CmoCh19G003400 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G003400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCyclopropane-fatty-acyl-phospholipid synthase family protein
LocationCmo_Chr19 : 2857355 .. 2859405 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGGTCAATACATATCCACCGGATCGTTAACGTGAGCCAACACGATACAATATTTATGTGTTTGTTTTAATGAGAATTTATATTGCTTATAATAAATTTAATGACAGTAATATGAAGATGGGGGAGAAATATTTACCTTTGAGGGAACTGTAAGCAACAGCTTCTAACGTAAGGTTGTTTTAAAAGTTCACATCCCTCGTTTTATTGGAAGGCAATTTAATTATTTATTTAATTATTATTATTTTTTTAAAAAGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGGTGAGCTTAATTACTTCATTTCTTCCTAATCCTAATTAAGGTTCTTAATCATCGCCCTCGTTCATGCGCACCTTCTCTTTTGCACCTTCTCATTGCTAATAAGGATACAAATTCTTCTAATACAACACCAAACAAGACAATAAGGTAAATATGAATTATAAGACATTTTAATTACGAGTTTCATTTTTGAAGGAACTTAATTGTAACACTCCACCACTAACAAATATTATCAATTTTAGCGTGTTACGTATCGTCTTGTTACATATCGTCGTTAGACTCACAGTTTTAAAATTTATTTGTTACGGAGAGGTTTTCACTCCTTTATTAAAAAAAAAATGTATGTGTGTATCCTATCCACTCCCTTAGGGTCCAGCATCCTCGCTAGCACACCGTTCGGTGTCTTGCTCTGATACTATTTGTAATGGCCCATGACCACCACTAACAAATATTGTCTGTTTTAGCCCGGTTATGTATCGCCGTTCGCTTCATGGTTTTGAAACGTGTCTGCTTAGGAGAAATTTTCACACCCATATAAGAAATGTTTCGTTTTCCTATCCAATGGATGTGGATCTCACATTAAAAGTTTTTAATAGGTTCTTGAATTTACATTTTTGTGTTTCTAATATATTCATGAACTTTAACAAGTGTTTAATAAGTTTTGGAAATGACCCACTATCCAAATCTGTCAAAACAAATAAAGAGAGCATTAGCCTTCAATTCTCTCTGTTGTTATTATGAAAAAACATACCTCTCATGAGTATATATAGTAGAGAAAGTACTAACTAGCTTCGTAAACTTTCTCCTCAAGTTAAGAATTACTGAACGACGATCTTCATCGTTAAAGCATAAAACTTGTCTATCTACTACCAATTCTCCTATAGTTACTCCATAGGTTAGTAACTTATTCTATTATGTCTACTAACAATACCGTTAAAAGTGAGTGACTTACTTAAAAGCTCGTAATAAGTCTCTAAACATTCCATCTTTTATTTTCTTCAAACTTTTGATTTTATATTAATTCATCTATAAACTAGAAAATTTGTTAAACTTCATATGAATGGAAAGTTACAATAAATAAGTCATATACTTATTCAATATTTTTAAAATTGAATTTGTTAAACACGAACATAAAAATTAATTTAGGACAACAATAATAACATTGAACTGATAATTTTTTAATGTTGGTAATGGTGATCTACTTTTTGTAGGGGATGGAGGTCTCCTCCACTGTTTACCGCAACTATNTAAATTGGTAATTTATAATTGGCAGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTGTTCGGGGTTCAATTAATTTTTTTTTTTTAACTTTTTAGTGATAATTAATTTTTTTAATTACTCTTTATTTATTATTATTATTATTATTATTATTATTATTTTGCATTAGTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA

mRNA sequence

ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA

Coding sequence (CDS)

ATGCAGGCACGTAATGTTTTGTCTCTAATAGAAAAAGGAACACGCCTTTTTATTACAAGATTTCTTGTTGTTGAAAAAAAAAAGATAAAATATAATTTATTTTTACGATTACGAGAGAAGCTAGACTTGGGGCTTGCAGGTGCATATATCAATGGAGAATTTTCATTAATGGATAAAGAAGAGGGTCTTCTTAACCTTATTTTGCGAGATGATAGAAGCAGTTGGCACGAATTCATAGAAGATTTCTTTGGTTGTTGTGAATCAGTGTTAGAGGAAAATGGTCTTCTTTTCATATTAGTGCCAGACGAGGAGCATCGGCTAAGTTCTGGTTTTATAAAAGAATATATATTTCCAGGAGAGTGCGTACCGTTATTAAGTAGAATAACAACGGCCATGGCTAGTGCATCAAGGCTTTGGTAA
Homology
[Close]
BLAST of CmoCh19G003400 vs. TrEMBL
Match: A0A067ESB3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043102mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-19
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1 

Query: 69  RDDRSSWHEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECV 128
           R+DRS  HE++E+FFGCCES++ ++GL    FI +PDE   E RLSS F+KEYIFPG C+
Sbjct: 441 RNDRSFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCL 500

Query: 129 PLLSRITTAMASASRLW 140
           P LSRIT+AM++ASRLW
Sbjct: 501 PSLSRITSAMSAASRLW 517

[Close]
BLAST of CmoCh19G003400 vs. TrEMBL
Match: A0A0A0LIH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171940 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-18
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF+EDFFG CESVL ENGL    FI +PDE   E+RLSS FIKEYIFPG C+P LSR+T
Sbjct: 711 HEFMEDFFGSCESVLAENGLFVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPCLSRLT 770

Query: 136 TAMASASRL 139
           TAMA+ASRL
Sbjct: 771 TAMANASRL 779

[Close]
BLAST of CmoCh19G003400 vs. TrEMBL
Match: A5BK89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025151 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HE++E+FFGCCESVL E+GLL   FI +PDE   E+R SS FIKEYIFPG C+P LSR+T
Sbjct: 698 HEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVT 757

Query: 136 TAMASASRL 139
           TAMA+ASRL
Sbjct: 758 TAMAAASRL 766

[Close]
BLAST of CmoCh19G003400 vs. TrEMBL
Match: F6H8S0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01620 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HE++E+FFGCCESVL E+GLL   FI +PDE   E+R SS FIKEYIFPG C+P LSR+T
Sbjct: 527 HEYMEEFFGCCESVLAEDGLLVLQFISIPDERYDEYRRSSDFIKEYIFPGGCLPSLSRVT 586

Query: 136 TAMASASRL 139
           TAMA+ASRL
Sbjct: 587 TAMATASRL 595

[Close]
BLAST of CmoCh19G003400 vs. TrEMBL
Match: V4S6C3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004346mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF+E+FFGCCES+L E+GLL   FI +PDE   E+RLSS FIKEYIFPG C+P LSRIT
Sbjct: 648 HEFMEEFFGCCESMLAEDGLLVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPSLSRIT 707

Query: 136 TAMASASRL 139
           +AM++ASRL
Sbjct: 708 SAMSAASRL 716

[Close]
BLAST of CmoCh19G003400 vs. TAIR10
Match: AT3G23530.1 (AT3G23530.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF+E FF  CE+ L ENGL+   FI +P+E   E+RLSS FIKEYIFPG C+P L+R+T
Sbjct: 710 HEFMEMFFSRCEAALAENGLIVLQFISIPEERYNEYRLSSDFIKEYIFPGGCLPSLARVT 769

Query: 136 TAMASASRL 139
           TAM+S+SRL
Sbjct: 770 TAMSSSSRL 778

[Close]
BLAST of CmoCh19G003400 vs. TAIR10
Match: AT3G23470.1 (AT3G23470.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPD---EEHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF++ FF CCE  L ENG+    F  +P+   +E RL+SGFI EYIFPG C+P L+R+T
Sbjct: 302 HEFMDKFFSCCEDALAENGIFVLQFTAIPEALYDESRLTSGFITEYIFPGGCLPSLARVT 361

Query: 136 TAMASASRL 139
           +AMAS+SRL
Sbjct: 362 SAMASSSRL 370

[Close]
BLAST of CmoCh19G003400 vs. TAIR10
Match: AT3G23510.1 (AT3G23510.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-16
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF+E FF  CE+ L E+GL+   FI  P+E   E+RLSS FIKEYIFPG CVP L+++T
Sbjct: 710 HEFMEMFFSRCEAALAEDGLMVLQFISTPEERYNEYRLSSDFIKEYIFPGACVPSLAKVT 769

Query: 136 TAMASASRL 139
           +AM+S+SRL
Sbjct: 770 SAMSSSSRL 778

[Close]
BLAST of CmoCh19G003400 vs. TAIR10
Match: AT3G23480.2 (AT3G23480.2 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-15
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           H+F+E FF  CE+ L E+G+    F  +P+E   E RL+SGFI EYIFPG C+P L+R+T
Sbjct: 279 HKFMETFFSHCEAALAEDGIFVLQFTAIPEELYDESRLTSGFITEYIFPGGCLPSLARVT 338

Query: 136 TAMASASRL 139
           +AMAS+SRL
Sbjct: 339 SAMASSSRL 347

[Close]
BLAST of CmoCh19G003400 vs. TAIR10
Match: AT3G23460.1 (AT3G23460.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 7.7e-07
Identity = 35/92 (38.04%), Postives = 47/92 (51.09%), Query Frame = 1 

Query: 6   VLSLIEKGTRLFITRFLV------------------VEKKKIKYNL-----------FLR 65
           V+SLIEK  R F TRFL                    E K  + +L           + +
Sbjct: 12  VMSLIEKAARFFFTRFLTHFISTGCVTIFEGGNMVTFEGKDSRCHLKSELEIHSPQFYWK 71

Query: 66  LREKLDLGLAGAYINGEFSLMDKEEGLLNLIL 69
           +  ++DLGLA AYING+FS ++KE GLLNLI+
Sbjct: 72  VMTQVDLGLADAYINGDFSFVNKETGLLNLIM 103

[Close]
BLAST of CmoCh19G003400 vs. NCBI nr
Match: gi|641835121|gb|KDO54102.1| (hypothetical protein CISIN_1g043102mg [Citrus sinensis])

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1 

Query: 69  RDDRSSWHEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECV 128
           R+DRS  HE++E+FFGCCES++ ++GL    FI +PDE   E RLSS F+KEYIFPG C+
Sbjct: 441 RNDRSFGHEYMEEFFGCCESLIAKDGLFVLQFISIPDERYNEFRLSSDFMKEYIFPGGCL 500

Query: 129 PLLSRITTAMASASRLW 140
           P LSRIT+AM++ASRLW
Sbjct: 501 PSLSRITSAMSAASRLW 517

[Close]
BLAST of CmoCh19G003400 vs. NCBI nr
Match: gi|778668690|ref|XP_011649138.1| (PREDICTED: uncharacterized protein LOC101213850 isoform X3 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF+EDFFG CESVL ENGL    FI +PDE   E+RLSS FIKEYIFPG C+P LSR+T
Sbjct: 418 HEFMEDFFGSCESVLAENGLFVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPCLSRLT 477

Query: 136 TAMASASRL 139
           TAMA+ASRL
Sbjct: 478 TAMANASRL 486

[Close]
BLAST of CmoCh19G003400 vs. NCBI nr
Match: gi|778668684|ref|XP_011649136.1| (PREDICTED: uncharacterized protein LOC101213850 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF+EDFFG CESVL ENGL    FI +PDE   E+RLSS FIKEYIFPG C+P LSR+T
Sbjct: 711 HEFMEDFFGSCESVLAENGLFVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPCLSRLT 770

Query: 136 TAMASASRL 139
           TAMA+ASRL
Sbjct: 771 TAMANASRL 779

[Close]
BLAST of CmoCh19G003400 vs. NCBI nr
Match: gi|659121471|ref|XP_008460676.1| (PREDICTED: pavine N-methyltransferase-like isoform X3 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF+EDFFG CESVL ENGL    FI +PDE   E+RLSS FIKEYIFPG C+P LSR+T
Sbjct: 403 HEFMEDFFGSCESVLAENGLFVLQFISIPDERYDEYRLSSDFIKEYIFPGGCLPCLSRLT 462

Query: 136 TAMASASRL 139
           TAMA+ASRL
Sbjct: 463 TAMANASRL 471

[Close]
BLAST of CmoCh19G003400 vs. NCBI nr
Match: gi|778668687|ref|XP_011649137.1| (PREDICTED: uncharacterized protein LOC101213850 isoform X2 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 76  HEFIEDFFGCCESVLEENGLL---FILVPDE---EHRLSSGFIKEYIFPGECVPLLSRIT 135
           HEF+EDFFG CESVL ENGL    FI +PDE   E+RLSS FIKEYIFPG C+P LSR+T
Sbjct: 468 HEFMEDFFGSCESVLAENGLFVLQFISIPDERYNEYRLSSDFIKEYIFPGGCLPCLSRLT 527

Query: 136 TAMASASRL 139
           TAMA+ASRL
Sbjct: 528 TAMANASRL 536

The following BLAST results are available for this feature:
BLAST of CmoCh19G003400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G003400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067ESB3_CITSI9.8e-1962.34Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043102mg PE=4 SV=1[more]
A0A0A0LIH1_CUCSA4.9e-1872.46Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171940 PE=4 SV=1[more]
A5BK89_VITVI1.4e-1769.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025151 PE=4 SV=1[more]
F6H8S0_VITVI1.4e-1769.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01620 PE=4 SV=... [more]
V4S6C3_9ROSI1.4e-1769.57Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004346mg PE=4 SV=1[more]
BLAST of CmoCh19G003400 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23530.11.3e-1762.32 Cyclopropane-fatty-acyl-phospholipid synthase[more]
AT3G23470.18.2e-1756.52 Cyclopropane-fatty-acyl-phospholipid synthase[more]
AT3G23510.12.4e-1659.42 Cyclopropane-fatty-acyl-phospholipid synthase[more]
AT3G23480.23.4e-1555.07 Cyclopropane-fatty-acyl-phospholipid synthase[more]
AT3G23460.17.7e-0738.04 S-adenosyl-L-methionine-dependent methyltransferases superfamily pro... [more]
BLAST of CmoCh19G003400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|641835121|gb|KDO54102.1|1.4e-1862.34hypothetical protein CISIN_1g043102mg [Citrus sinensis][more]
gi|778668690|ref|XP_011649138.1|7.0e-1872.46PREDICTED: uncharacterized protein LOC101213850 isoform X3 [Cucumis sativus][more]
gi|778668684|ref|XP_011649136.1|7.0e-1872.46PREDICTED: uncharacterized protein LOC101213850 isoform X1 [Cucumis sativus][more]
gi|659121471|ref|XP_008460676.1|7.0e-1872.46PREDICTED: pavine N-methyltransferase-like isoform X3 [Cucumis melo][more]
gi|778668687|ref|XP_011649137.1|7.0e-1872.46PREDICTED: uncharacterized protein LOC101213850 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008610 lipid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G003400.1CmoCh19G003400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G003400Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G003400Bottle gourd (USVL1VR-Ls)cmolsiB466
CmoCh19G003400Watermelon (97103) v2cmowmbB532
CmoCh19G003400Cucurbita moschata (Rifu)cmocmoB109
CmoCh19G003400Cucurbita maxima (Rimu)cmacmoB147
CmoCh19G003400Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G003400Cucurbita maxima (Rimu)cmacmoB510
CmoCh19G003400Cucurbita maxima (Rimu)cmacmoB511
CmoCh19G003400Watermelon (Charleston Gray)cmowcgB444
CmoCh19G003400Watermelon (Charleston Gray)cmowcgB452