CmoCh18G011060.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G011060.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProtein Ycf2
LocationCmo_Chr18 : 11492932 .. 11496525 (+)
Sequence length627
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTATTTATGGCCCTTTTCTACAGGGAAACCCAAATTCATTGTAAGATAAAAAAATCAATAGTTACAAAAGGCCGATAGGATGAAATACACCTTCATCGATTAGCTTACACGTTGTTCTGAGTTTATAAAAGGAAGGGAAAACGGTGTTCCCTATATAGAAAATTAACATCTCGATAAAATTTCAAGGTCCAGAGCCAAAGACTCCAAAAACAGATTCTCCCAGTGATAGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGGATCTCTTCTCTAACCACTTCATCGTGTAAGCAAACAAATGATCGGAACGAGATCCTCATTCGCCCTCAAGAACAAATTCCAACAGTTAAACGAAATCTGTGAAAGGTGCACCTCCTCCCCCCTCCCCCTCCCCTCGGGGCAGGAGAGAAGGTCCACAAGAGACCAAGCTCAATACGACGTTCTGGAGATCAGAGAAATGAAATTCAACAATGAGAAACAAGTAAACAGAAAGAAAAAACAAATAAAACACCATCATTCATTCAACACATACTCACAAACAAAACAAGCATTACAAAGTAACAACTTCGAAATCGGAGAAAGAACTCACCTGAATTCTATAGATCCTTCACGATCCAACAAATTAAGTAATCAGATTCCCCACCCAAATCGACGCTATCCGTGAGCCGGCGCCGTCAGAGCTTCGCAAACACGAGAATGAGAGGCCTTCGATGAATCAATATCAAATCCAAGAAACAGGCAAGAGCAAAGAATCGTCGGAGCTAAGTGAAGAGAGAAATGAAACCCACACACAAATTCTCTCACAGTTTCCTCAATCTCTATCTCTCTTCGTTTTATTCTCCGTTTTGCCTCTCAGAAATCCGTCCTCCGTGAACGCTCTTTAACTCGAGTGAGAGAAGCCAGGTTAAAACAACTAACCCTGGTTACATGCCGACCCACTCTCTTGCTCTGGCCTTTCAGATTCGAACACTCTGGAAGGAATGGTGAGAGCCGTTGATGATGAGAGATGCTGGAATTAATGACCGTACGATGAAAGGGGATGGTGACGTGGAGATAAGAGATTCGTTAGTGACGTGGCAGGTCACCTCGAATTGTGGGACACCTGGTTTCATCAGCGACCGGGCCGGGCGGGTTTTCTTATTTTGGGTTTGCCCTTTCGAATCTGTAGTTCTCTGTACTACCCAGTTTCCTGCCCCAATCTGACCGTCAATTTTCACACCATTGAATTTACCAAATTGCCCCCATGTACTTTTTTCCTTTTTTTTCTTTTTCTTACCTCAATTAAATAAATATACCCTCCTTGTCATTTCCAAAATATTTGATCTCCTTCACTTTTATTTTGTTTTTATTATTTTATTTTTTTTGTTTGACATTTACATTTTTAAAAAATATCTTAAAATCATATTATCCACTTATACCAAATAAATAACCAATAAAGAAGATATAATAAAAATCACGAACCTCTACCATAGTATGATATTGTTCCCTTTGAGCCTGAGCTCTCATAACTTTGATTATGATTTTTTAAAAAAAAAAACCTCGTACCAATGAAAATAATGTTTCTTACTTATAAACTCCAAGATACCACGAGTAATGGGCATGCATTATGATTTCTCGAACGTTTTGTCTTGATCTGAATTTTGTCGTGCATGGGTATTTTGTGTTACTTTAACTATTTTATATTACTATTATTGTTGTTTTATTGGCCTTTTCATAATTGAGAAAGAGTCGTTTTATTTAAGCCATGCCAGCTGGTTATGAAAATGACGTGTCAATTCTATCATCATCTTCCAATTTGACCGTAAAACGAATTATTAATTTATTTATTGTATTAACTTCTTTTTCTCCCTTAATTCCGAACCGGAATGGGACGGTTCAGCTGAGTCAGAGTCCACGCATGAACGAGAATCCCACGTGGTGTTTCCGCGTAGGATGCTGCCAATTCAAGACACGATAATCTCACTAGTAATTCCAAAATTTTATTTCCTACGTGTAGGCATTATCCTCTCACGTGTCTTTTGATTCTTCCAAACCGCGGCATACACGCTCACAGTTTTCTTCATGACACACAGACACAAAGCTGACTGGATAAATACTTTTTTTCTTAATTTAAAAAGGACTATTTATTATTATTTTATTAAATAATTGTAATAAATTTAATAGAGTACACTCTCGAGTCTGCCCATGGTTTTAGTGTCTACTTTATAAATGTAGACTAGATATATTAAATTCCTATTTATTAGTTTTTTAAATACTAAAAATGATTAATATTTTAAATTACCCAAAATATTTTATTTAAATTTATTTAAGTTAAGTTGAGTTAAAATAAATAAAAAATTTATAAAGTTAATTTTAAAATATAATTTGTGCTTATGTTTTTTTTTTTTATTTAGTTTAGTAATTATTTGTTTATAATTTATTATTTAATAATTTTTTTAAATAATATCTTTTACGACATTAAATCTTACCCATATAGGTAAGAAATCTCAATAAATCTGAGTAACATTGATTTTTTAGGATAAAAACTAAATTATTACCATTTTTAAATATATGGATAAAAATTAAAGTTTTAGAATAAAAATAGTTTTTAATATAATTAAAAGTATTAATATTTGAAGCTTAAATTTTTTTTAGAGACTTTTTTTAGGATGTTACTGGAGATAGAAAAAATAAAATCAAAATTATTATTATTTTTTAAATATTTTATTATTTCAATTTTATCCTCGCAAATTTACATCAACTAAAACCAAATACAATGGGTATATAGGTCATTTTAAGAAATCTATTGAACTTGAAATTGGGCTTTATCGCTACAGGCCGAAAAGTGGAAGGCCCAAGGCCCAAGGCCCATTATTGCAAGCAAAACAATATATCGAAAATATTTAATTTTCTGAATAGTAAATAATTATGAAAAATATATAACTTTTTTCTTATTATTTATTGATAAAAATGACTGTGAATGAATCTATTTGGTACAAGAATTACGAAAATTTTAATACTATAAATTTATTTTTTTAATCAAAATTGAAATTTACTAAACAATATAAAAAAAAATTAAAAAAATATAGTGAACAATTATTTATTTTTTACCAGCAATAAACTCAAAAAAATCAATGAAATATCTTCGTTTATGTCAATAAAAAAAAATTAAAATATTAATTTTTTTTAATAAGATTAGAAATTAAATTTTTATTCATATATTTTAATTTATTAAATATTTGATTAACAGAAAGAAATTTGAATCTGTGTTTGCATTTTTCGATTCTAACTATGGGATTACAGCTATTCTTGTTTTTCAAACATAAATAAGGCACCCGTACAGATGACAGCCATGGAACCAAACCAGAAAAAATGGGGTCACTTGTTATGAACTCATTGAGAATGATTGTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGTTCGGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGGCCGAACCCAGAAATCCCTTAAATATGATACAAAATGGATCTTATTCTATCAGGGTAGTCATGTTCATGTTTGTTCGATAA

mRNA sequence

ATGCATTATTTATGGCCCTTTTCTACAGGGAAACCCAAATTCATTAAATCCGTCCTCCGTGAACGCTCTTTAACTCGAGTGAGAGAAGCCAGGTTAAAACAACTAACCCTGGTTACATGCCGACCCACTCTCTTGCTCTGGCCTTTCAGATTCGAACACTCTGGAAGGAATGGTCACCTCGAATTGTGGGACACCTGGTTTCATCAGCGACCGGGCCGGGCGGGTTTTCTTATTTTGGGTTTGCCCTTTCGAATCTGTAGTTCTCTGTACTACCCAGTTTCCTGCCCCAATCTGACCGATGCTGCCAATTCAAGACACGATAATCTCACTAGTAATTCCAAAATTTTATTTCCTACGTGCCGAAAAGTGGAAGGCCCAAGGCCCAAGGCCCATTATTGCAAGCAAAACAATATATCGAAAATATTTAATTTTCTGAATATTCATGGCCTATTAGAAGTAGAAGGCGTTCGGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGGCCGAACCCAGAAATCCCTTAAATATGATACAAAATGGATCTTATTCTATCAGGGTAGTCATGTTCATGTTTGTTCGATAA

Coding sequence (CDS)

ATGCATTATTTATGGCCCTTTTCTACAGGGAAACCCAAATTCATTAAATCCGTCCTCCGTGAACGCTCTTTAACTCGAGTGAGAGAAGCCAGGTTAAAACAACTAACCCTGGTTACATGCCGACCCACTCTCTTGCTCTGGCCTTTCAGATTCGAACACTCTGGAAGGAATGGTCACCTCGAATTGTGGGACACCTGGTTTCATCAGCGACCGGGCCGGGCGGGTTTTCTTATTTTGGGTTTGCCCTTTCGAATCTGTAGTTCTCTGTACTACCCAGTTTCCTGCCCCAATCTGACCGATGCTGCCAATTCAAGACACGATAATCTCACTAGTAATTCCAAAATTTTATTTCCTACGTGCCGAAAAGTGGAAGGCCCAAGGCCCAAGGCCCATTATTGCAAGCAAAACAATATATCGAAAATATTTAATTTTCTGAATATTCATGGCCTATTAGAAGTAGAAGGCGTTCGGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGGCCGAACCCAGAAATCCCTTAAATATGATACAAAATGGATCTTATTCTATCAGGGTAGTCATGTTCATGTTTGTTCGATAA
Homology
[Close]
BLAST of CmoCh18G011060.1 vs. Swiss-Prot
Match: YCF2_SOYBN (Protein Ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-17
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]
BLAST of CmoCh18G011060.1 vs. Swiss-Prot
Match: YCF2_PHAVU (Protein Ycf2 OS=Phaseolus vulgaris GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-16
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLN IQNGSYSI    F++
Sbjct: 1981 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNRIQNGSYSIVDQRFLY 2038

[Close]
BLAST of CmoCh18G011060.1 vs. Swiss-Prot
Match: YCF2_PLAOC (Protein Ycf2 OS=Platanus occidentalis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEGV +G  SS+TEKDCS+FDNDRVTLLLR+EPRNPL+M+QNGS SI    F++
Sbjct: 1994 VHGLLEVEGVLVG--SSRTEKDCSQFDNDRVTLLLRSEPRNPLDMMQNGSCSIVDQRFLY 2051

[Close]
BLAST of CmoCh18G011060.1 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.4e-16
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG   G  SS TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI   +F++
Sbjct: 1696 VHGLLEVEGALFG--SSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSSSIVDQIFLY 1753

[Close]
BLAST of CmoCh18G011060.1 vs. Swiss-Prot
Match: YCF2_LOTJA (Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-16
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FDNDRVTLLLR EP NPLNMIQNGS SI    F++
Sbjct: 2001 VHGLLEVEGALVG--SSRTEKDCSQFDNDRVTLLLRPEPSNPLNMIQNGSCSIVDQRFLY 2058

[Close]
BLAST of CmoCh18G011060.1 vs. TrEMBL
Match: A0A158UR81_9FABA (Hypothetical chloroplast RF21 OS=Apios americana GN=ycf2 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FDNDRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1447 VHGLLEVEGALVG--SSRTEKDCSQFDNDRVTLLLRSEPRNPLNMIQNGSYSIVDHRFLY 1504

[Close]
BLAST of CmoCh18G011060.1 vs. TrEMBL
Match: R9ZS63_GLYTO (Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]
BLAST of CmoCh18G011060.1 vs. TrEMBL
Match: R9ZV93_GLYTO (Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]
BLAST of CmoCh18G011060.1 vs. TrEMBL
Match: R9ZTQ7_GLYTO (Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]
BLAST of CmoCh18G011060.1 vs. TrEMBL
Match: R9ZPU3_9FABA (Protein Ycf2 OS=Glycine cyrtoloba GN=ycf2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]
BLAST of CmoCh18G011060.1 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 77.8 bits (190), Expect = 8.8e-15
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEV+G  +G  SS+TEKDCS+FDNDRVTLL R+EPR+PL M+Q+GS SI    F++
Sbjct: 2002 VHGLLEVQGALVG--SSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLY 2059

[Close]
BLAST of CmoCh18G011060.1 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 77.8 bits (190), Expect = 8.8e-15
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEV+G  +G  SS+TEKDCS+FDNDRVTLL R+EPR+PL M+Q+GS SI    F++
Sbjct: 2002 VHGLLEVQGALVG--SSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLY 2059

[Close]
BLAST of CmoCh18G011060.1 vs. NCBI nr
Match: gi|91214183|ref|YP_538807.1| (Ycf2 [Glycine max])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]
BLAST of CmoCh18G011060.1 vs. NCBI nr
Match: gi|734345778|gb|KHN10867.1| (Protein ycf2 [Glycine soja])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147 IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
           +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 47  VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 104

[Close]
BLAST of CmoCh18G011060.1 vs. NCBI nr
Match: gi|526176373|ref|YP_008146161.1| (hypothetical chloroplast RF2 (chloroplast) [Glycine syndetika])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]
BLAST of CmoCh18G011060.1 vs. NCBI nr
Match: gi|1012339194|gb|KYP50431.1| (Protein ycf2, partial [Cajanus cajan])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147 IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
           +HGLLEVEG  +G  SS+TEKDCS+FDNDRVTLLLR+EPRNPLNMIQNG YSI    F++
Sbjct: 21  VHGLLEVEGALVG--SSRTEKDCSQFDNDRVTLLLRSEPRNPLNMIQNGFYSIVDQRFLY 78

[Close]
BLAST of CmoCh18G011060.1 vs. NCBI nr
Match: gi|526176105|ref|YP_008145915.1| (hypothetical chloroplast RF2 (chloroplast) [Glycine canescens])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

The following BLAST results are available for this feature:
BLAST of CmoCh18G011060.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YCF2_SOYBN4.0e-1773.33Protein Ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1[more]
YCF2_PHAVU2.0e-1671.67Protein Ycf2 OS=Phaseolus vulgaris GN=ycf2-A PE=3 SV=1[more]
YCF2_PLAOC2.6e-1671.67Protein Ycf2 OS=Platanus occidentalis GN=ycf2-A PE=3 SV=1[more]
YCF2_CUCSA3.4e-1673.33Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1[more]
YCF2_LOTJA7.5e-1671.67Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1[more]
BLAST of CmoCh18G011060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A158UR81_9FABA1.2e-1575.00Hypothetical chloroplast RF21 OS=Apios americana GN=ycf2 PE=4 SV=1[more]
R9ZS63_GLYTO4.4e-1573.33Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1[more]
R9ZV93_GLYTO4.4e-1573.33Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1[more]
R9ZTQ7_GLYTO4.4e-1573.33Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1[more]
R9ZPU3_9FABA4.4e-1573.33Protein Ycf2 OS=Glycine cyrtoloba GN=ycf2 PE=3 SV=1[more]
BLAST of CmoCh18G011060.1 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00860.18.8e-1563.33ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
ATCG01280.18.8e-1563.33ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core[more]
BLAST of CmoCh18G011060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|91214183|ref|YP_538807.1|6.3e-1573.33Ycf2 [Glycine max][more]
gi|734345778|gb|KHN10867.1|6.3e-1573.33Protein ycf2 [Glycine soja][more]
gi|526176373|ref|YP_008146161.1|6.3e-1573.33hypothetical chloroplast RF2 (chloroplast) [Glycine syndetika][more]
gi|1012339194|gb|KYP50431.1|6.3e-1573.33Protein ycf2, partial [Cajanus cajan][more]
gi|526176105|ref|YP_008145915.1|6.3e-1573.33hypothetical chloroplast RF2 (chloroplast) [Glycine canescens][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0005524 ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh18G011060CmoCh18G011060gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh18G011060.1CmoCh18G011060.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh18G011060.1.exon.1CmoCh18G011060.1.exon.1exon
CmoCh18G011060.1.exon.2CmoCh18G011060.1.exon.2exon
CmoCh18G011060.1.exon.3CmoCh18G011060.1.exon.3exon
CmoCh18G011060.1.exon.4CmoCh18G011060.1.exon.4exon
CmoCh18G011060.1.exon.5CmoCh18G011060.1.exon.5exon
CmoCh18G011060.1.exon.6CmoCh18G011060.1.exon.6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh18G011060.1.CDS.1CmoCh18G011060.1.CDS.1CDS
CmoCh18G011060.1.CDS.2CmoCh18G011060.1.CDS.2CDS
CmoCh18G011060.1.CDS.3CmoCh18G011060.1.CDS.3CDS
CmoCh18G011060.1.CDS.4CmoCh18G011060.1.CDS.4CDS
CmoCh18G011060.1.CDS.5CmoCh18G011060.1.CDS.5CDS
CmoCh18G011060.1.CDS.6CmoCh18G011060.1.CDS.6CDS


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33078FAMILY NOT NAMEDcoord: 147..206
score: 2.7
NoneNo IPR availablePANTHERPTHR33078:SF4SUBFAMILY NOT NAMEDcoord: 147..206
score: 2.7