CmoCh18G012330.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G012330.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	MRNA, cds, clone: RAFL24-31-B07, putative
Location	Cmo_Chr18 : 12188055 .. 12191354 (+)
Sequence length	1055

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCGATCCCTTCCTTTTGCCTGAGATTGGTCCTGATGGCCTTGCCAGGGAAGCTCCTGTAATTGCCTACACTGAAAAGGTATTCGATCTGACTTTTGGGCTACAAGATTTTTCTTAATTTAATTCTTATTTTATCTTTTCAGTTTTGCTTATTTGTTATCGGATTATGTTGCAGATAATCGAGGAAGGGCGTCTTCAATTGAGAAAGTACGAATTTCTTTTATTACCTTTACGGATCTGGTTTTTCTCACATTATAACTCTCTTTATGTGTTTATTTGCTTATGATTGGTAAATTAGAAGTATTACTTGTTATTCTATCTTCCCTGTTCACGGAAATTTTAGTGTGGGGCGTTATTCTAGTTACATTCTTACATGGTAACAGATATGGATGCAGTAAGTCTTTGTTTGTAGTTTATCAAGTGTGCAATTAATGAAGGAAGTCTTGAAGGAATCATCTTGGCTTAGTTAATCTTTTTTTCTTCTTGGTGTATTACGAGTTTGTGTTGTAACCAAATGTCGATACCAGTGGTTGTACCAAAAGGTCACAACCATCGTTGCTCTGATACCACTTGTTGTAACCTAATGTCAAAACCTTCAATGCTTTGATACTAATTGTTATGGAGTGGAACGAATGTCTAACCTCTAAGCTCTGTTTAGGTTGAAGGTTAATTAAGTTAAGATCAATGACCTAGTGAATTGTAACAGCTAACCGATATTGTCTATTAAGCCCCTCATCACTTCCTGACGTAGTGAATTTCTTATAAGGGTGTGGCAACTTCTCTTTAGTGGATGTGTATTAAAACCTTGAGGGGAATCCCAGAAGGGAAAGCCCAAAAAGGACAATATCTACTAACGGTGTATTACGAGTTTGTGTTGTAACCTAATGTCAAACCTTTGATGCTTTGATACTGATGGTTGTACCAAAAGATCACAACCATCGTTGCTCTGATACCACTTGTTGTAACCTAATGTCAAAACCCTCAATGCTCTAATACTAATTGGTATGGGGTGGAACAAATGTCTAACCTCTAAGCTATGTTCAGGTTGAAGGTTAATTAAGTTAAGATCAATGACATACTGAATTGTAACGGCTAACAGATATTGTCTATTAAGCCCTCTCATCTCTTTCCAACGTAGTGAATTCCTTATATGGGTGTGGAAACCTCTCTTTAGTGGATGTGTATTAAAACCTTGAGGGAAAGCCCAAAAGGAAAAGCTCAAAGAGGACAATATCTACTAACGGTGAGTTTGGATTGTTACAAATGGTATCAAAGTCAAACATCGGGTGGTGTGTTAGCGAGGACGTTGGCTCCCAAGGGAGTGGATTGTGAGATCCCATGTCGGTTGGAGAGGGGAACGAAACATTCCTTAGGGTGTGGAAGCCTCTCTCTAATAGACGCGTTTTAAAACCTGAAGGAAAAGTCCAAAAATGACAATATCTGCTAGCGGTGGGCTTGGACTATTACATGAACTATAATTTGTATGGAGATTAAGTGAATAATCTGAACATGGGGAATTTTTATGTTTGGAAAAGATTTTTCGCATCATTCTTAAGTTTGAAGTTGGTATAGACGAATGAAGGATAGTGTTGAGGCAAAGTTCAGGAGTGTGTTGATTGGGGTAAATTGAGATATCCGAAGCATTGTAGGATAATGTGATCATTTACCATTGATTAACTCATAATGATATCTCAGACAGAGTTGATATTAGTTCCAACATCTCGTGTTGCTGATGGTTGTGATATTTGACGCCAATACTTCAAGTTGACAAGAACATAGAAGTAGACTCTTCATCAAGTTCTTTGTTTTTCTTTTCTTACCCATATCGTTAAATGGGAAATTTTGTTTATTGTTCGGGTCGTAATTTCATTCAGATACATTGATGAGAATTATTCTAAGATTCGAGATGTTGAACGAGAGTTGGCAGAGCTTACAATGGAGATGAAACTCACATCTGGTCCAAAAAAAGCAGGTTGAGCTTACTGTCAGTTGTTTTATATTCATTATTGATTTTCATTAACTGGCTTTGGCTGACCACCAAGCATGGTTACATATCTCTAGCACTCGAACTTCTGCGGAAGAAAATAGAGATGTCAACGGAAAGAATACATGCAGCCAAGTTGAAGGAAGAACAAGCAAAGAAGGTTTGCCCCTTGTCAATTTTTACACGAGTTTAGTGTAATACATTCATCTAGGCTGAGATCCCACACCGGTTGGAGAGGAGAATGAAAGGGAAAGTCCCTAGCATACGCGTTTTAAAACCTCGAGGGAAAGTCCAAAGAGGACAATATCTGCTAGTGGTGGGCTAGAGTCGTTACATGGGCTTTCTTCTTTAGATCGTTAATTGGAATTTAATGAATTGAGTCTGATGTTCTCCCTTCAGGCTTGGGAAGCAGCGTCGAAGGTAGTGCAGGACGAGGAAGCAATTAAGCAAAAGCTATGTGATGACTTGAATCATCTGGTACATAACTTTGCATTAAATTTGGTTATGTTAGAACTAACAAACACAACTTCTTGATAGTACTGTCGTTTATTCTTAATAGGTTCAAGAAAGCAATAATTCGCAGTTGACGAGGCTCGAAGAACTAAAACGAAGAATGGAAGCTTTGAATTCAAACCGAGTATCGACCTCTGTTTCTCAAGTAATGATTTCTGCTTGTTAGCCATTAACATAGCCCTGTTGAGAGATTTGATGTAAAACATATGGTTTTCAGGTTACACAAGAAGGCCAAACAATGGGGAATGCTCAGAACAGCAGAGTTGCAGATTCTTCTGGAGTTGCTACATCAACAGAAACAACAGGTGCAAAAGCAAATGAAAGTGCACGTATTCAAGCAGTCAGTGGTGATGCTCCAGTGGTGAATGGCCAAAATCAAAAGCCATCTTCTGAGACAGAAGTAAGAGGGAAAAAGAAAAACCAGTTTCATGGAAGAGGGAAGGGAATTGGAGCAGTGCCTAAAGGAAGAAGCTCTGCAGACTCTGGGTGGACTGGCTCTGGGTTTGATGTGGATGGTAGGGTATAAGCCTAAGCTCTATACTATCAACTTTCCAAATGTCAATATCAATATCAATACTCGATCAACTGTCAGAATGGTTCTTTTATTTAAACAACACCAAAAGAAAAATAAGTTTATTATAGGGTGGAATAGGAACTATACTCTTAGCCCCCATTTTTATAGTGTTCTTATTTATGCTTCTTGTTCAACTTGTTCCTGAAAGGTTAGTGTTTTCTGTACTGTCACTAGCTTGCCTGTTGAGTTGATTCTTCCACTAATGATATTTGACCAAACTAAGT

mRNA sequence

ATGGGTTCCGATCCCTTCCTTTTGCCTGAGATTGGTCCTGATGGCCTTGCCAGGGAAGCTCCTGTAATTGCCTACACTGAAAAGATAATCGAGGAAGGGCGTCTTCAATTGAGAAAATACATTGATGAGAATTATTCTAAGATTCGAGATGTTGAACGAGAGTTGGCAGAGCTTACAATGGAGATGAAACTCACATCTGGTCCAAAAAAAGCAGCACTCGAACTTCTGCGGAAGAAAATAGAGATGTCAACGGAAAGAATACATGCAGCCAAGTTGAAGGAAGAACAAGCAAAGAAGGCTTGGGAAGCAGCGTCGAAGGTAGTGCAGGACGAGGAAGCAATTAAGCAAAAGCTATGTGATGACTTGAATCATCTGGTTCAAGAAAGCAATAATTCGCAGTTGACGAGGCTCGAAGAACTAAAACGAAGAATGGAAGCTTTGAATTCAAACCGAGTATCGACCTCTGTTTCTCAAGTTACACAAGAAGGCCAAACAATGGGGAATGCTCAGAACAGCAGAGTTGCAGATTCTTCTGGAGTTGCTACATCAACAGAAACAACAGGTGCAAAAGCAAATGAAAGTGCACGTATTCAAGCAGTCAGTGGTGATGCTCCAGTGGTGAATGGCCAAAATCAAAAGCCATCTTCTGAGACAGAAGTAAGAGGGAAAAAGAAAAACCAGTTTCATGGAAGAGGGAAGGGAATTGGAGCAGTGCCTAAAGGAAGAAGCTCTGCAGACTCTGGGTGGACTGGCTCTGGGTTTGATGTGGATGGTAGGGTATAAGCCTAAGCTCTATACTATCAACTTTCCAAATGTCAATATCAATATCAATACTCGATCAACTGTCAGAATGGTTCTTTTATTTAAACAACACCAAAAGAAAAATAAGTTTATTATAGGGTGGAATAGGAACTATACTCTTAGCCCCCATTTTTATAGTGTTCTTATTTATGCTTCTTGTTCAACTTGTTCCTGAAAGGTTAGTGTTTTCTGTACTGTCACTAGCTTGCCTGTTGAGTTGATTCTTCCACTAATGATATTTGACCAAACTAAGT

Coding sequence (CDS)

ATGGGTTCCGATCCCTTCCTTTTGCCTGAGATTGGTCCTGATGGCCTTGCCAGGGAAGCTCCTGTAATTGCCTACACTGAAAAGATAATCGAGGAAGGGCGTCTTCAATTGAGAAAATACATTGATGAGAATTATTCTAAGATTCGAGATGTTGAACGAGAGTTGGCAGAGCTTACAATGGAGATGAAACTCACATCTGGTCCAAAAAAAGCAGCACTCGAACTTCTGCGGAAGAAAATAGAGATGTCAACGGAAAGAATACATGCAGCCAAGTTGAAGGAAGAACAAGCAAAGAAGGCTTGGGAAGCAGCGTCGAAGGTAGTGCAGGACGAGGAAGCAATTAAGCAAAAGCTATGTGATGACTTGAATCATCTGGTTCAAGAAAGCAATAATTCGCAGTTGACGAGGCTCGAAGAACTAAAACGAAGAATGGAAGCTTTGAATTCAAACCGAGTATCGACCTCTGTTTCTCAAGTTACACAAGAAGGCCAAACAATGGGGAATGCTCAGAACAGCAGAGTTGCAGATTCTTCTGGAGTTGCTACATCAACAGAAACAACAGGTGCAAAAGCAAATGAAAGTGCACGTATTCAAGCAGTCAGTGGTGATGCTCCAGTGGTGAATGGCCAAAATCAAAAGCCATCTTCTGAGACAGAAGTAAGAGGGAAAAAGAAAAACCAGTTTCATGGAAGAGGGAAGGGAATTGGAGCAGTGCCTAAAGGAAGAAGCTCTGCAGACTCTGGGTGGACTGGCTCTGGGTTTGATGTGGATGGTAGGGTATAA

Homology

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BLAST of CmoCh18G012330.1 vs. TrEMBL
Match: A0A0A0L8J1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G179140 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.2e-91
Identity = 203/259 (78.38%), Postives = 213/259 (82.24%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           MGSDP LLP                   IIEEG LQLRK IDEN SKIRDVERELA LTM
Sbjct: 1   MGSDPSLLP-------------------IIEEGSLQLRKCIDENLSKIRDVERELANLTM 60

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           EMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK WEAASKVVQ+EEA KQKLC+
Sbjct: 61  EMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKVWEAASKVVQEEEAAKQKLCE 120

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    +  TMG AQNSRV+DSSGV
Sbjct: 121 DLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVMTMGGAQNSRVSDSSGV 180

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPK 240
           AT+TE TGAK NE+   Q  S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPK
Sbjct: 181 ATTTE-TGAKPNENVPNQTTSDAAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPK 236

Query: 241 GRSSADSGWTGSGFDVDGR 260
           GRSSADSGWTGSGFDVDGR
Sbjct: 241 GRSSADSGWTGSGFDVDGR 236

[Close]

BLAST of CmoCh18G012330.1 vs. TrEMBL
Match: A0A061G7M2_THECC (MRNA, cds, clone: RAFL24-31-B07, putative OS=Theobroma cacao GN=TCM_015047 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-82
Identity = 177/259 (68.34%), Postives = 210/259 (81.08%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           M S+P L PEIGPDGLAREAPVIAYTEKIIEE +LQL+KYI+ENYSKIRDVEREL+ LTM
Sbjct: 1   MASNPALKPEIGPDGLAREAPVIAYTEKIIEEEQLQLKKYIEENYSKIRDVERELSNLTM 60

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           EMKLT+GPKKAALE LRKKIEMSTERIH AK KEEQA+K WEAA K + DEEAIKQKLC+
Sbjct: 61  EMKLTAGPKKAALEHLRKKIEMSTERIHIAKQKEEQARKTWEAAVKALNDEEAIKQKLCE 120

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DLN+LVQES+NSQ  RLEELKRR+EALN +R ST       + + +G+AQ +   D+S V
Sbjct: 121 DLNNLVQESSNSQFARLEELKRRLEALNPSRASTLSH---HDRKAIGSAQGAATGDASSV 180

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPK 240
             +T+ +G+ A+E+   Q   G+   +NGQNQ P+++ EV+GKKK+QF GRGKGIGAVPK
Sbjct: 181 PQTTQ-SGSTASENVPNQRNDGNVLAMNGQNQLPTNDGEVKGKKKSQFQGRGKGIGAVPK 240

Query: 241 GRSSADSGWTGSGFDVDGR 260
           GR SA  GWTG+GFDVDGR
Sbjct: 241 GRGSAAPGWTGAGFDVDGR 255

[Close]

BLAST of CmoCh18G012330.1 vs. TrEMBL
Match: W9S9H6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002797 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.7e-80
Identity = 175/256 (68.36%), Postives = 203/256 (79.30%), Query Frame = 1


Query: 4   DPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMK 63
           +P LLPEIGPDGL REAPVIAYTEKIIEE +LQLRKYI+ENYS+IRDVER+LA LTMEMK
Sbjct: 8   NPSLLPEIGPDGLPREAPVIAYTEKIIEEEQLQLRKYIEENYSRIRDVERKLANLTMEMK 67

Query: 64  LTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCDDLN 123
           LT+GPKKAALE LRKKIE+ TERI  AKLKEEQA+KAWEAASK V+DEE +KQKLC+DLN
Sbjct: 68  LTAGPKKAALEHLRKKIEIQTERIRLAKLKEEQAQKAWEAASKAVKDEEEMKQKLCEDLN 127

Query: 124 HLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATS 183
            LV ES+N+Q +RLEELKRR+EALN +R ST+   V  +G+  G AQ     D+S    S
Sbjct: 128 QLVHESSNTQFSRLEELKRRLEALNPSRASTNF--VPHDGKATGPAQTILAPDASSATNS 187

Query: 184 TETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRS 243
           TE +G  A ++   +   G+ PV NG NQ+ S E E RGKKK+QFHGRGKGIGAVPKGR 
Sbjct: 188 TEQSGG-ARKTIPNEGNGGNVPVTNGLNQQASVEGEGRGKKKSQFHGRGKGIGAVPKGRG 247

Query: 244 SADSGWTGSGFDVDGR 260
           S   GWTG+GFDVDGR
Sbjct: 248 SPAPGWTGAGFDVDGR 260

[Close]

BLAST of CmoCh18G012330.1 vs. TrEMBL
Match: D7T1T6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g02350 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.6e-78
Identity = 169/259 (65.25%), Postives = 202/259 (77.99%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           M  +P L PEIGPDGLAREAPVIAYTE+IIEE +LQL+KYI+ENYSKIRDVEREL+ LT 
Sbjct: 1   MAQNPSLAPEIGPDGLAREAPVIAYTERIIEEEQLQLKKYIEENYSKIRDVERELSNLTF 60

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           E+KLT+GPKKAALELLRKKIEMSTERI  AK KEEQA+K WEAASK V+DEEA+KQKLCD
Sbjct: 61  ELKLTAGPKKAALELLRKKIEMSTERISVAKQKEEQARKVWEAASKAVKDEEAVKQKLCD 120

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DL+ LVQES+++Q +RLEELKRR+EALN +R S S S    +G+ +   Q+S V D+S  
Sbjct: 121 DLSQLVQESSHTQFSRLEELKRRLEALNPSRASISGS---HDGKLLPQPQSSTVPDASSA 180

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPK 240
               + +G  A E+   Q   G+ P  NG NQ+P+ E E RGKKK+   GRG+GIGAVPK
Sbjct: 181 PLIVDPSGG-AGENVANQGNGGNVPATNGHNQQPNVEGEGRGKKKSFIQGRGRGIGAVPK 240

Query: 241 GRSSADSGWTGSGFDVDGR 260
           GR S+  GWTG+GFDVDGR
Sbjct: 241 GRGSSAPGWTGAGFDVDGR 255

[Close]

BLAST of CmoCh18G012330.1 vs. TrEMBL
Match: A0A067F232_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025205mg PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 169/259 (65.25%), Postives = 204/259 (78.76%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           M SDP L PEIGPDGL+REAPVIAYTE+ IEE +LQLRK+I+ENYSKIRDVERELA LTM
Sbjct: 1   MASDPSLQPEIGPDGLSREAPVIAYTERKIEEEQLQLRKFIEENYSKIRDVERELANLTM 60

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           EMKLT+GPKKAALE LRKKIEMSTERI  AK KEEQA+K WEAAS+ V+DEEA+KQKLC+
Sbjct: 61  EMKLTAGPKKAALEHLRKKIEMSTERIRVAKQKEEQAQKVWEAASQAVKDEEAMKQKLCE 120

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DLN+LV+ES+++Q +RLEELKRR+EALN +R S   +    +G+ MG AQ S V+D+  +
Sbjct: 121 DLNNLVKESSSTQFSRLEELKRRLEALNPSRAS---APSPYDGKPMGPAQISLVSDTPAL 180

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPK 240
             S    G   N ++  Q   G+APV++G NQ P+ E EV+GKKK  F GRGKG+G VPK
Sbjct: 181 PLSGTGAGVAQNATSN-QGDGGNAPVMSGHNQHPTVEGEVKGKKKTHFQGRGKGVGIVPK 240

Query: 241 GRSSADSGWTGSGFDVDGR 260
           GR +   GWTG+GFDVDGR
Sbjct: 241 GRGTGAPGWTGAGFDVDGR 255

[Close]

BLAST of CmoCh18G012330.1 vs. TAIR10
Match: AT5G51840.1 (AT5G51840.1 unknown protein)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-69
Identity = 160/260 (61.54%), Postives = 192/260 (73.85%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           M SDP L  EIG DGLAREAPVIAYTEKIIEE ++QLRKYI+ENY+KIRDVERE   L+M
Sbjct: 2   MASDPKLKAEIGADGLAREAPVIAYTEKIIEEEQVQLRKYIEENYTKIRDVEREFGNLSM 61

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           E+KLT+GPKKAA+E LRKKIE+STERIHAAKLKEE+A+KA+EAASKVV+DEEA KQ LC+
Sbjct: 62  ELKLTAGPKKAAMEHLRKKIEVSTERIHAAKLKEEEARKAFEAASKVVKDEEATKQSLCE 121

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DLN LVQ+S+N+Q  RLEELKRR+EALN NR STS+ QV QE +T        V DS+  
Sbjct: 122 DLNSLVQQSSNTQYARLEELKRRLEALNPNRSSTSIQQV-QEPETKS------VVDSAPA 181

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSS-ETEVRGKKKNQFHGRGKGIGAVP 240
           A + +T   K   +       G+        Q+P++ E E + KKK Q  GRG+GIG + 
Sbjct: 182 ANANQTHPGKPENN------HGNEEGGKEHGQRPATAEGESKAKKKPQNQGRGRGIGIMN 241

Query: 241 KGRSSADSGWTGSGFDVDGR 260
           KGR     GWTG+GFDVDGR
Sbjct: 242 KGRG----GWTGAGFDVDGR 244

[Close]

BLAST of CmoCh18G012330.1 vs. NCBI nr
Match: gi|778679425|ref|XP_011651127.1| (PREDICTED: uncharacterized protein LOC101210795 [Cucumis sativus])

HSP 1 Score: 391.0 bits (1003), Expect = 1.7e-105
Identity = 221/259 (85.33%), Postives = 231/259 (89.19%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           MGSDP LLP IGPDGLAREAPVIAYTEKIIEEG LQLRK IDEN SKIRDVERELA LTM
Sbjct: 1   MGSDPSLLPVIGPDGLAREAPVIAYTEKIIEEGSLQLRKCIDENLSKIRDVERELANLTM 60

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           EMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK WEAASKVVQ+EEA KQKLC+
Sbjct: 61  EMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKVWEAASKVVQEEEAAKQKLCE 120

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    +  TMG AQNSRV+DSSGV
Sbjct: 121 DLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVMTMGGAQNSRVSDSSGV 180

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPK 240
           AT+TE TGAK NE+   Q  S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPK
Sbjct: 181 ATTTE-TGAKPNENVPNQTTSDAAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPK 240

Query: 241 GRSSADSGWTGSGFDVDGR 260
           GRSSADSGWTGSGFDVDGR
Sbjct: 241 GRSSADSGWTGSGFDVDGR 255

[Close]

BLAST of CmoCh18G012330.1 vs. NCBI nr
Match: gi|700202191|gb|KGN57324.1| (hypothetical protein Csa_3G179140 [Cucumis sativus])

HSP 1 Score: 344.4 bits (882), Expect = 1.8e-91
Identity = 203/259 (78.38%), Postives = 213/259 (82.24%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           MGSDP LLP                   IIEEG LQLRK IDEN SKIRDVERELA LTM
Sbjct: 1   MGSDPSLLP-------------------IIEEGSLQLRKCIDENLSKIRDVERELANLTM 60

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           EMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK WEAASKVVQ+EEA KQKLC+
Sbjct: 61  EMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKVWEAASKVVQEEEAAKQKLCE 120

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    +  TMG AQNSRV+DSSGV
Sbjct: 121 DLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVMTMGGAQNSRVSDSSGV 180

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPK 240
           AT+TE TGAK NE+   Q  S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPK
Sbjct: 181 ATTTE-TGAKPNENVPNQTTSDAAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPK 236

Query: 241 GRSSADSGWTGSGFDVDGR 260
           GRSSADSGWTGSGFDVDGR
Sbjct: 241 GRSSADSGWTGSGFDVDGR 236

[Close]

BLAST of CmoCh18G012330.1 vs. NCBI nr
Match: gi|659077326|ref|XP_008439146.1| (PREDICTED: uncharacterized protein LOC103484029 [Cucumis melo])

HSP 1 Score: 325.1 bits (832), Expect = 1.1e-85
Identity = 188/233 (80.69%), Postives = 200/233 (85.84%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           MGSDP LLPEIGPDGLAREAPVIAYTEKIIEEG LQLRK IDEN SKIRDVERELA LTM
Sbjct: 1   MGSDPSLLPEIGPDGLAREAPVIAYTEKIIEEGSLQLRKCIDENLSKIRDVERELANLTM 60

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           EMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK WEAASKVVQDEEA KQKLC+
Sbjct: 61  EMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKVWEAASKVVQDEEATKQKLCE 120

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    + + MG AQNSRV+DSS V
Sbjct: 121 DLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKAMGGAQNSRVSDSSAV 180

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGK 234
           AT+TE TGAK NE+   Q  S  APV+NGQNQKP SETE RGK+K  F   G+
Sbjct: 181 ATTTE-TGAKTNENVPNQTTSDAAPVINGQNQKPPSETEGRGKRKTSFMEEGR 229

[Close]

BLAST of CmoCh18G012330.1 vs. NCBI nr
Match: gi|1009122530|ref|XP_015878050.1| (PREDICTED: uncharacterized protein LOC107414452 [Ziziphus jujuba])

HSP 1 Score: 314.7 bits (805), Expect = 1.5e-82
Identity = 181/256 (70.70%), Postives = 211/256 (82.42%), Query Frame = 1


Query: 4   DPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTMEMK 63
           +P LLPEIGPDGL REAPVIAYTEKIIEE +LQL+KYI+ENYSKIRDVERELA LTME+K
Sbjct: 8   NPSLLPEIGPDGLPREAPVIAYTEKIIEEEQLQLKKYIEENYSKIRDVERELANLTMEVK 67

Query: 64  LTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCDDLN 123
           LT+GPKKAALE +RKKIEMSTERI  AKLKEEQAKKAWEAAS+VV+DEEA+KQKLC+DLN
Sbjct: 68  LTAGPKKAALEHMRKKIEMSTERIRLAKLKEEQAKKAWEAASQVVKDEEAMKQKLCEDLN 127

Query: 124 HLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGVATS 183
           +LVQES+NSQ +RLEELKRR+EALN  R STS   V  +G+++G A +  V D+S V  S
Sbjct: 128 NLVQESSNSQFSRLEELKRRLEALNPGRASTS---VLHDGKSIGPAHSITVPDASSVPHS 187

Query: 184 TETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPKGRS 243
            E  GA  NE+   +   G+ P +NG  Q+PS+E E +GKKK+QFHGRGKGIGAVPKGR 
Sbjct: 188 VEAGGA-VNENVPNKGNVGNTPGMNG--QQPSTEGEGKGKKKSQFHGRGKGIGAVPKGRG 247

Query: 244 SADSGWTGSGFDVDGR 260
           S   GWTG+GFDVDGR
Sbjct: 248 SQGPGWTGAGFDVDGR 257

[Close]

BLAST of CmoCh18G012330.1 vs. NCBI nr
Match: gi|590672185|ref|XP_007038538.1| (MRNA, cds, clone: RAFL24-31-B07, putative [Theobroma cacao])

HSP 1 Score: 314.3 bits (804), Expect = 2.0e-82
Identity = 177/259 (68.34%), Postives = 210/259 (81.08%), Query Frame = 1


Query: 1   MGSDPFLLPEIGPDGLAREAPVIAYTEKIIEEGRLQLRKYIDENYSKIRDVERELAELTM 60
           M S+P L PEIGPDGLAREAPVIAYTEKIIEE +LQL+KYI+ENYSKIRDVEREL+ LTM
Sbjct: 1   MASNPALKPEIGPDGLAREAPVIAYTEKIIEEEQLQLKKYIEENYSKIRDVERELSNLTM 60

Query: 61  EMKLTSGPKKAALELLRKKIEMSTERIHAAKLKEEQAKKAWEAASKVVQDEEAIKQKLCD 120
           EMKLT+GPKKAALE LRKKIEMSTERIH AK KEEQA+K WEAA K + DEEAIKQKLC+
Sbjct: 61  EMKLTAGPKKAALEHLRKKIEMSTERIHIAKQKEEQARKTWEAAVKALNDEEAIKQKLCE 120

Query: 121 DLNHLVQESNNSQLTRLEELKRRMEALNSNRVSTSVSQVTQEGQTMGNAQNSRVADSSGV 180
           DLN+LVQES+NSQ  RLEELKRR+EALN +R ST       + + +G+AQ +   D+S V
Sbjct: 121 DLNNLVQESSNSQFARLEELKRRLEALNPSRASTLSH---HDRKAIGSAQGAATGDASSV 180

Query: 181 ATSTETTGAKANESARIQAVSGDAPVVNGQNQKPSSETEVRGKKKNQFHGRGKGIGAVPK 240
             +T+ +G+ A+E+   Q   G+   +NGQNQ P+++ EV+GKKK+QF GRGKGIGAVPK
Sbjct: 181 PQTTQ-SGSTASENVPNQRNDGNVLAMNGQNQLPTNDGEVKGKKKSQFQGRGKGIGAVPK 240

Query: 241 GRSSADSGWTGSGFDVDGR 260
           GR SA  GWTG+GFDVDGR
Sbjct: 241 GRGSAAPGWTGAGFDVDGR 255

The following BLAST results are available for this feature:

BLAST of CmoCh18G012330.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh18G012330.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J1_CUCSA	1.2e-91	78.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G179140 PE=4 SV=1	[more]
A0A061G7M2_THECC	1.4e-82	68.34	MRNA, cds, clone: RAFL24-31-B07, putative OS=Theobroma cacao GN=TCM_015047 PE=4 ...	[more]
W9S9H6_9ROSA	1.7e-80	68.36	Uncharacterized protein OS=Morus notabilis GN=L484_002797 PE=4 SV=1	[more]
D7T1T6_VITVI	4.6e-78	65.25	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g02350 PE=4 SV=...	[more]
A0A067F232_CITSI	1.3e-77	65.25	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025205mg PE=4 SV=1	[more]

BLAST of CmoCh18G012330.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51840.1	2.0e-69	61.54	unknown protein	[more]

BLAST of CmoCh18G012330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679425\|ref\|XP_011651127.1\|	1.7e-105	85.33	PREDICTED: uncharacterized protein LOC101210795 [Cucumis sativus]	[more]
gi\|700202191\|gb\|KGN57324.1\|	1.8e-91	78.38	hypothetical protein Csa_3G179140 [Cucumis sativus]	[more]
gi\|659077326\|ref\|XP_008439146.1\|	1.1e-85	80.69	PREDICTED: uncharacterized protein LOC103484029 [Cucumis melo]	[more]
gi\|1009122530\|ref\|XP_015878050.1\|	1.5e-82	70.70	PREDICTED: uncharacterized protein LOC107414452 [Ziziphus jujuba]	[more]
gi\|590672185\|ref\|XP_007038538.1\|	2.0e-82	68.34	MRNA, cds, clone: RAFL24-31-B07, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh18G012330	CmoCh18G012330	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh18G012330.1	CmoCh18G012330.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G012330.1.exon.1	CmoCh18G012330.1.exon.1	exon
CmoCh18G012330.1.exon.2	CmoCh18G012330.1.exon.2	exon
CmoCh18G012330.1.exon.3	CmoCh18G012330.1.exon.3	exon
CmoCh18G012330.1.exon.4	CmoCh18G012330.1.exon.4	exon
CmoCh18G012330.1.exon.5	CmoCh18G012330.1.exon.5	exon
CmoCh18G012330.1.exon.6	CmoCh18G012330.1.exon.6	exon
CmoCh18G012330.1.exon.7	CmoCh18G012330.1.exon.7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G012330.1.CDS.1	CmoCh18G012330.1.CDS.1	CDS
CmoCh18G012330.1.CDS.2	CmoCh18G012330.1.CDS.2	CDS
CmoCh18G012330.1.CDS.3	CmoCh18G012330.1.CDS.3	CDS
CmoCh18G012330.1.CDS.4	CmoCh18G012330.1.CDS.4	CDS
CmoCh18G012330.1.CDS.5	CmoCh18G012330.1.CDS.5	CDS
CmoCh18G012330.1.CDS.6	CmoCh18G012330.1.CDS.6	CDS
CmoCh18G012330.1.CDS.7	CmoCh18G012330.1.CDS.7	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G012330.1.three_prime_UTR.1	CmoCh18G012330.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 41..61 score: -coord: 130..157 score: -coord: 73..93 scor
None	No IPR available	PANTHER	PTHR35315	FAMILY NOT NAMED	coord: 1..260 score: 7.2E