CmoCh18G013490.1 (mRNA) Cucurbita moschata (Rifu)

NameCmoCh18G013490.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr18 : 12751855 .. 12752373 (+)
Sequence length330
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAAAAATGGAGGCTTTTTGCACCATTCCTCGCTTTCCCCTCATCTGGGTTATCTCGTCTTTGCATCTCCTTTCTCTCATCTGGGTTATCTCTTCTTTGCATCTTCTTTCTCTCATCTGGGTTATCTCTTCTTTGCACGTTTAAGCATTAAACTGAGCGGTATTGTAAAACAGTAGCCGCCATTTGTGCTGCAAAACTGTGTAATGTGGAAGTTAACAGGTGGGATAACGAGGAAGGAAAGAGGCTGGAATTTCTATTGTTAATGTAAATGGTAATGAATGGTCAATGATTGTTGATGATTTAATGTGGTTTATAAATGGAAAGAGACCCATTCTTTTGTTTTGTCTGTGGATAACTTGTCGCCTATTTTAGAATGCAAAAGTTGTCAGCCTCAGAATGGATTCCGCCATTGTCTAATATTGCAAGCTTAGTGAACGGTGCTCCGTTCACCGTCTTCCCCCATCCTAATCTCCGATATTTTCACTACTATTTCGTCGATGGCTTCTGTAGATAA

mRNA sequence

ATGTTGCAAAAATGGAGGCTTTTTGCACCATTCCTCGCTTTCCCCTCATCTGGGTTATCTCGTCTTTGCATCTCCTTTCTCTCATCTGGGTTATCTCTTCTTTGCATCTTCTTTCTCTCATCTGGGTTATCTCTTCTTTGCACGTGGGATAACGAGGAAGGAAAGAGGCTGGAATTTCTATTGTTAATAATGCAAAAGTTGTCAGCCTCAGAATGGATTCCGCCATTGTCTAATATTGCAAGCTTAGTGAACGGTGCTCCGTTCACCGTCTTCCCCCATCCTAATCTCCGATATTTTCACTACTATTTCGTCGATGGCTTCTGTAGATAA

Coding sequence (CDS)

ATGTTGCAAAAATGGAGGCTTTTTGCACCATTCCTCGCTTTCCCCTCATCTGGGTTATCTCGTCTTTGCATCTCCTTTCTCTCATCTGGGTTATCTCTTCTTTGCATCTTCTTTCTCTCATCTGGGTTATCTCTTCTTTGCACGTGGGATAACGAGGAAGGAAAGAGGCTGGAATTTCTATTGTTAATAATGCAAAAGTTGTCAGCCTCAGAATGGATTCCGCCATTGTCTAATATTGCAAGCTTAGTGAACGGTGCTCCGTTCACCGTCTTCCCCCATCCTAATCTCCGATATTTTCACTACTATTTCGTCGATGGCTTCTGTAGATAA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000488Death domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh18G013490CmoCh18G013490gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh18G013490.1CmoCh18G013490.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh18G013490.1.exon.1CmoCh18G013490.1.exon.1exon
CmoCh18G013490.1.exon.2CmoCh18G013490.1.exon.2exon
CmoCh18G013490.1.exon.3CmoCh18G013490.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh18G013490.1.CDS.1CmoCh18G013490.1.CDS.1CDS
CmoCh18G013490.1.CDS.2CmoCh18G013490.1.CDS.2CDS
CmoCh18G013490.1.CDS.3CmoCh18G013490.1.CDS.3CDS


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000488Death domainPROFILEPS50017DEATH_DOMAINcoord: 1..80
score: 8