CmoCh18G005110 (gene) Cucurbita moschata (Rifu)

NameCmoCh18G005110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr18 : 3671281 .. 3671574 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATCGCCTTACTCGTGGTGGTGAGTTGGTTGACTGAGAAGGATGCGGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA

mRNA sequence

ATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATCGCCTTACTCGTGGTGGTGAGTTGGTTGACTGAGAAGGATGCGGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA

Coding sequence (CDS)

ATGTCCAGTCCCAAACGGTTGCCTTGTGGTGGTTGGTCTTTACGAGTGGCGCCAATCGCCTTACTCGTGGTGGTGAGTTGGTTGACTGAGAAGGATGCGGAAGGAGTCGCTGCTCGGAACTGGGGGTCTCGGTGCTGTCATGTTCCAACCATCTTGGACATGAGGAAGCATGAGACGGAGGCTGAAGGAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATATTGTTACTGTTCAATATGGCTCAACGGCAGGCGCTCATTCGACATTGCTTGTTTGTAAGTATGTGA
BLAST of CmoCh18G005110 vs. TrEMBL
Match: A0A0A0LW23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-31
Identity = 68/95 (71.58%), Postives = 79/95 (83.16%), Query Frame = 1

Query: 1   MSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMRKHETE 60
           +SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR W S+   V TI +   H+ E
Sbjct: 66  ISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISE---HKAE 125

Query: 61  AEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 96
            E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFV
Sbjct: 126 YEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 157

BLAST of CmoCh18G005110 vs. NCBI nr
Match: gi|700210872|gb|KGN65968.1| (hypothetical protein Csa_1G554550 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 6.6e-31
Identity = 68/95 (71.58%), Postives = 79/95 (83.16%), Query Frame = 1

Query: 1   MSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTILDMRKHETE 60
           +SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR W S+   V TI +   H+ E
Sbjct: 66  ISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISE---HKAE 125

Query: 61  AEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 96
            E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFV
Sbjct: 126 YEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LW23_CUCSA4.6e-3171.58Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700210872|gb|KGN65968.1|6.6e-3171.58hypothetical protein Csa_1G554550 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G005110.1CmoCh18G005110.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G005110Wax gourdcmowgoB0530
CmoCh18G005110Cucurbita moschata (Rifu)cmocmoB170
CmoCh18G005110Cucumber (Gy14) v1cgycmoB0479
CmoCh18G005110Cucurbita maxima (Rimu)cmacmoB223
CmoCh18G005110Cucurbita maxima (Rimu)cmacmoB407
CmoCh18G005110Cucurbita pepo (Zucchini)cmocpeB403
CmoCh18G005110Cucumber (Gy14) v2cgybcmoB083
CmoCh18G005110Melon (DHL92) v3.6.1cmomedB408
CmoCh18G005110Silver-seed gourdcarcmoB0537
CmoCh18G005110Silver-seed gourdcarcmoB0606
CmoCh18G005110Watermelon (97103) v2cmowmbB377