CmoCh19G003400.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGGTCAATACATATCCACCGGATCGTTAACGTGAGCCAACACGATACAATATTTATGTGTTTGTTTTAATGAGAATTTATATTGCTTATAATAAATTTAATGACAGTAATATGAAGATGGGGGAGAAATATTTACCTTTGAGGGAACTGTAAGCAACAGCTTCTAACGTAAGGTTGTTTTAAAAGTTCACATCCCTCGTTTTATTGGAAGGCAATTTAATTATTTATTTAATTATTATTATTTTTTTAAAAAGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGGTGAGCTTAATTACTTCATTTCTTCCTAATCCTAATTAAGGTTCTTAATCATCGCCCTCGTTCATGCGCACCTTCTCTTTTGCACCTTCTCATTGCTAATAAGGATACAAATTCTTCTAATACAACACCAAACAAGACAATAAGGTAAATATGAATTATAAGACATTTTAATTACGAGTTTCATTTTTGAAGGAACTTAATTGTAACACTCCACCACTAACAAATATTATCAATTTTAGCGTGTTACGTATCGTCTTGTTACATATCGTCGTTAGACTCACAGTTTTAAAATTTATTTGTTACGGAGAGGTTTTCACTCCTTTATTAAAAAAAAAATGTATGTGTGTATCCTATCCACTCCCTTAGGGTCCAGCATCCTCGCTAGCACACCGTTCGGTGTCTTGCTCTGATACTATTTGTAATGGCCCATGACCACCACTAACAAATATTGTCTGTTTTAGCCCGGTTATGTATCGCCGTTCGCTTCATGGTTTTGAAACGTGTCTGCTTAGGAGAAATTTTCACACCCATATAAGAAATGTTTCGTTTTCCTATCCAATGGATGTGGATCTCACATTAAAAGTTTTTAATAGGTTCTTGAATTTACATTTTTGTGTTTCTAATATATTCATGAACTTTAACAAGTGTTTAATAAGTTTTGGAAATGACCCACTATCCAAATCTGTCAAAACAAATAAAGAGAGCATTAGCCTTCAATTCTCTCTGTTGTTATTATGAAAAAACATACCTCTCATGAGTATATATAGTAGAGAAAGTACTAACTAGCTTCGTAAACTTTCTCCTCAAGTTAAGAATTACTGAACGACGATCTTCATCGTTAAAGCATAAAACTTGTCTATCTACTACCAATTCTCCTATAGTTACTCCATAGGTTAGTAACTTATTCTATTATGTCTACTAACAATACCGTTAAAAGTGAGTGACTTACTTAAAAGCTCGTAATAAGTCTCTAAACATTCCATCTTTTATTTTCTTCAAACTTTTGATTTTATATTAATTCATCTATAAACTAGAAAATTTGTTAAACTTCATATGAATGGAAAGTTACAATAAATAAGTCATATACTTATTCAATATTTTTAAAATTGAATTTGTTAAACACGAACATAAAAATTAATTTAGGACAACAATAATAACATTGAACTGATAATTTTTTAATGTTGGTAATGGTGATCTACTTTTTGTAGGGGATGGAGGTCTCCTCCACTGTTTACCGCAACTATNTAAATTGGTAATTTATAATTGGCAGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTGTTCGGGGTTCAATTAATTTTTTTTTTTTAACTTTTTAGTGATAATTAATTTTTTTAATTACTCTTTATTTATTATTATTATTATTATTATTATTATTATTTTGCATTAGTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA
BLAST of CmoCh19G003400.1 vs. TrEMBL
Match: A0A067ESB3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043102mg PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 9.8e-19 Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TrEMBL
Match: A0A0A0LIH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171940 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 4.9e-18 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TrEMBL
Match: A5BK89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025151 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17 Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TrEMBL
Match: F6H8S0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01620 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17 Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TrEMBL
Match: V4S6C3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004346mg PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17 Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TAIR10
Match: AT3G23530.1 (AT3G23530.1 Cyclopropane-fatty-acyl-phospholipid synthase) HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17 Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TAIR10
Match: AT3G23470.1 (AT3G23470.1 Cyclopropane-fatty-acyl-phospholipid synthase) HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17 Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TAIR10
Match: AT3G23510.1 (AT3G23510.1 Cyclopropane-fatty-acyl-phospholipid synthase) HSP 1 Score: 82.4 bits (202), Expect = 2.4e-16 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TAIR10
Match: AT3G23480.2 (AT3G23480.2 Cyclopropane-fatty-acyl-phospholipid synthase) HSP 1 Score: 78.6 bits (192), Expect = 3.4e-15 Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. TAIR10
Match: AT3G23460.1 (AT3G23460.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 50.8 bits (120), Expect = 7.7e-07 Identity = 35/92 (38.04%), Postives = 47/92 (51.09%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. NCBI nr
Match: gi|641835121|gb|KDO54102.1| (hypothetical protein CISIN_1g043102mg [Citrus sinensis]) HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18 Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. NCBI nr
Match: gi|778668690|ref|XP_011649138.1| (PREDICTED: uncharacterized protein LOC101213850 isoform X3 [Cucumis sativus]) HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. NCBI nr
Match: gi|778668684|ref|XP_011649136.1| (PREDICTED: uncharacterized protein LOC101213850 isoform X1 [Cucumis sativus]) HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. NCBI nr
Match: gi|659121471|ref|XP_008460676.1| (PREDICTED: pavine N-methyltransferase-like isoform X3 [Cucumis melo]) HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
BLAST of CmoCh19G003400.1 vs. NCBI nr
Match: gi|778668687|ref|XP_011649137.1| (PREDICTED: uncharacterized protein LOC101213850 isoform X2 [Cucumis sativus]) HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18 Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
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