTTTTTCTCATTTGGCGAGCTGCTACTGTTTGACACACACGTATACTATTCTTTTATACAAAGTTATAGCCTACTTCTATCTGACGTGACATTAGTAAAGACATAGTCATCGATATTCATCTAAGGATAAAAAGGAGATCGACATTACGGAGTATAAAGACCTAGCCAATTATAAACTTCACTAGGGAGTCAAATTAAGAAAGTTAGAATGTCATGTAATTTTGGATGCATAGTCGACCAAACCCAAAAGCCTGAGCTAATGTGTTAGTCTATATTTAATATTTTTGTATCGATTCTTTAGCTAATTACTTCTCTGATCGCAGGGTCCGATAAACTTCGTGTGCCTACATTGCATGATGCCTAGTCTAAGGCCGCTTTCTATGGCTATGTTCACAGTTCCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACACCTAGTCTAAGGCCTCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGTTAGTTGTTTAGAAGTTAAGTCTATTCTATATGTTTTTAGTTAAAAGTTTTAACAATGTTTTATTAACTCATATTAATGATTGTGTAGGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTGTATGGTCAATAGATAAACGTTAGGACACATGGACATATGACAACACGAACACATAATTTCTAAAAAGTAGGCCACAACATGTTAGAGACGATATCTAAGGTTAAACATCGAATGAGAATACTGTTCATTCTTTGCATTAAATTAATTTGTTGACCTATGCTCCGGTGGGCATTAGCTTTGCTTTTTATGGATATCGATGAGTTGTTTTCTTCCCATTTTTAAAAATATGTCATAACTAGATCGAATGCTTGCTCATGCAAATCCATGTTGAAATCGATATTATGTTTGAGTATCTATCTCTATTAGAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG

mRNA sequence

ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAATTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG

Coding sequence (CDS)

ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAATTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG
BLAST of CmoCh19G005200 vs. Swiss-Prot
Match: SPNS3_ARATH (Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 455

BLAST of CmoCh19G005200 vs. Swiss-Prot
Match: SPNS2_ARATH (Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+NF+ LHCV PSLRPL+M+MST++I IFGDVPSS LVGV++D+ N
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDYVN 430

BLAST of CmoCh19G005200 vs. Swiss-Prot
Match: SPNS1_ARATH (Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-11
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDH 82
           P+NFVCLHCV P+LRPLSM+ ST+ I I GDVPSS L G ++DH
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQDH 434

BLAST of CmoCh19G005200 vs. TrEMBL
Match: G7JTZ9_MEDTR (Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula GN=MTR_4g092770 PE=4 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-13
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+NFVCLHCV PSLRPLSM+MST+AI IFGDVPS+ LVGVV+DH N
Sbjct: 420 PVNFVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSAPLVGVVQDHIN 465

BLAST of CmoCh19G005200 vs. TrEMBL
Match: D7LE31_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_320107 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 409 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 454

BLAST of CmoCh19G005200 vs. TrEMBL
Match: R0G1Z9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025591mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 395 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 440

BLAST of CmoCh19G005200 vs. TrEMBL
Match: D7SSI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0205g00120 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM+MST+AI IFGDVPSS LVG+++DH N
Sbjct: 424 PVNYVCLHCVRPSLRPLSMAMSTVAIHIFGDVPSSPLVGILQDHVN 469

BLAST of CmoCh19G005200 vs. TrEMBL
Match: A0A061DH97_THECC (Major facilitator superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_000899 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1

Query: 25  CTFGSGINCNSHLPINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           C  G  +   +  P+N+VCLHCV PSLRPLSM++ST++I IFGDVPSS LVGV++DH N
Sbjct: 296 CKLGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVSIHIFGDVPSSPLVGVLQDHVN 354

BLAST of CmoCh19G005200 vs. TAIR10
Match: AT2G22730.1 (AT2G22730.1 Major facilitator superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 455

BLAST of CmoCh19G005200 vs. TAIR10
Match: AT5G64500.1 (AT5G64500.1 Major facilitator superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 8.9e-14
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+NF+ LHCV PSLRPL+M+MST++I IFGDVPSS LVGV++D+ N
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDYVN 430

BLAST of CmoCh19G005200 vs. TAIR10
Match: AT5G65687.1 (AT5G65687.1 Major facilitator superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-12
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDH 82
           P+NFVCLHCV P+LRPLSM+ ST+ I I GDVPSS L G ++DH
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQDH 434

BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|922363434|ref|XP_003608336.2| (sphingolipid transporter spinster-like protein, putative [Medicago truncatula])

HSP 1 Score: 83.2 bits (204), Expect = 4.2e-13
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+NFVCLHCV PSLRPLSM+MST+AI IFGDVPS+ LVGVV+DH N
Sbjct: 420 PVNFVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSAPLVGVVQDHIN 465

BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|30681799|ref|NP_179858.2| (major facilitator protein [Arabidopsis thaliana])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 455

BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|4314370|gb|AAD15581.1| (hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 455

BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|727506178|ref|XP_010429201.1| (PREDICTED: probable sphingolipid transporter spinster homolog 3 isoform X3 [Camelina sativa])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 373 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 418

BLAST of CmoCh19G005200 vs. NCBI nr
Match: gi|565477545|ref|XP_006296413.1| (hypothetical protein CARUB_v10025591mg [Capsella rubella])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1

Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 395 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 440

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SPNS3_ARATH9.9e-1576.09Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=... [more]
SPNS2_ARATH1.6e-1269.57Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=... [more]
SPNS1_ARATH5.1e-1168.18Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=... [more]
Match NameE-valueIdentityDescription
G7JTZ9_MEDTR2.9e-1380.43Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula ... [more]
D7LE31_ARALL1.1e-1276.09Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
R0G1Z9_9BRAS1.1e-1276.09Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025591mg PE=4 SV=1[more]
D7SSI1_VITVI1.1e-1276.09Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0205g00120 PE=4 SV=... [more]
A0A061DH97_THECC1.9e-1261.02Major facilitator superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_000899... [more]
Match NameE-valueIdentityDescription
AT2G22730.15.6e-1676.09 Major facilitator superfamily protein[more]
AT5G64500.18.9e-1469.57 Major facilitator superfamily protein[more]
AT5G65687.12.9e-1268.18 Major facilitator superfamily protein[more]
Match NameE-valueIdentityDescription
gi|922363434|ref|XP_003608336.2|4.2e-1380.43sphingolipid transporter spinster-like protein, putative [Medicago truncatula][more]
gi|30681799|ref|NP_179858.2|1.6e-1276.09major facilitator protein [Arabidopsis thaliana][more]
gi|4314370|gb|AAD15581.1|1.6e-1276.09hypothetical protein [Arabidopsis thaliana][more]
gi|727506178|ref|XP_010429201.1|1.6e-1276.09PREDICTED: probable sphingolipid transporter spinster homolog 3 isoform X3 [Came... [more]
gi|565477545|ref|XP_006296413.1|1.6e-1276.09hypothetical protein CARUB_v10025591mg [Capsella rubella][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G005200.1CmoCh19G005200.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23505FAMILY NOT NAMEDcoord: 38..121
score: 2.7
NoneNo IPR availablePANTHERPTHR23505:SF17SUBFAMILY NOT NAMEDcoord: 38..121
score: 2.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G005200Lsi03G009910Bottle gourd (USVL1VR-Ls)cmolsiB467
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G005200Cucumber (Gy14) v2cgybcmoB928
CmoCh19G005200Cucumber (Gy14) v2cgybcmoB934
CmoCh19G005200Melon (DHL92) v3.6.1cmomedB517
CmoCh19G005200Melon (DHL92) v3.6.1cmomedB523
CmoCh19G005200Melon (DHL92) v3.6.1cmomedB550
CmoCh19G005200Silver-seed gourdcarcmoB0513
CmoCh19G005200Silver-seed gourdcarcmoB0615
CmoCh19G005200Silver-seed gourdcarcmoB0998
CmoCh19G005200Cucumber (Chinese Long) v3cmocucB0612
CmoCh19G005200Cucumber (Chinese Long) v3cmocucB0623
CmoCh19G005200Cucumber (Chinese Long) v3cmocucB0629
CmoCh19G005200Watermelon (97103) v2cmowmbB505
CmoCh19G005200Watermelon (97103) v2cmowmbB537
CmoCh19G005200Wax gourdcmowgoB0635
CmoCh19G005200Wax gourdcmowgoB0642
CmoCh19G005200Cucurbita moschata (Rifu)cmocmoB110
CmoCh19G005200Cucurbita moschata (Rifu)cmocmoB395
CmoCh19G005200Cucumber (Gy14) v1cgycmoB0627
CmoCh19G005200Cucumber (Gy14) v1cgycmoB0629
CmoCh19G005200Cucumber (Gy14) v1cgycmoB0909
CmoCh19G005200Cucurbita maxima (Rimu)cmacmoB143
CmoCh19G005200Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G005200Wild cucumber (PI 183967)cmocpiB515
CmoCh19G005200Wild cucumber (PI 183967)cmocpiB525
CmoCh19G005200Wild cucumber (PI 183967)cmocpiB531
CmoCh19G005200Cucumber (Chinese Long) v2cmocuB519
CmoCh19G005200Cucumber (Chinese Long) v2cmocuB525
CmoCh19G005200Melon (DHL92) v3.5.1cmomeB448
CmoCh19G005200Melon (DHL92) v3.5.1cmomeB454
CmoCh19G005200Melon (DHL92) v3.5.1cmomeB475
CmoCh19G005200Watermelon (Charleston Gray)cmowcgB448
CmoCh19G005200Watermelon (Charleston Gray)cmowcgB454
CmoCh19G005200Watermelon (97103) v1cmowmB471
CmoCh19G005200Watermelon (97103) v1cmowmB478
CmoCh19G005200Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G005200Cucurbita pepo (Zucchini)cmocpeB488
CmoCh19G005200Cucurbita pepo (Zucchini)cmocpeB494
CmoCh19G005200Bottle gourd (USVL1VR-Ls)cmolsiB468