CmoCh18G013030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G013030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein PAM68, chloroplastic
Location	Cmo_Chr18 : 12496259 .. 12496828 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA

mRNA sequence

ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA

Coding sequence (CDS)

ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA

Homology

[Close]

BLAST of CmoCh18G013030 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26
Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSR----GQIQLNAKGFTGS 60
           M+AL+CS R         P    SR    T + N +     ++     ++    KGF  S
Sbjct: 1   MRALLCSHRLL-------PLSSLSRTTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSS 60

Query: 61  PATAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKIL 120
             +        +KP   +   +   DD  IP+ V +R++ RI+  VG P+  GV ++K+L
Sbjct: 61  RTS--------EKPGRPDPDPE---DDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVL 120

Query: 121 EAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVE 180
           E + ++ +W VP+W+P+LT  +TFG+S +GIAYG+LST+LDP K  +LFG  EA++NWVE
Sbjct: 121 EVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVE 167

Query: 181 MWKEE 182
           MWKE+
Sbjct: 181 MWKED 167

[Close]

BLAST of CmoCh18G013030 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-17
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 1


Query: 21  KQRSRIDDSTTTKNLRIFTRTSRGQIQLNA-KGFTGSPATAKDRETAVKKPSGQNNSRDG 80
           K +S++  S T  N    +R +     +N+ KGF   P   K +++   KP  Q++  D 
Sbjct: 37  KTKSQVPKSITCINRLEISRIAPLHATMNSPKGF--GPPPKKTKKSKKPKPGNQSDEDDD 96

Query: 81  GGDDDE-----------IPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHVP 140
             D+D+           IPE V  R+I+R+   VG+P+  G+        +       VP
Sbjct: 97  DEDEDDDDEEDERERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVP 156

Query: 141 IWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            W+PF+  F+ FG +  G++YG +S+S DP +EG+L GW+EA+KNW   W+
Sbjct: 157 TWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQ 205

[Close]

BLAST of CmoCh18G013030 vs. TrEMBL
Match: A0A0A0LLM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G213970 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 133/188 (70.74%), Postives = 150/188 (79.79%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRI-DDSTTTKNLRIFTRT-SRGQIQLNAKGFTGSPA 60
           MK+L CSF  AL LS PPPW QR+ I + ST T NL  FT T SRGQ+Q+NAKGFT SP 
Sbjct: 1   MKSLACSFPQALLLSNPPPWNQRTLIINHSTITNNLTNFTPTLSRGQVQVNAKGFTNSPR 60

Query: 61  TAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEA 120
           TAK+RET     + QNN+ D   DDDEIPEAV  RIITRILAFVG+PMAFGVTL+KI +A
Sbjct: 61  TAKNRET-----TAQNNNED---DDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQA 120

Query: 121 VHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMW 180
           + EQ LW VPIW+PF T FLTFGASTMGIAYGTLSTSLDPEK+G++ GW+EAQKNWVEMW
Sbjct: 121 IKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGWEEAQKNWVEMW 180

Query: 181 KEEDEANR 187
           KEEDE  R
Sbjct: 181 KEEDEGRR 180

[Close]

BLAST of CmoCh18G013030 vs. TrEMBL
Match: M5X516_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026735mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 92/190 (48.42%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 1   MKALVCSFRHALHL-SKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
           MK LV S + +L+L SK  PW  +S   + TT +N +   RT +  +  NAKGF  +PA+
Sbjct: 1   MKTLVFSSQPSLYLASKCSPWNPKSLTFNPTTLQNQKHNKRTYK--MHANAKGFGSAPAS 60

Query: 61  AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
            K+      KP+ QN++++    D+EIP+AV +R++ RI+A VG+PMA G   + + E +
Sbjct: 61  TKE------KPTSQNSNKNDQDGDEEIPQAVFERMLVRIVASVGLPMAMGFAFLNVFEVI 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            E+ LW VP+WLPFLT  LTFG+ST+GIAYG LSTS D EK+G++ G++EAQ NWVEMW 
Sbjct: 121 KEKHLWDVPLWLPFLTTLLTFGSSTLGIAYGALSTSWDAEKKGSILGFEEAQSNWVEMWS 180

Query: 181 EEDEANRGGN 190
           EEDE+N   N
Sbjct: 181 EEDESNSKKN 182

[Close]

BLAST of CmoCh18G013030 vs. TrEMBL
Match: E0CUU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01260 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.1e-39
Identity = 91/182 (50.00%), Postives = 119/182 (65.38%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
           MK LVC  +   H++KP PW  R+    +T   NLR  T     ++   AKGF  +P T 
Sbjct: 1   MKILVCLQQPNPHITKPSPWNPRAPTPIATKDLNLRPRT----WKLHAEAKGFGVAPGTI 60

Query: 61  KDRETAVKKPSGQNNSRDGGGDDDE-IPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
            +++TA K+   + NS +G  DDDE IP+ V  R+I RIL FVG PM  GV L+ +  AV
Sbjct: 61  LEKKTAQKETVPRKNSGNGDDDDDEKIPQVVFDRMIVRILFFVGAPMGIGVALLNLFGAV 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            +Q LW VP+WLPFLT  + FGAS +GIAYGTLSTS D EK+G+L G +EAQ+NWV++WK
Sbjct: 121 KDQHLWDVPVWLPFLTTLIAFGASALGIAYGTLSTSWDAEKKGSLLGLEEAQQNWVDVWK 178

Query: 181 EE 182
           EE
Sbjct: 181 EE 178

[Close]

BLAST of CmoCh18G013030 vs. TrEMBL
Match: A0A068UA19_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020082001 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 91/176 (51.70%), Postives = 116/176 (65.91%), Query Frame = 1


Query: 12  LHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA---KDRETAVK 71
           LH  +   W QR+ I  S T  +     ++ R  +   AKGF  +PA     KDRE A  
Sbjct: 13  LHCPRTASWNQRNPILHSKTLNHATFQLKSWR--LHAEAKGFNRAPANMLQQKDRENAAA 72

Query: 72  KP-SGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHV 131
           K   G+N   D   DDD+IPEAV +RI+ RIL +VGVP+  GV L+++   + EQ LW V
Sbjct: 73  KSYRGKNGEDDDDDDDDKIPEAVWERIMFRILFYVGVPLVTGVALLQVFSIMKEQNLWDV 132

Query: 132 PIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKEEDE 184
           PIWLPFLT FLTFGAS +GIAYGTLSTS D ++EG+  G++EAQKNWVE+WKEE+E
Sbjct: 133 PIWLPFLTTFLTFGASALGIAYGTLSTSWDAQREGSFLGFEEAQKNWVEIWKEEEE 186

[Close]

BLAST of CmoCh18G013030 vs. TrEMBL
Match: A0A061G1S0_THECC (Sterol regulatory element-binding protein cleavage-activating protein, putative OS=Theobroma cacao GN=TCM_015261 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.1e-36
Identity = 82/183 (44.81%), Postives = 114/183 (62.30%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
           MK L+       +L KP  W  R+     T  K+      +S  ++Q NAKGF  +P  +
Sbjct: 1   MKTLLSLEAQQFYLPKPSLWGPRTPTILPTIIKSQNQIQSSSTWKLQANAKGFASTPPAS 60

Query: 61  KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH 120
                  KK + ++++ +   DD+ +P+ V  RII RIL  VGVP+A G+ L+ +     
Sbjct: 61  -----VKKKGANEDSNNNNNNDDEPVPQVVFDRIIARILVSVGVPLATGLALLHLFGVAK 120

Query: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
           EQ LW VP+WLPFLT F+TFGAST+GIAYGTLS S DPE+ G++ G +EAQ+NWVEMWKE
Sbjct: 121 EQNLWDVPLWLPFLTTFITFGASTLGIAYGTLSASWDPERRGSIMGLEEAQRNWVEMWKE 178

Query: 181 EDE 184
           E++
Sbjct: 181 END 178

[Close]

BLAST of CmoCh18G013030 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464))

HSP 1 Score: 120.9 bits (302), Expect = 8.2e-28
Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSR----GQIQLNAKGFTGS 60
           M+AL+CS R         P    SR    T + N +     ++     ++    KGF  S
Sbjct: 1   MRALLCSHRLL-------PLSSLSRTTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSS 60

Query: 61  PATAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKIL 120
             +        +KP   +   +   DD  IP+ V +R++ RI+  VG P+  GV ++K+L
Sbjct: 61  RTS--------EKPGRPDPDPE---DDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVL 120

Query: 121 EAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVE 180
           E + ++ +W VP+W+P+LT  +TFG+S +GIAYG+LST+LDP K  +LFG  EA++NWVE
Sbjct: 121 EVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVE 167

Query: 181 MWKEE 182
           MWKE+
Sbjct: 181 MWKED 167

[Close]

BLAST of CmoCh18G013030 vs. TAIR10
Match: AT4G19100.1 (AT4G19100.1 Protein of unknown function (DUF3464))

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 1


Query: 21  KQRSRIDDSTTTKNLRIFTRTSRGQIQLNA-KGFTGSPATAKDRETAVKKPSGQNNSRDG 80
           K +S++  S T  N    +R +     +N+ KGF   P   K +++   KP  Q++  D 
Sbjct: 37  KTKSQVPKSITCINRLEISRIAPLHATMNSPKGF--GPPPKKTKKSKKPKPGNQSDEDDD 96

Query: 81  GGDDDE-----------IPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHVP 140
             D+D+           IPE V  R+I+R+   VG+P+  G+        +       VP
Sbjct: 97  DEDEDDDDEEDERERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVP 156

Query: 141 IWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            W+PF+  F+ FG +  G++YG +S+S DP +EG+L GW+EA+KNW   W+
Sbjct: 157 TWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQ 205

[Close]

BLAST of CmoCh18G013030 vs. NCBI nr
Match: gi|659077646|ref|XP_008439311.1| (PREDICTED: uncharacterized protein PAM68-like [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 1.7e-70
Identity = 140/187 (74.87%), Postives = 157/187 (83.96%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRI-DDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
           MK+  CSFR AL L KPPP  QR+ I +DST TKNL  FT TSRGQ+Q+NAKGFTGSPAT
Sbjct: 1   MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60

Query: 61  AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
           AK+RETA K  SGQNN+ D   DDDEIPEAV  RIITRILAFVG+PMAFGVTL+KI +A+
Sbjct: 61  AKNRETAAKNLSGQNNNED---DDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAI 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            EQ LW VPIW+PF T FLTFGASTMGIAYGTLSTSLDPEK+G++ GW+EAQKNWVEMWK
Sbjct: 121 KEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGWEEAQKNWVEMWK 180

Query: 181 EEDEANR 187
           EEDE +R
Sbjct: 181 EEDEVSR 184

[Close]

BLAST of CmoCh18G013030 vs. NCBI nr
Match: gi|449465705|ref|XP_004150568.1| (PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 2.3e-64
Identity = 133/188 (70.74%), Postives = 150/188 (79.79%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRI-DDSTTTKNLRIFTRT-SRGQIQLNAKGFTGSPA 60
           MK+L CSF  AL LS PPPW QR+ I + ST T NL  FT T SRGQ+Q+NAKGFT SP 
Sbjct: 1   MKSLACSFPQALLLSNPPPWNQRTLIINHSTITNNLTNFTPTLSRGQVQVNAKGFTNSPR 60

Query: 61  TAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEA 120
           TAK+RET     + QNN+ D   DDDEIPEAV  RIITRILAFVG+PMAFGVTL+KI +A
Sbjct: 61  TAKNRET-----TAQNNNED---DDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQA 120

Query: 121 VHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMW 180
           + EQ LW VPIW+PF T FLTFGASTMGIAYGTLSTSLDPEK+G++ GW+EAQKNWVEMW
Sbjct: 121 IKEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGWEEAQKNWVEMW 180

Query: 181 KEEDEANR 187
           KEEDE  R
Sbjct: 181 KEEDEGRR 180

[Close]

BLAST of CmoCh18G013030 vs. NCBI nr
Match: gi|596038045|ref|XP_007219815.1| (hypothetical protein PRUPE_ppa026735mg [Prunus persica])

HSP 1 Score: 172.9 bits (437), Expect = 5.2e-40
Identity = 92/190 (48.42%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 1   MKALVCSFRHALHL-SKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
           MK LV S + +L+L SK  PW  +S   + TT +N +   RT +  +  NAKGF  +PA+
Sbjct: 1   MKTLVFSSQPSLYLASKCSPWNPKSLTFNPTTLQNQKHNKRTYK--MHANAKGFGSAPAS 60

Query: 61  AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
            K+      KP+ QN++++    D+EIP+AV +R++ RI+A VG+PMA G   + + E +
Sbjct: 61  TKE------KPTSQNSNKNDQDGDEEIPQAVFERMLVRIVASVGLPMAMGFAFLNVFEVI 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            E+ LW VP+WLPFLT  LTFG+ST+GIAYG LSTS D EK+G++ G++EAQ NWVEMW 
Sbjct: 121 KEKHLWDVPLWLPFLTTLLTFGSSTLGIAYGALSTSWDAEKKGSILGFEEAQSNWVEMWS 180

Query: 181 EEDEANRGGN 190
           EEDE+N   N
Sbjct: 181 EEDESNSKKN 182

[Close]

BLAST of CmoCh18G013030 vs. NCBI nr
Match: gi|645258318|ref|XP_008234831.1| (PREDICTED: uncharacterized protein PAM68-like [Prunus mume])

HSP 1 Score: 170.6 bits (431), Expect = 2.6e-39
Identity = 91/190 (47.89%), Postives = 128/190 (67.37%), Query Frame = 1


Query: 1   MKALVCSFRHALHL-SKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
           MK LV S + +L+L SK  PW  +S   + TT +  +   RT +  +  NAKGF  +PA+
Sbjct: 1   MKTLVFSSQPSLYLASKCSPWNPKSLTFNPTTLQKQKHNKRTYK--MHANAKGFGSAPAS 60

Query: 61  AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
           AK+      KP+ QN++++    D+EIP+AV +R++ RI+A VG+PMA G   + + E +
Sbjct: 61  AKE------KPTSQNSNKNDQDGDEEIPQAVFERMLVRIVASVGLPMAMGFAFLNVFEVI 120

Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
            E+ LW VP+WLPFLT  LTFG+ST+GIAYG LSTS D EK+G++ G++E Q NWVEMW 
Sbjct: 121 KEKHLWDVPLWLPFLTTLLTFGSSTLGIAYGALSTSWDAEKKGSILGFEEVQSNWVEMWS 180

Query: 181 EEDEANRGGN 190
           EEDE+N   N
Sbjct: 181 EEDESNSKKN 182

[Close]

BLAST of CmoCh18G013030 vs. NCBI nr
Match: gi|694405430|ref|XP_009377566.1| (PREDICTED: uncharacterized protein PAM68-like [Pyrus x bretschneideri])

HSP 1 Score: 170.6 bits (431), Expect = 2.6e-39
Identity = 90/185 (48.65%), Postives = 125/185 (67.57%), Query Frame = 1


Query: 1   MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
           MK L+ S + +L+L    PWK ++     TT +NL    R++  +   NAKGF GS   A
Sbjct: 1   MKTLIFSSQPSLYLPSSLPWKPKTLTFHPTTLQNLGHLKRSTY-KTHANAKGF-GSAPPA 60

Query: 61  KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH 120
             +ET   K SG+N++ D    D+E+P+ V +R++ RI+A VG+P+A G   +K+ +AV 
Sbjct: 61  TTKETPTSKNSGKNDNNDS---DEEVPQVVFERMLVRIIAAVGLPLATGFAFLKVFDAVK 120

Query: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
           E+ LW VP+WLPFLT  LTFGAS +GIAYG LSTS D EK+G++ G +EAQ NWVEMW+E
Sbjct: 121 EKHLWDVPLWLPFLTTLLTFGASALGIAYGALSTSWDAEKKGSVLGLEEAQSNWVEMWRE 180

Query: 181 EDEAN 186
           EDE+N
Sbjct: 181 EDESN 180

The following BLAST results are available for this feature:

BLAST of CmoCh18G013030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5278_ARATH	1.5e-26	37.30	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=...	[more]
PAM68_ARATH	3.6e-17	32.16	Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1	[more]

BLAST of CmoCh18G013030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLM4_CUCSA	1.6e-64	70.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G213970 PE=4 SV=1	[more]
M5X516_PRUPE	3.6e-40	48.42	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026735mg PE=4 SV=1	[more]
E0CUU2_VITVI	3.1e-39	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01260 PE=4 SV=...	[more]
A0A068UA19_COFCA	3.4e-38	51.70	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020082001 PE=4 SV=1	[more]
A0A061G1S0_THECC	4.1e-36	44.81	Sterol regulatory element-binding protein cleavage-activating protein, putative ...	[more]

BLAST of CmoCh18G013030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52780.1	8.2e-28	37.30	Protein of unknown function (DUF3464)	[more]
AT4G19100.1	2.0e-18	32.16	Protein of unknown function (DUF3464)	[more]

BLAST of CmoCh18G013030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077646\|ref\|XP_008439311.1\|	1.7e-70	74.87	PREDICTED: uncharacterized protein PAM68-like [Cucumis melo]	[more]
gi\|449465705\|ref\|XP_004150568.1\|	2.3e-64	70.74	PREDICTED: uncharacterized protein PAM68-like [Cucumis sativus]	[more]
gi\|596038045\|ref\|XP_007219815.1\|	5.2e-40	48.42	hypothetical protein PRUPE_ppa026735mg [Prunus persica]	[more]
gi\|645258318\|ref\|XP_008234831.1\|	2.6e-39	47.89	PREDICTED: uncharacterized protein PAM68-like [Prunus mume]	[more]
gi\|694405430\|ref\|XP_009377566.1\|	2.6e-39	48.65	PREDICTED: uncharacterized protein PAM68-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021855	PAM68-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G013030.1	CmoCh18G013030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	Protein of unknown function DUF3464	PFAM	PF11947	DUF3464	coord: 59..180 score: 1.2
None	No IPR available	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 71..183 score: 1.1
None	No IPR available	PANTHER	PTHR34575:SF1	SUBFAMILY NOT NAMED	coord: 71..183 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G013030	CmaCh18G012720	Cucurbita maxima (Rimu)	cmacmoB406
CmoCh18G013030	Cla006144	Watermelon (97103) v1	cmowmB366
CmoCh18G013030	MELO3C006958	Melon (DHL92) v3.5.1	cmomeB372
CmoCh18G013030	ClCG05G008430	Watermelon (Charleston Gray)	cmowcgB359
CmoCh18G013030	Lsi05G011890	Bottle gourd (USVL1VR-Ls)	cmolsiB372
CmoCh18G013030	Cp4.1LG09g00490	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G013030	MELO3C006958.2	Melon (DHL92) v3.6.1	cmomedB426
CmoCh18G013030	Cla97C05G090540	Watermelon (97103) v2	cmowmbB404
CmoCh18G013030	BhiUN557G28	Wax gourd	cmowgoB0502
CmoCh18G013030	Carg22133	Silver-seed gourd	carcmoB1003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G013030	Silver-seed gourd	carcmoB0968
CmoCh18G013030	Silver-seed gourd	carcmoB1328
CmoCh18G013030	Cucumber (Chinese Long) v3	cmocucB0476
CmoCh18G013030	Cucumber (Chinese Long) v3	cmocucB0479
CmoCh18G013030	Cucumber (Chinese Long) v3	cmocucB0490
CmoCh18G013030	Cucumber (Chinese Long) v3	cmocucB0491
CmoCh18G013030	Watermelon (97103) v2	cmowmbB385
CmoCh18G013030	Watermelon (97103) v2	cmowmbB410
CmoCh18G013030	Cucurbita moschata (Rifu)	cmocmoB201
CmoCh18G013030	Cucurbita moschata (Rifu)	cmocmoB243
CmoCh18G013030	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh18G013030	Cucurbita moschata (Rifu)	cmocmoB333
CmoCh18G013030	Cucumber (Gy14) v1	cgycmoB0248
CmoCh18G013030	Cucurbita maxima (Rimu)	cmacmoB255
CmoCh18G013030	Cucurbita maxima (Rimu)	cmacmoB292
CmoCh18G013030	Cucurbita maxima (Rimu)	cmacmoB327
CmoCh18G013030	Cucurbita maxima (Rimu)	cmacmoB591
CmoCh18G013030	Wild cucumber (PI 183967)	cmocpiB414
CmoCh18G013030	Wild cucumber (PI 183967)	cmocpiB401
CmoCh18G013030	Cucumber (Chinese Long) v2	cmocuB398
CmoCh18G013030	Cucumber (Chinese Long) v2	cmocuB409
CmoCh18G013030	Melon (DHL92) v3.5.1	cmomeB341
CmoCh18G013030	Melon (DHL92) v3.5.1	cmomeB368
CmoCh18G013030	Watermelon (Charleston Gray)	cmowcgB344
CmoCh18G013030	Watermelon (Charleston Gray)	cmowcgB363
CmoCh18G013030	Watermelon (97103) v1	cmowmB370
CmoCh18G013030	Watermelon (97103) v1	cmowmB380
CmoCh18G013030	Cucurbita pepo (Zucchini)	cmocpeB384
CmoCh18G013030	Cucurbita pepo (Zucchini)	cmocpeB386
CmoCh18G013030	Cucurbita pepo (Zucchini)	cmocpeB414
CmoCh18G013030	Bottle gourd (USVL1VR-Ls)	cmolsiB351
CmoCh18G013030	Bottle gourd (USVL1VR-Ls)	cmolsiB371
CmoCh18G013030	Cucumber (Gy14) v2	cgybcmoB324
CmoCh18G013030	Cucumber (Gy14) v2	cgybcmoB606
CmoCh18G013030	Cucumber (Gy14) v2	cgybcmoB607
CmoCh18G013030	Melon (DHL92) v3.6.1	cmomedB390
CmoCh18G013030	Melon (DHL92) v3.6.1	cmomedB424
CmoCh18G013030	Melon (DHL92) v3.6.1	cmomedB421