CmoCh18G005110.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G005110.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr18 : 3671281 .. 3671574 (+)
Sequence length294
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATCGCCTTACTCGTGGTGGTGAGTTGGTTGACTGAGAAGGATGCGGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA

mRNA sequence

ATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATCGCCTTACTCGTGGTGGTGAGTTGGTTGACTGAGAAGGATGCGGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA

Coding sequence (CDS)

ATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATCGCCTTACTCGTGGTGGTGAGTTGGTTGACTGAGAAGGATGCGGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA
Homology
[Close]
BLAST of CmoCh18G005110.1 vs. TrEMBL
Match: A0A0A0LW23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-31
Identity = 68/95 (71.58%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 1   MSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMRKHETE 60
           +SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR W S+   V TI +   H+ E
Sbjct: 66  ISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISE---HKAE 125

Query: 61  AEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 96
            E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFV
Sbjct: 126 YEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 157

[Close]
BLAST of CmoCh18G005110.1 vs. NCBI nr
Match: gi|700210872|gb|KGN65968.1| (hypothetical protein Csa_1G554550 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 6.6e-31
Identity = 68/95 (71.58%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 1   MSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMRKHETE 60
           +SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR W S+   V TI +   H+ E
Sbjct: 66  ISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISE---HKAE 125

Query: 61  AEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 96
            E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFV
Sbjct: 126 YEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 157

The following BLAST results are available for this feature:
BLAST of CmoCh18G005110.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh18G005110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW23_CUCSA4.6e-3171.58Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554550 PE=4 SV=1[more]
BLAST of CmoCh18G005110.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh18G005110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210872|gb|KGN65968.1|6.6e-3171.58hypothetical protein Csa_1G554550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh18G005110CmoCh18G005110gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh18G005110.1CmoCh18G005110.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh18G005110.1.exon.1CmoCh18G005110.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh18G005110.1.CDS.1CmoCh18G005110.1.CDS.1CDS