CmoCh18G011060 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G011060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein Ycf2
Location	Cmo_Chr18 : 11492932 .. 11496525 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTATTTATGGCCCTTTTCTACAGGGAAACCCAAATTCATTGTAAGATAAAAAAATCAATAGTTACAAAAGGCCGATAGGATGAAATACACCTTCATCGATTAGCTTACACGTTGTTCTGAGTTTATAAAAGGAAGGGAAAACGGTGTTCCCTATATAGAAAATTAACATCTCGATAAAATTTCAAGGTCCAGAGCCAAAGACTCCAAAAACAGATTCTCCCAGTGATAGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGGATCTCTTCTCTAACCACTTCATCGTGTAAGCAAACAAATGATCGGAACGAGATCCTCATTCGCCCTCAAGAACAAATTCCAACAGTTAAACGAAATCTGTGAAAGGTGCACCTCCTCCCCCCTCCCCCTCCCCTCGGGGCAGGAGAGAAGGTCCACAAGAGACCAAGCTCAATACGACGTTCTGGAGATCAGAGAAATGAAATTCAACAATGAGAAACAAGTAAACAGAAAGAAAAAACAAATAAAACACCATCATTCATTCAACACATACTCACAAACAAAACAAGCATTACAAAGTAACAACTTCGAAATCGGAGAAAGAACTCACCTGAATTCTATAGATCCTTCACGATCCAACAAATTAAGTAATCAGATTCCCCACCCAAATCGACGCTATCCGTGAGCCGGCGCCGTCAGAGCTTCGCAAACACGAGAATGAGAGGCCTTCGATGAATCAATATCAAATCCAAGAAACAGGCAAGAGCAAAGAATCGTCGGAGCTAAGTGAAGAGAGAAATGAAACCCACACACAAATTCTCTCACAGTTTCCTCAATCTCTATCTCTCTTCGTTTTATTCTCCGTTTTGCCTCTCAGAAATCCGTCCTCCGTGAACGCTCTTTAACTCGAGTGAGAGAAGCCAGGTTAAAACAACTAACCCTGGTTACATGCCGACCCACTCTCTTGCTCTGGCCTTTCAGATTCGAACACTCTGGAAGGAATGGTGAGAGCCGTTGATGATGAGAGATGCTGGAATTAATGACCGTACGATGAAAGGGGATGGTGACGTGGAGATAAGAGATTCGTTAGTGACGTGGCAGGTCACCTCGAATTGTGGGACACCTGGTTTCATCAGCGACCGGGCCGGGCGGGTTTTCTTATTTTGGGTTTGCCCTTTCGAATCTGTAGTTCTCTGTACTACCCAGTTTCCTGCCCCAATCTGACCGTCAATTTTCACACCATTGAATTTACCAAATTGCCCCCATGTACTTTTTTCCTTTTTTTTCTTTTTCTTACCTCAATTAAATAAATATACCCTCCTTGTCATTTCCAAAATATTTGATCTCCTTCACTTTTATTTTGTTTTTATTATTTTATTTTTTTTGTTTGACATTTACATTTTTAAAAAATATCTTAAAATCATATTATCCACTTATACCAAATAAATAACCAATAAAGAAGATATAATAAAAATCACGAACCTCTACCATAGTATGATATTGTTCCCTTTGAGCCTGAGCTCTCATAACTTTGATTATGATTTTTTAAAAAAAAAAACCTCGTACCAATGAAAATAATGTTTCTTACTTATAAACTCCAAGATACCACGAGTAATGGGCATGCATTATGATTTCTCGAACGTTTTGTCTTGATCTGAATTTTGTCGTGCATGGGTATTTTGTGTTACTTTAACTATTTTATATTACTATTATTGTTGTTTTATTGGCCTTTTCATAATTGAGAAAGAGTCGTTTTATTTAAGCCATGCCAGCTGGTTATGAAAATGACGTGTCAATTCTATCATCATCTTCCAATTTGACCGTAAAACGAATTATTAATTTATTTATTGTATTAACTTCTTTTTCTCCCTTAATTCCGAACCGGAATGGGACGGTTCAGCTGAGTCAGAGTCCACGCATGAACGAGAATCCCACGTGGTGTTTCCGCGTAGGATGCTGCCAATTCAAGACACGATAATCTCACTAGTAATTCCAAAATTTTATTTCCTACGTGTAGGCATTATCCTCTCACGTGTCTTTTGATTCTTCCAAACCGCGGCATACACGCTCACAGTTTTCTTCATGACACACAGACACAAAGCTGACTGGATAAATACTTTTTTTCTTAATTTAAAAAGGACTATTTATTATTATTTTATTAAATAATTGTAATAAATTTAATAGAGTACACTCTCGAGTCTGCCCATGGTTTTAGTGTCTACTTTATAAATGTAGACTAGATATATTAAATTCCTATTTATTAGTTTTTTAAATACTAAAAATGATTAATATTTTAAATTACCCAAAATATTTTATTTAAATTTATTTAAGTTAAGTTGAGTTAAAATAAATAAAAAATTTATAAAGTTAATTTTAAAATATAATTTGTGCTTATGTTTTTTTTTTTTATTTAGTTTAGTAATTATTTGTTTATAATTTATTATTTAATAATTTTTTTAAATAATATCTTTTACGACATTAAATCTTACCCATATAGGTAAGAAATCTCAATAAATCTGAGTAACATTGATTTTTTAGGATAAAAACTAAATTATTACCATTTTTAAATATATGGATAAAAATTAAAGTTTTAGAATAAAAATAGTTTTTAATATAATTAAAAGTATTAATATTTGAAGCTTAAATTTTTTTTAGAGACTTTTTTTAGGATGTTACTGGAGATAGAAAAAATAAAATCAAAATTATTATTATTTTTTAAATATTTTATTATTTCAATTTTATCCTCGCAAATTTACATCAACTAAAACCAAATACAATGGGTATATAGGTCATTTTAAGAAATCTATTGAACTTGAAATTGGGCTTTATCGCTACAGGCCGAAAAGTGGAAGGCCCAAGGCCCAAGGCCCATTATTGCAAGCAAAACAATATATCGAAAATATTTAATTTTCTGAATAGTAAATAATTATGAAAAATATATAACTTTTTTCTTATTATTTATTGATAAAAATGACTGTGAATGAATCTATTTGGTACAAGAATTACGAAAATTTTAATACTATAAATTTATTTTTTTAATCAAAATTGAAATTTACTAAACAATATAAAAAAAAATTAAAAAAATATAGTGAACAATTATTTATTTTTTACCAGCAATAAACTCAAAAAAATCAATGAAATATCTTCGTTTATGTCAATAAAAAAAAATTAAAATATTAATTTTTTTTAATAAGATTAGAAATTAAATTTTTATTCATATATTTTAATTTATTAAATATTTGATTAACAGAAAGAAATTTGAATCTGTGTTTGCATTTTTCGATTCTAACTATGGGATTACAGCTATTCTTGTTTTTCAAACATAAATAAGGCACCCGTACAGATGACAGCCATGGAACCAAACCAGAAAAAATGGGGTCACTTGTTATGAACTCATTGAGAATGATTGTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGTTCGGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGGCCGAACCCAGAAATCCCTTAAATATGATACAAAATGGATCTTATTCTATCAGGGTAGTCATGTTCATGTTTGTTCGATAA

mRNA sequence

ATGCATTATTTATGGCCCTTTTCTACAGGGAAACCCAAATTCATTAAATCCGTCCTCCGTGAACGCTCTTTAACTCGAGTGAGAGAAGCCAGGTTAAAACAACTAACCCTGGTTACATGCCGACCCACTCTCTTGCTCTGGCCTTTCAGATTCGAACACTCTGGAAGGAATGGTCACCTCGAATTGTGGGACACCTGGTTTCATCAGCGACCGGGCCGGGCGGGTTTTCTTATTTTGGGTTTGCCCTTTCGAATCTGTAGTTCTCTGTACTACCCAGTTTCCTGCCCCAATCTGACCGATGCTGCCAATTCAAGACACGATAATCTCACTAGTAATTCCAAAATTTTATTTCCTACGTGCCGAAAAGTGGAAGGCCCAAGGCCCAAGGCCCATTATTGCAAGCAAAACAATATATCGAAAATATTTAATTTTCTGAATATTCATGGCCTATTAGAAGTAGAAGGCGTTCGGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGGCCGAACCCAGAAATCCCTTAAATATGATACAAAATGGATCTTATTCTATCAGGGTAGTCATGTTCATGTTTGTTCGATAA

Coding sequence (CDS)

ATGCATTATTTATGGCCCTTTTCTACAGGGAAACCCAAATTCATTAAATCCGTCCTCCGTGAACGCTCTTTAACTCGAGTGAGAGAAGCCAGGTTAAAACAACTAACCCTGGTTACATGCCGACCCACTCTCTTGCTCTGGCCTTTCAGATTCGAACACTCTGGAAGGAATGGTCACCTCGAATTGTGGGACACCTGGTTTCATCAGCGACCGGGCCGGGCGGGTTTTCTTATTTTGGGTTTGCCCTTTCGAATCTGTAGTTCTCTGTACTACCCAGTTTCCTGCCCCAATCTGACCGATGCTGCCAATTCAAGACACGATAATCTCACTAGTAATTCCAAAATTTTATTTCCTACGTGCCGAAAAGTGGAAGGCCCAAGGCCCAAGGCCCATTATTGCAAGCAAAACAATATATCGAAAATATTTAATTTTCTGAATATTCATGGCCTATTAGAAGTAGAAGGCGTTCGGTTGGGATTGGGATCCTCACAAACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACATTGCTTCTTCGGGCCGAACCCAGAAATCCCTTAAATATGATACAAAATGGATCTTATTCTATCAGGGTAGTCATGTTCATGTTTGTTCGATAA

Homology

[Close]

BLAST of CmoCh18G011060 vs. Swiss-Prot
Match: YCF2_SOYBN (Protein Ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-17
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]

BLAST of CmoCh18G011060 vs. Swiss-Prot
Match: YCF2_PHAVU (Protein Ycf2 OS=Phaseolus vulgaris GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-16
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLN IQNGSYSI    F++
Sbjct: 1981 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNRIQNGSYSIVDQRFLY 2038

[Close]

BLAST of CmoCh18G011060 vs. Swiss-Prot
Match: YCF2_PLAOC (Protein Ycf2 OS=Platanus occidentalis GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEGV +G  SS+TEKDCS+FDNDRVTLLLR+EPRNPL+M+QNGS SI    F++
Sbjct: 1994 VHGLLEVEGVLVG--SSRTEKDCSQFDNDRVTLLLRSEPRNPLDMMQNGSCSIVDQRFLY 2051

[Close]

BLAST of CmoCh18G011060 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.4e-16
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG   G  SS TEKDCSRFDNDRVTLLLR EPRNPL+MIQNGS SI   +F++
Sbjct: 1696 VHGLLEVEGALFG--SSWTEKDCSRFDNDRVTLLLRPEPRNPLDMIQNGSSSIVDQIFLY 1753

[Close]

BLAST of CmoCh18G011060 vs. Swiss-Prot
Match: YCF2_LOTJA (Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-16
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FDNDRVTLLLR EP NPLNMIQNGS SI    F++
Sbjct: 2001 VHGLLEVEGALVG--SSRTEKDCSQFDNDRVTLLLRPEPSNPLNMIQNGSCSIVDQRFLY 2058

[Close]

BLAST of CmoCh18G011060 vs. TrEMBL
Match: A0A158UR81_9FABA (Hypothetical chloroplast RF21 OS=Apios americana GN=ycf2 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FDNDRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1447 VHGLLEVEGALVG--SSRTEKDCSQFDNDRVTLLLRSEPRNPLNMIQNGSYSIVDHRFLY 1504

[Close]

BLAST of CmoCh18G011060 vs. TrEMBL
Match: R9ZS63_GLYTO (Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]

BLAST of CmoCh18G011060 vs. TrEMBL
Match: R9ZV93_GLYTO (Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]

BLAST of CmoCh18G011060 vs. TrEMBL
Match: R9ZTQ7_GLYTO (Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]

BLAST of CmoCh18G011060 vs. TrEMBL
Match: R9ZPU3_9FABA (Protein Ycf2 OS=Glycine cyrtoloba GN=ycf2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]

BLAST of CmoCh18G011060 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 77.8 bits (190), Expect = 8.8e-15
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEV+G  +G  SS+TEKDCS+FDNDRVTLL R+EPR+PL M+Q+GS SI    F++
Sbjct: 2002 VHGLLEVQGALVG--SSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLY 2059

[Close]

BLAST of CmoCh18G011060 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 77.8 bits (190), Expect = 8.8e-15
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEV+G  +G  SS+TEKDCS+FDNDRVTLL R+EPR+PL M+Q+GS SI    F++
Sbjct: 2002 VHGLLEVQGALVG--SSRTEKDCSQFDNDRVTLLFRSEPRDPLYMMQDGSCSIVDQRFLY 2059

[Close]

BLAST of CmoCh18G011060 vs. NCBI nr
Match: gi|91214183|ref|YP_538807.1| (Ycf2 [Glycine max])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]

BLAST of CmoCh18G011060 vs. NCBI nr
Match: gi|734345778|gb|KHN10867.1| (Protein ycf2 [Glycine soja])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147 IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
           +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 47  VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 104

[Close]

BLAST of CmoCh18G011060 vs. NCBI nr
Match: gi|526176373|ref|YP_008146161.1| (hypothetical chloroplast RF2 (chloroplast) [Glycine syndetika])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

[Close]

BLAST of CmoCh18G011060 vs. NCBI nr
Match: gi|1012339194|gb|KYP50431.1| (Protein ycf2, partial [Cajanus cajan])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147 IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
           +HGLLEVEG  +G  SS+TEKDCS+FDNDRVTLLLR+EPRNPLNMIQNG YSI    F++
Sbjct: 21  VHGLLEVEGALVG--SSRTEKDCSQFDNDRVTLLLRSEPRNPLNMIQNGFYSIVDQRFLY 78

[Close]

BLAST of CmoCh18G011060 vs. NCBI nr
Match: gi|526176105|ref|YP_008145915.1| (hypothetical chloroplast RF2 (chloroplast) [Glycine canescens])

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 147  IHGLLEVEGVRLGLGSSQTEKDCSRFDNDRVTLLLRAEPRNPLNMIQNGSYSIRVVMFMF 206
            +HGLLEVEG  +G  SS+TEKDCS+FD DRVTLLLR+EPRNPLNMIQNGSYSI    F++
Sbjct: 1990 VHGLLEVEGALVG--SSRTEKDCSQFDKDRVTLLLRSEPRNPLNMIQNGSYSIVDQRFLY 2047

The following BLAST results are available for this feature:

BLAST of CmoCh18G011060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_SOYBN	4.0e-17	73.33	Protein Ycf2 OS=Glycine max GN=ycf2-A PE=3 SV=1	[more]
YCF2_PHAVU	2.0e-16	71.67	Protein Ycf2 OS=Phaseolus vulgaris GN=ycf2-A PE=3 SV=1	[more]
YCF2_PLAOC	2.6e-16	71.67	Protein Ycf2 OS=Platanus occidentalis GN=ycf2-A PE=3 SV=1	[more]
YCF2_CUCSA	3.4e-16	73.33	Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1	[more]
YCF2_LOTJA	7.5e-16	71.67	Protein Ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmoCh18G011060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A158UR81_9FABA	1.2e-15	75.00	Hypothetical chloroplast RF21 OS=Apios americana GN=ycf2 PE=4 SV=1	[more]
R9ZS63_GLYTO	4.4e-15	73.33	Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1	[more]
R9ZV93_GLYTO	4.4e-15	73.33	Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1	[more]
R9ZTQ7_GLYTO	4.4e-15	73.33	Protein Ycf2 OS=Glycine tomentella GN=ycf2 PE=3 SV=1	[more]
R9ZPU3_9FABA	4.4e-15	73.33	Protein Ycf2 OS=Glycine cyrtoloba GN=ycf2 PE=3 SV=1	[more]

BLAST of CmoCh18G011060 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	8.8e-15	63.33	ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	8.8e-15	63.33	ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of CmoCh18G011060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|91214183\|ref\|YP_538807.1\|	6.3e-15	73.33	Ycf2 [Glycine max]	[more]
gi\|734345778\|gb\|KHN10867.1\|	6.3e-15	73.33	Protein ycf2 [Glycine soja]	[more]
gi\|526176373\|ref\|YP_008146161.1\|	6.3e-15	73.33	hypothetical chloroplast RF2 (chloroplast) [Glycine syndetika]	[more]
gi\|1012339194\|gb\|KYP50431.1\|	6.3e-15	73.33	Protein ycf2, partial [Cajanus cajan]	[more]
gi\|526176105\|ref\|YP_008145915.1\|	6.3e-15	73.33	hypothetical chloroplast RF2 (chloroplast) [Glycine canescens]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G011060.1	CmoCh18G011060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 147..206 score: 2.7
None	No IPR available	PANTHER	PTHR33078:SF4	SUBFAMILY NOT NAMED	coord: 147..206 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G011060	Silver-seed gourd	carcmoB0627
CmoCh18G011060	Silver-seed gourd	carcmoB0811
CmoCh18G011060	Silver-seed gourd	carcmoB1135
CmoCh18G011060	Cucumber (Chinese Long) v3	cmocucB0466
CmoCh18G011060	Cucumber (Chinese Long) v3	cmocucB0487
CmoCh18G011060	Watermelon (97103) v2	cmowmbB403
CmoCh18G011060	Watermelon (97103) v2	cmowmbB411
CmoCh18G011060	Watermelon (97103) v2	cmowmbB417
CmoCh18G011060	Wax gourd	cmowgoB0503
CmoCh18G011060	Wax gourd	cmowgoB0535
CmoCh18G011060	Cucurbita moschata (Rifu)	cmocmoB063
CmoCh18G011060	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh18G011060	Cucumber (Gy14) v1	cgycmoB0265
CmoCh18G011060	Cucumber (Gy14) v1	cgycmoB0789
CmoCh18G011060	Cucurbita maxima (Rimu)	cmacmoB088
CmoCh18G011060	Cucurbita maxima (Rimu)	cmacmoB137
CmoCh18G011060	Cucurbita maxima (Rimu)	cmacmoB406
CmoCh18G011060	Cucurbita maxima (Rimu)	cmacmoB706
CmoCh18G011060	Wild cucumber (PI 183967)	cmocpiB391
CmoCh18G011060	Wild cucumber (PI 183967)	cmocpiB411
CmoCh18G011060	Cucumber (Chinese Long) v2	cmocuB406
CmoCh18G011060	Melon (DHL92) v3.5.1	cmomeB344
CmoCh18G011060	Melon (DHL92) v3.5.1	cmomeB361
CmoCh18G011060	Melon (DHL92) v3.5.1	cmomeB367
CmoCh18G011060	Watermelon (Charleston Gray)	cmowcgB358
CmoCh18G011060	Watermelon (Charleston Gray)	cmowcgB364
CmoCh18G011060	Watermelon (97103) v1	cmowmB359
CmoCh18G011060	Watermelon (97103) v1	cmowmB365
CmoCh18G011060	Watermelon (97103) v1	cmowmB396
CmoCh18G011060	Cucurbita pepo (Zucchini)	cmocpeB390
CmoCh18G011060	Cucurbita pepo (Zucchini)	cmocpeB392
CmoCh18G011060	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G011060	Cucurbita pepo (Zucchini)	cmocpeB411
CmoCh18G011060	Bottle gourd (USVL1VR-Ls)	cmolsiB374
CmoCh18G011060	Bottle gourd (USVL1VR-Ls)	cmolsiB364
CmoCh18G011060	Bottle gourd (USVL1VR-Ls)	cmolsiB382
CmoCh18G011060	Cucumber (Gy14) v2	cgybcmoB603
CmoCh18G011060	Melon (DHL92) v3.6.1	cmomedB395
CmoCh18G011060	Melon (DHL92) v3.6.1	cmomedB412
CmoCh18G011060	Melon (DHL92) v3.6.1	cmomedB420