CmoCh19G003470.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTATTGTCGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCAAGGATGACTTGCAATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGATATTGATAAAGTGCACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAGCTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAAAGTTGAAATTTTTTAG ATGGCTATTGTCGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCAAGGATGACTTGCAATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGATATTGATAAAGTGCACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAGCTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAAAGTTGAAATTTTTTAG ATGGCTATTGTCGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCAAGGATGACTTGCAATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGATATTGATAAAGTGCACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAGCTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAAAGTTGAAATTTTTTAG
BLAST of CmoCh19G003470.1 vs. TrEMBL
Match: A5C5R8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032383 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40 Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. TrEMBL
Match: A5B060_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011221 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 3.6e-40 Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. TrEMBL
Match: A5B2A6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009561 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 4.0e-39 Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. TrEMBL
Match: A5BU87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031653 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 5.9e-35 Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. TrEMBL
Match: A5CAZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002539 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33 Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. TAIR10
Match: AT1G34070.1 (AT1G34070.1 Retrotransposon gag protein (InterPro:IPR005162)) HSP 1 Score: 54.3 bits (129), Expect = 5.5e-08 Identity = 32/101 (31.68%), Postives = 48/101 (47.52%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. NCBI nr
Match: gi|147785835|emb|CAN73071.1| (hypothetical protein VITISV_032383 [Vitis vinifera]) HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40 Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. NCBI nr
Match: gi|147774053|emb|CAN65114.1| (hypothetical protein VITISV_011221 [Vitis vinifera]) HSP 1 Score: 172.2 bits (435), Expect = 5.1e-40 Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. NCBI nr
Match: gi|147797902|emb|CAN69607.1| (hypothetical protein VITISV_009561 [Vitis vinifera]) HSP 1 Score: 168.7 bits (426), Expect = 5.7e-39 Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. NCBI nr
Match: gi|147862647|emb|CAN83592.1| (hypothetical protein VITISV_031653 [Vitis vinifera]) HSP 1 Score: 154.8 bits (390), Expect = 8.5e-35 Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 1
BLAST of CmoCh19G003470.1 vs. NCBI nr
Match: gi|147843564|emb|CAN79884.1| (hypothetical protein VITISV_002539 [Vitis vinifera]) HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33 Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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