CmoCh18G013030.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G013030.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein PAM68, chloroplastic
Location	Cmo_Chr18 : 12496259 .. 12496828 (-)
Sequence length	570

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA

mRNA sequence

ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA

Coding sequence (CDS)

ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA

Homology

[Close]

BLAST of CmoCh18G013030.1 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26
Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSR----GQIQLNAKGFTGS 60
           M+AL+CS R         P    SR    T + N +     ++     ++    KGF  S
Sbjct: 1   MRALLCSHRLL-------PLSSLSRTTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSS 60

Query: 61  PATAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKIL 120
             +        +KP   +   +   DD  IP+ V +R++ RI+  VG P+  GV ++K+L
Sbjct: 61  RTS--------EKPGRPDPDPE---DDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVL 120

Query: 121 EAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVE 180
           E + ++ +W VP+W+P+LT  +TFG+S +GIAYG+LST+LDP K  +LFG  EA++NWVE
Sbjct: 121 EVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVE 167

Query: 181 MWKEE 182
           MWKE+
Sbjct: 181 MWKED 167

[Close]

BLAST of CmoCh18G013030.1 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-17
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 1


Query: 21  KQRSRIDDSTTTKNLRIFTRTSRGQIQLNA-KGFTGSPATAKDRETAVKKPSGQNNSRDG 80
           K +S++  S T  N    +R +     +N+ KGF   P   K +++   KP  Q++  D 
Sbjct: 37  KTKSQVPKSITCINRLEISRIAPLHATMNSPKGF--GPPPKKTKKSKKPKPGNQSDEDDD 96

Query: 81  GGDDDE-----------IPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHVP 140
             D+D+           IPE V  R+I+R+   VG+P+  G+        +       VP
Sbjct: 97  DEDEDDDDEEDERERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVP 156

Query: 141 IWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            W+PF+  F+ FG +  G++YG +S+S DP +EG+L GW+EA+KNW   W+
Sbjct: 157 TWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQ 205

[Close]

BLAST of CmoCh18G013030.1 vs. TrEMBL
Match: A0A0A0LLM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G213970 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 133/188 (70.74%), Postives = 150/188 (79.79%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRI-DDSTTTKNLRIFTRT-SRGQIQLNAKGFTGSPA 60
           MK+L CSF  AL LS PPPW QR+ I + ST T NL  FT T SRGQ+Q+NAKGFT SP 
Sbjct: 1   MKSLACSFPQALLLSNPPPWNQRTLIINHSTITNNLTNFTPTLSRGQVQVNAKGFTNSPR 60

Query: 61  TAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEA 120
           TAK+RET     + QNN+ D   DDDEIPEAV  RIITRILAFVG+PMAFGVTL+KI +A
Sbjct: 61  TAKNRET-----TAQNNNED---DDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQA 120

Query: 121 VHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMW 180
           + EQ LW VPIW+PF T FLTFGASTMGIAYGTLSTSLDPEK+G++ GW+EAQKNWVEMW
Sbjct: 121 IKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGWEEAQKNWVEMW 180

Query: 181 KEEDEANR 187
           KEEDE  R
Sbjct: 181 KEEDEGRR 180

[Close]

BLAST of CmoCh18G013030.1 vs. TrEMBL
Match: M5X516_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026735mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 92/190 (48.42%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 1   MKALVCSFRHALHL-SKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
           MK LV S + +L+L SK  PW  +S   + TT +N +   RT +  +  NAKGF  +PA+
Sbjct: 1   MKTLVFSSQPSLYLASKCSPWNPKSLTFNPTTLQNQKHNKRTYK--MHANAKGFGSAPAS 60

Query: 61  AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
            K+      KP+ QN++++    D+EIP+AV +R++ RI+A VG+PMA G   + + E +
Sbjct: 61  TKE------KPTSQNSNKNDQDGDEEIPQAVFERMLVRIVASVGLPMAMGFAFLNVFEVI 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            E+ LW VP+WLPFLT  LTFG+ST+GIAYG LSTS D EK+G++ G++EAQ NWVEMW 
Sbjct: 121 KEKHLWDVPLWLPFLTTLLTFGSSTLGIAYGALSTSWDAEKKGSILGFEEAQSNWVEMWS 180

Query: 181 EEDEANRGGN 190
           EEDE+N   N
Sbjct: 181 EEDESNSKKN 182

[Close]

BLAST of CmoCh18G013030.1 vs. TrEMBL
Match: E0CUU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01260 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.1e-39
Identity = 91/182 (50.00%), Postives = 119/182 (65.38%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
           MK LVC  +   H++KP PW  R+    +T   NLR  T     ++   AKGF  +P T 
Sbjct: 1   MKILVCLQQPNPHITKPSPWNPRAPTPIATKDLNLRPRT----WKLHAEAKGFGVAPGTI 60

Query: 61  KDRETAVKKPSGQNNSRDGGGDDDE-IPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
            +++TA K+   + NS +G  DDDE IP+ V  R+I RIL FVG PM  GV L+ +  AV
Sbjct: 61  LEKKTAQKETVPRKNSGNGDDDDDEKIPQVVFDRMIVRILFFVGAPMGIGVALLNLFGAV 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            +Q LW VP+WLPFLT  + FGAS +GIAYGTLSTS D EK+G+L G +EAQ+NWV++WK
Sbjct: 121 KDQHLWDVPVWLPFLTTLIAFGASALGIAYGTLSTSWDAEKKGSLLGLEEAQQNWVDVWK 178

Query: 181 EE 182
           EE
Sbjct: 181 EE 178

[Close]

BLAST of CmoCh18G013030.1 vs. TrEMBL
Match: A0A068UA19_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020082001 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 91/176 (51.70%), Postives = 116/176 (65.91%), Query Frame = 1


Query: 12  LHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA---KDRETAVK 71
           LH  +   W QR+ I  S T  +     ++ R  +   AKGF  +PA     KDRE A  
Sbjct: 13  LHCPRTASWNQRNPILHSKTLNHATFQLKSWR--LHAEAKGFNRAPANMLQQKDRENAAA 72

Query: 72  KP-SGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHV 131
           K   G+N   D   DDD+IPEAV +RI+ RIL +VGVP+  GV L+++   + EQ LW V
Sbjct: 73  KSYRGKNGEDDDDDDDDKIPEAVWERIMFRILFYVGVPLVTGVALLQVFSIMKEQNLWDV 132

Query: 132 PIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKEEDE 184
           PIWLPFLT FLTFGAS +GIAYGTLSTS D ++EG+  G++EAQKNWVE+WKEE+E
Sbjct: 133 PIWLPFLTTFLTFGASALGIAYGTLSTSWDAQREGSFLGFEEAQKNWVEIWKEEEE 186

[Close]

BLAST of CmoCh18G013030.1 vs. TrEMBL
Match: A0A061G1S0_THECC (Sterol regulatory element-binding protein cleavage-activating protein, putative OS=Theobroma cacao GN=TCM_015261 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.1e-36
Identity = 82/183 (44.81%), Postives = 114/183 (62.30%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
           MK L+       +L KP  W  R+     T  K+      +S  ++Q NAKGF  +P  +
Sbjct: 1   MKTLLSLEAQQFYLPKPSLWGPRTPTILPTIIKSQNQIQSSSTWKLQANAKGFASTPPAS 60

Query: 61  KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH 120
                  KK + ++++ +   DD+ +P+ V  RII RIL  VGVP+A G+ L+ +     
Sbjct: 61  -----VKKKGANEDSNNNNNNDDEPVPQVVFDRIIARILVSVGVPLATGLALLHLFGVAK 120

Query: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
           EQ LW VP+WLPFLT F+TFGAST+GIAYGTLS S DPE+ G++ G +EAQ+NWVEMWKE
Sbjct: 121 EQNLWDVPLWLPFLTTFITFGASTLGIAYGTLSASWDPERRGSIMGLEEAQRNWVEMWKE 178

Query: 181 EDE 184
           E++
Sbjct: 181 END 178

[Close]

BLAST of CmoCh18G013030.1 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464))

HSP 1 Score: 120.9 bits (302), Expect = 8.2e-28
Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSR----GQIQLNAKGFTGS 60
           M+AL+CS R         P    SR    T + N +     ++     ++    KGF  S
Sbjct: 1   MRALLCSHRLL-------PLSSLSRTTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSS 60

Query: 61  PATAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKIL 120
             +        +KP   +   +   DD  IP+ V +R++ RI+  VG P+  GV ++K+L
Sbjct: 61  RTS--------EKPGRPDPDPE---DDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVL 120

Query: 121 EAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVE 180
           E + ++ +W VP+W+P+LT  +TFG+S +GIAYG+LST+LDP K  +LFG  EA++NWVE
Sbjct: 121 EVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVE 167

Query: 181 MWKEE 182
           MWKE+
Sbjct: 181 MWKED 167

[Close]

BLAST of CmoCh18G013030.1 vs. TAIR10
Match: AT4G19100.1 (AT4G19100.1 Protein of unknown function (DUF3464))

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 1


Query: 21  KQRSRIDDSTTTKNLRIFTRTSRGQIQLNA-KGFTGSPATAKDRETAVKKPSGQNNSRDG 80
           K +S++  S T  N    +R +     +N+ KGF   P   K +++   KP  Q++  D 
Sbjct: 37  KTKSQVPKSITCINRLEISRIAPLHATMNSPKGF--GPPPKKTKKSKKPKPGNQSDEDDD 96

Query: 81  GGDDDE-----------IPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHVP 140
             D+D+           IPE V  R+I+R+   VG+P+  G+        +       VP
Sbjct: 97  DEDEDDDDEEDERERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVP 156

Query: 141 IWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            W+PF+  F+ FG +  G++YG +S+S DP +EG+L GW+EA+KNW   W+
Sbjct: 157 TWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQ 205

[Close]

BLAST of CmoCh18G013030.1 vs. NCBI nr
Match: gi|659077646|ref|XP_008439311.1| (PREDICTED: uncharacterized protein PAM68-like [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 1.7e-70
Identity = 140/187 (74.87%), Postives = 157/187 (83.96%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRI-DDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
           MK+  CSFR AL L KPPP  QR+ I +DST TKNL  FT TSRGQ+Q+NAKGFTGSPAT
Sbjct: 1   MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60

Query: 61  AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
           AK+RETA K  SGQNN+ D   DDDEIPEAV  RIITRILAFVG+PMAFGVTL+KI +A+
Sbjct: 61  AKNRETAAKNLSGQNNNED---DDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAI 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            EQ LW VPIW+PF T FLTFGASTMGIAYGTLSTSLDPEK+G++ GW+EAQKNWVEMWK
Sbjct: 121 KEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGWEEAQKNWVEMWK 180

Query: 181 EEDEANR 187
           EEDE +R
Sbjct: 181 EEDEVSR 184

[Close]

BLAST of CmoCh18G013030.1 vs. NCBI nr
Match: gi|449465705|ref|XP_004150568.1| (PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 2.3e-64
Identity = 133/188 (70.74%), Postives = 150/188 (79.79%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRI-DDSTTTKNLRIFTRT-SRGQIQLNAKGFTGSPA 60
           MK+L CSF  AL LS PPPW QR+ I + ST T NL  FT T SRGQ+Q+NAKGFT SP 
Sbjct: 1   MKSLACSFPQALLLSNPPPWNQRTLIINHSTITNNLTNFTPTLSRGQVQVNAKGFTNSPR 60

Query: 61  TAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEA 120
           TAK+RET     + QNN+ D   DDDEIPEAV  RIITRILAFVG+PMAFGVTL+KI +A
Sbjct: 61  TAKNRET-----TAQNNNED---DDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQA 120

Query: 121 VHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMW 180
           + EQ LW VPIW+PF T FLTFGASTMGIAYGTLSTSLDPEK+G++ GW+EAQKNWVEMW
Sbjct: 121 IKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGWEEAQKNWVEMW 180

Query: 181 KEEDEANR 187
           KEEDE  R
Sbjct: 181 KEEDEGRR 180

[Close]

BLAST of CmoCh18G013030.1 vs. NCBI nr
Match: gi|596038045|ref|XP_007219815.1| (hypothetical protein PRUPE_ppa026735mg [Prunus persica])

HSP 1 Score: 172.9 bits (437), Expect = 5.2e-40
Identity = 92/190 (48.42%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 1   MKALVCSFRHALHL-SKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
           MK LV S + +L+L SK  PW  +S   + TT +N +   RT +  +  NAKGF  +PA+
Sbjct: 1   MKTLVFSSQPSLYLASKCSPWNPKSLTFNPTTLQNQKHNKRTYK--MHANAKGFGSAPAS 60

Query: 61  AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
            K+      KP+ QN++++    D+EIP+AV +R++ RI+A VG+PMA G   + + E +
Sbjct: 61  TKE------KPTSQNSNKNDQDGDEEIPQAVFERMLVRIVASVGLPMAMGFAFLNVFEVI 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            E+ LW VP+WLPFLT  LTFG+ST+GIAYG LSTS D EK+G++ G++EAQ NWVEMW 
Sbjct: 121 KEKHLWDVPLWLPFLTTLLTFGSSTLGIAYGALSTSWDAEKKGSILGFEEAQSNWVEMWS 180

Query: 181 EEDEANRGGN 190
           EEDE+N   N
Sbjct: 181 EEDESNSKKN 182

[Close]

BLAST of CmoCh18G013030.1 vs. NCBI nr
Match: gi|645258318|ref|XP_008234831.1| (PREDICTED: uncharacterized protein PAM68-like [Prunus mume])

HSP 1 Score: 170.6 bits (431), Expect = 2.6e-39
Identity = 91/190 (47.89%), Postives = 128/190 (67.37%), Query Frame = 1


Query: 1   MKALVCSFRHALHL-SKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
           MK LV S + +L+L SK  PW  +S   + TT +  +   RT +  +  NAKGF  +PA+
Sbjct: 1   MKTLVFSSQPSLYLASKCSPWNPKSLTFNPTTLQKQKHNKRTYK--MHANAKGFGSAPAS 60

Query: 61  AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
           AK+      KP+ QN++++    D+EIP+AV +R++ RI+A VG+PMA G   + + E +
Sbjct: 61  AKE------KPTSQNSNKNDQDGDEEIPQAVFERMLVRIVASVGLPMAMGFAFLNVFEVI 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            E+ LW VP+WLPFLT  LTFG+ST+GIAYG LSTS D EK+G++ G++E Q NWVEMW 
Sbjct: 121 KEKHLWDVPLWLPFLTTLLTFGSSTLGIAYGALSTSWDAEKKGSILGFEEVQSNWVEMWS 180

Query: 181 EEDEANRGGN 190
           EEDE+N   N
Sbjct: 181 EEDESNSKKN 182

[Close]

BLAST of CmoCh18G013030.1 vs. NCBI nr
Match: gi|694405430|ref|XP_009377566.1| (PREDICTED: uncharacterized protein PAM68-like [Pyrus x bretschneideri])

HSP 1 Score: 170.6 bits (431), Expect = 2.6e-39
Identity = 90/185 (48.65%), Postives = 125/185 (67.57%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
           MK L+ S + +L+L    PWK ++     TT +NL    R++  +   NAKGF GS   A
Sbjct: 1   MKTLIFSSQPSLYLPSSLPWKPKTLTFHPTTLQNLGHLKRSTY-KTHANAKGF-GSAPPA 60

Query: 61  KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH 120
             +ET   K SG+N++ D    D+E+P+ V +R++ RI+A VG+P+A G   +K+ +AV 
Sbjct: 61  TTKETPTSKNSGKNDNNDS---DEEVPQVVFERMLVRIIAAVGLPLATGFAFLKVFDAVK 120

Query: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
           E+ LW VP+WLPFLT  LTFGAS +GIAYG LSTS D EK+G++ G +EAQ NWVEMW+E
Sbjct: 121 EKHLWDVPLWLPFLTTLLTFGASALGIAYGALSTSWDAEKKGSVLGLEEAQSNWVEMWRE 180

Query: 181 EDEAN 186
           EDE+N
Sbjct: 181 EDESN 180

The following BLAST results are available for this feature:

BLAST of CmoCh18G013030.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5278_ARATH	1.5e-26	37.30	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=...	[more]
PAM68_ARATH	3.6e-17	32.16	Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1	[more]

BLAST of CmoCh18G013030.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLM4_CUCSA	1.6e-64	70.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G213970 PE=4 SV=1	[more]
M5X516_PRUPE	3.6e-40	48.42	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026735mg PE=4 SV=1	[more]
E0CUU2_VITVI	3.1e-39	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01260 PE=4 SV=...	[more]
A0A068UA19_COFCA	3.4e-38	51.70	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020082001 PE=4 SV=1	[more]
A0A061G1S0_THECC	4.1e-36	44.81	Sterol regulatory element-binding protein cleavage-activating protein, putative ...	[more]

BLAST of CmoCh18G013030.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52780.1	8.2e-28	37.30	Protein of unknown function (DUF3464)	[more]
AT4G19100.1	2.0e-18	32.16	Protein of unknown function (DUF3464)	[more]

BLAST of CmoCh18G013030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077646\|ref\|XP_008439311.1\|	1.7e-70	74.87	PREDICTED: uncharacterized protein PAM68-like [Cucumis melo]	[more]
gi\|449465705\|ref\|XP_004150568.1\|	2.3e-64	70.74	PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus]	[more]
gi\|596038045\|ref\|XP_007219815.1\|	5.2e-40	48.42	hypothetical protein PRUPE_ppa026735mg [Prunus persica]	[more]
gi\|645258318\|ref\|XP_008234831.1\|	2.6e-39	47.89	PREDICTED: uncharacterized protein PAM68-like [Prunus mume]	[more]
gi\|694405430\|ref\|XP_009377566.1\|	2.6e-39	48.65	PREDICTED: uncharacterized protein PAM68-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021855	PAM68-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh18G013030	CmoCh18G013030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013030.1	CmoCh18G013030.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013030.1.CDS.1	CmoCh18G013030.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G013030.1.exon.1	CmoCh18G013030.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	Protein of unknown function DUF3464	PFAM	PF11947	DUF3464	coord: 59..180 score: 1.2
None	No IPR available	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 71..183 score: 1.1
None	No IPR available	PANTHER	PTHR34575:SF1	SUBFAMILY NOT NAMED	coord: 71..183 score: 1.1