CmoCh19G003470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G003470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon like protein
LocationCmo_Chr19 : 2891313 .. 2891645 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATTGTCGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCAAGGATGACTTGCAATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGATATTGATAAAGTGCACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAGCTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAAAGTTGAAATTTTTTAG

mRNA sequence

ATGGCTATTGTCGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCAAGGATGACTTGCAATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGATATTGATAAAGTGCACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAGCTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAAAGTTGAAATTTTTTAG

Coding sequence (CDS)

ATGGCTATTGTCGTTGGTCTCTCTACTGCACGTGATGTTCGGCTTGCGTTGGAAACTGCGTTCAACCATCATTCGAAAGCTTGTGAACTGAGACTCAAGGATGACTTGCAATTGATGAAACATGGCATCAAACCTGTTGCTGCGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTTATGCCATTGGCAGACCCGTCGAGGATATTGATAAAGTGCACTGGTTCCTTCGTGGACTTGGCACAGAATTTTCAGCTTTTTCTACTGCTCAGATAGCTCTCACACCTATCCCTTGTTTTGTAGATTTAGTCTCTAAAGTTGAAATTTTTTAG
Homology
[Close]
BLAST of CmoCh19G003470 vs. TrEMBL
Match: A5C5R8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032383 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           +A+VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL
Sbjct: 92  IAVVVGLSTAREVWLALENTFSHHSKARELRLKDDLQLMKRGTKPVAEYARTFKTLCDQL 151

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
           +AIGRPVED DKVHWF RGLG +FS+FSTAQ++LTP+P F DLVSK E F
Sbjct: 152 HAIGRPVEDTDKVHWFFRGLGPDFSSFSTAQMSLTPLPYFADLVSKAESF 201

[Close]
BLAST of CmoCh19G003470 vs. TrEMBL
Match: A5B060_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011221 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-40
Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           +A VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL
Sbjct: 92  IAAVVGLSTAREVWLALENTFSHHSKARELRLKDDLQLMKRGTKPVAEYARTFKTLCDQL 151

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
           +AIGRPVED +KVHWFLRGL T+FS+FSTAQ+ALTP+P F DLVSK E F
Sbjct: 152 HAIGRPVEDTNKVHWFLRGLDTDFSSFSTAQMALTPLPYFADLVSKAESF 201

[Close]
BLAST of CmoCh19G003470 vs. TrEMBL
Match: A5B2A6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009561 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.0e-39
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           +A VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK   KPVA +AR FK +CDQL
Sbjct: 92  IATVVGLSTAREVWLALENTFSHHSKARELRLKDDLQLMKRSTKPVAEHARTFKTLCDQL 151

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
           +AIGRPVED DKVHWFLRGLGT+FS+FSTAQ+ALT +P F DLVSK E F
Sbjct: 152 HAIGRPVEDTDKVHWFLRGLGTDFSSFSTAQMALTLLPYFADLVSKAESF 201

[Close]
BLAST of CmoCh19G003470 vs. TrEMBL
Match: A5BU87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031653 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-35
Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           MA VV LST+R+V +ALE  F+H SKA E+RLKDDLQLMK G + V+ YARAFK +C+QL
Sbjct: 93  MAEVVELSTSREVWVALENTFSHRSKAREIRLKDDLQLMKRGTRSVSEYARAFKALCNQL 152

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
           +AIGRPV+  D+VHWFLRGLG+EFS FSTAQ+ALT +PCF DLV K E F
Sbjct: 153 HAIGRPVDGTDEVHWFLRGLGSEFSCFSTAQMALTLLPCFADLVPKAESF 202

[Close]
BLAST of CmoCh19G003470 vs. TrEMBL
Match: A5CAZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002539 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           M  V+GL+TARDV LALE +F+H SK CELR+KDDLQL+K G + V  Y+R+FK +CDQL
Sbjct: 91  MTEVLGLTTARDVWLALENSFSHISKTCELRIKDDLQLIKRGTRSVTEYSRSFKALCDQL 150

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
            A+GR V+D DKVHW+LRGLG +F+ FSTAQ++LTP+P F DLV K E F
Sbjct: 151 TAMGRSVDDTDKVHWYLRGLGADFANFSTAQMSLTPLPVFKDLVPKAESF 200

[Close]
BLAST of CmoCh19G003470 vs. TAIR10
Match: AT1G34070.1 (AT1G34070.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-08
Identity = 32/101 (31.68%), Postives = 48/101 (47.52%), Query Frame = 1 

Query: 8   STARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQLYAIGRPV 67
           ST+RD+ L ++  F ++  A  LRL  +L+    G   VA Y R  KK+ D L  +  PV
Sbjct: 93  STSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPV 152

Query: 68  EDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVE 109
            D + V + L GL  +F           P P F D  + ++
Sbjct: 153 TDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQ 193

[Close]
BLAST of CmoCh19G003470 vs. NCBI nr
Match: gi|147785835|emb|CAN73071.1| (hypothetical protein VITISV_032383 [Vitis vinifera])

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           +A+VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL
Sbjct: 92  IAVVVGLSTAREVWLALENTFSHHSKARELRLKDDLQLMKRGTKPVAEYARTFKTLCDQL 151

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
           +AIGRPVED DKVHWF RGLG +FS+FSTAQ++LTP+P F DLVSK E F
Sbjct: 152 HAIGRPVEDTDKVHWFFRGLGPDFSSFSTAQMSLTPLPYFADLVSKAESF 201

[Close]
BLAST of CmoCh19G003470 vs. NCBI nr
Match: gi|147774053|emb|CAN65114.1| (hypothetical protein VITISV_011221 [Vitis vinifera])

HSP 1 Score: 172.2 bits (435), Expect = 5.1e-40
Identity = 84/110 (76.36%), Postives = 94/110 (85.45%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           +A VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK G KPVA YAR FK +CDQL
Sbjct: 92  IAAVVGLSTAREVWLALENTFSHHSKARELRLKDDLQLMKRGTKPVAEYARTFKTLCDQL 151

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
           +AIGRPVED +KVHWFLRGL T+FS+FSTAQ+ALTP+P F DLVSK E F
Sbjct: 152 HAIGRPVEDTNKVHWFLRGLDTDFSSFSTAQMALTPLPYFADLVSKAESF 201

[Close]
BLAST of CmoCh19G003470 vs. NCBI nr
Match: gi|147797902|emb|CAN69607.1| (hypothetical protein VITISV_009561 [Vitis vinifera])

HSP 1 Score: 168.7 bits (426), Expect = 5.7e-39
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           +A VVGLSTAR+V LALE  F+HHSKA ELRLKDDLQLMK   KPVA +AR FK +CDQL
Sbjct: 92  IATVVGLSTAREVWLALENTFSHHSKARELRLKDDLQLMKRSTKPVAEHARTFKTLCDQL 151

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
           +AIGRPVED DKVHWFLRGLGT+FS+FSTAQ+ALT +P F DLVSK E F
Sbjct: 152 HAIGRPVEDTDKVHWFLRGLGTDFSSFSTAQMALTLLPYFADLVSKAESF 201

[Close]
BLAST of CmoCh19G003470 vs. NCBI nr
Match: gi|147862647|emb|CAN83592.1| (hypothetical protein VITISV_031653 [Vitis vinifera])

HSP 1 Score: 154.8 bits (390), Expect = 8.5e-35
Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           MA VV LST+R+V +ALE  F+H SKA E+RLKDDLQLMK G + V+ YARAFK +C+QL
Sbjct: 93  MAEVVELSTSREVWVALENTFSHRSKAREIRLKDDLQLMKRGTRSVSEYARAFKALCNQL 152

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
           +AIGRPV+  D+VHWFLRGLG+EFS FSTAQ+ALT +PCF DLV K E F
Sbjct: 153 HAIGRPVDGTDEVHWFLRGLGSEFSCFSTAQMALTLLPCFADLVPKAESF 202

[Close]
BLAST of CmoCh19G003470 vs. NCBI nr
Match: gi|147843564|emb|CAN79884.1| (hypothetical protein VITISV_002539 [Vitis vinifera])

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-33
Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 1   MAIVVGLSTARDVRLALETAFNHHSKACELRLKDDLQLMKHGIKPVAAYARAFKKICDQL 60
           M  V+GL+TARDV LALE +F+H SK CELR+KDDLQL+K G + V  Y+R+FK +CDQL
Sbjct: 91  MTEVLGLTTARDVWLALENSFSHISKTCELRIKDDLQLIKRGTRSVTEYSRSFKALCDQL 150

Query: 61  YAIGRPVEDIDKVHWFLRGLGTEFSAFSTAQIALTPIPCFVDLVSKVEIF 111
            A+GR V+D DKVHW+LRGLG +F+ FSTAQ++LTP+P F DLV K E F
Sbjct: 151 TAMGRSVDDTDKVHWYLRGLGADFANFSTAQMSLTPLPVFKDLVPKAESF 200

The following BLAST results are available for this feature:
BLAST of CmoCh19G003470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G003470 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C5R8_VITVI1.6e-4075.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032383 PE=4 SV=1[more]
A5B060_VITVI3.6e-4076.36Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011221 PE=4 SV=1[more]
A5B2A6_VITVI4.0e-3975.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009561 PE=4 SV=1[more]
A5BU87_VITVI5.9e-3568.18Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031653 PE=4 SV=1[more]
A5CAZ2_VITVI1.9e-3363.64Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002539 PE=4 SV=1[more]
BLAST of CmoCh19G003470 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G34070.15.5e-0831.68 Retrotransposon gag protein (InterPro:IPR005162)[more]
BLAST of CmoCh19G003470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147785835|emb|CAN73071.1|2.3e-4075.45hypothetical protein VITISV_032383 [Vitis vinifera][more]
gi|147774053|emb|CAN65114.1|5.1e-4076.36hypothetical protein VITISV_011221 [Vitis vinifera][more]
gi|147797902|emb|CAN69607.1|5.7e-3975.45hypothetical protein VITISV_009561 [Vitis vinifera][more]
gi|147862647|emb|CAN83592.1|8.5e-3568.18hypothetical protein VITISV_031653 [Vitis vinifera][more]
gi|147843564|emb|CAN79884.1|2.7e-3363.64hypothetical protein VITISV_002539 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G003470.1CmoCh19G003470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 4..90
score: 9.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G003470Cucurbita maxima (Rimu)cmacmoB147
CmoCh19G003470Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G003470Cucurbita maxima (Rimu)cmacmoB510
CmoCh19G003470Cucurbita maxima (Rimu)cmacmoB511
CmoCh19G003470Watermelon (Charleston Gray)cmowcgB444
CmoCh19G003470Watermelon (Charleston Gray)cmowcgB452
CmoCh19G003470Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G003470Bottle gourd (USVL1VR-Ls)cmolsiB466
CmoCh19G003470Silver-seed gourdcarcmoB0450
CmoCh19G003470Watermelon (97103) v2cmowmbB532
CmoCh19G003470Cucurbita moschata (Rifu)cmocmoB109