CmoCh18G002140.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G002140.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cycloeucalenol cycloisomerase-like protein
Location	Cmo_Chr18 : 1390507 .. 1391726 (+)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGGTTGCATAGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATGTAATTTCCTATCCTCTCTTGTTCTTACAAAACTATTTTCAAAAACCTTTCTCAAAAGAATTTGTATCATTTTCAATCTTTATTTTTATCGAATAGAAGGAGAAAAACCGATTCTTTATATAGTAATTCGGCCTATTGATACTTTGGACGATCGGAATTTAACGTACAAAGTTGGCTCTTTATTCTATTTTTCCATTTTTCTTCGTGAATTACAAAAACTAGATAAGAGAAGGAAGACAATGATAACCATGAATCATCTTCTATAGTTGTCATTTTCTATTGCCCATAAACTTATCCTTGTACAAAGTTTAGATGACTCTAAAATCCCTCCCTCCTCACAACGGTATGAAAAATCCTCCCTAATAGAGGTATTTTGAAGTCAACCAAAAATCCTCCCTAATAGAGGTATTTTGAAATCGGAGGTTGACTGCAATACATAACAAACCGAATCGAACAATATCTACTAACTGTGAGCTCAAACTGTTACAAATAGTATTAAAGTCAGAGAGCTTAAAACTGTTACAAATAGTATCAGAATATCGAAGACTAGGCGGTGTACCAACAAGGACGTAAGGTCCTTAACGTGATAATAAGACCCTCATAGCTCTATTATAACATTAAGCCACTGGGGCTTGTAAAGCATGCTATTTTAGATTATTAAGTGGTAACATACAGTTCACGGCCATCGTTAATGTGGTGCCTTTCAAGTTCTCTTTCCTATTGTCAACTGATTTTAGCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG

mRNA sequence

ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG

Coding sequence (CDS)

ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG

Homology

[Close]

BLAST of CmoCh18G002140.1 vs. Swiss-Prot
Match: CCI1_ARATH (Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-08
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 1


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SNITLRRLRHS A L   ++    A  I+ALSYFIAYLET+A           
Sbjct: 138 FLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWILALSYFIAYLETIA----------- 197

Query: 89  GDLVISNLPHITRTLKEFVLKVKC--YRFFLTSSHHVGSIHNRIDEKPGD 134
               I+N P+     +  + +V C  Y  +   S     +  R+DEK  D
Sbjct: 198 ----IANFPYYEFVDRSAMYRVGCLFYAIYFIVSF---PMFFRMDEKSTD 229

[Close]

BLAST of CmoCh18G002140.1 vs. TrEMBL
Match: A0A0B0P8U0_GOSAR (Cycloeucalenol cycloisomerase-like protein OS=Gossypium arboreum GN=F383_30280 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

[Close]

BLAST of CmoCh18G002140.1 vs. TrEMBL
Match: A0A0D2QG44_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G059700 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

[Close]

BLAST of CmoCh18G002140.1 vs. TrEMBL
Match: A0A061G5X6_THECC (Cyclopropyl isomerase isoform 1 OS=Theobroma cacao GN=TCM_014611 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 1


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHSI  L K IQ AT    I+ALSYFIAYLETLA           
Sbjct: 182 FLFYHVASNMTLRRLRHSITGLPKKIQLATEAAWILALSYFIAYLETLA----------- 241

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGD 134
               ISN P+      +FV +   Y+    F+         +  RIDEKPGD
Sbjct: 242 ----ISNFPYY-----DFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGD 273

[Close]

BLAST of CmoCh18G002140.1 vs. TrEMBL
Match: A0A061FY22_THECC (Cycloeucalenol cycloisomerase, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_014611 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 53/118 (44.92%), Postives = 64/118 (54.24%), Query Frame = 1


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHSI  L K IQ AT    I+ALSYFIAYLETLA           
Sbjct: 131 FLFYHVASNMTLRRLRHSITGLPKKIQLATEAAWILALSYFIAYLETLA----------- 190

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR---------FFLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +FV +   Y+         FF++    +  +  +RIDEKPGD
Sbjct: 191 ----ISNFPYY-----DFVDRASMYKVGSLFYAIYFFVSFPMFLRLTPFHRIDEKPGD 228

[Close]

BLAST of CmoCh18G002140.1 vs. TrEMBL
Match: A0A0A0LUD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050410 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHS+A L ++IQ  T+   I+ALSYFIAYLETLA           
Sbjct: 146 FLFYHVASNMTLRRLRHSVADLPENIQWFTLVAWILALSYFIAYLETLA----------- 205

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGD 134
               ISN P+      +FV +   Y+    F+         +  RIDEKPGD
Sbjct: 206 ----ISNFPYY-----QFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGD 237

[Close]

BLAST of CmoCh18G002140.1 vs. TAIR10
Match: AT5G50375.2 (AT5G50375.2 cyclopropyl isomerase)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-09
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 1


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SNITLRRLRHS A L   ++    A  I+ALSYFIAYLET+A           
Sbjct: 138 FLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWILALSYFIAYLETIA----------- 197

Query: 89  GDLVISNLPHITRTLKEFVLKVKC--YRFFLTSSHHVGSIHNRIDEKPGD 134
               I+N P+     +  + +V C  Y  +   S     +  R+DEK  D
Sbjct: 198 ----IANFPYYEFVDRSAMYRVGCLFYAIYFIVSF---PMFFRMDEKSTD 229

[Close]

BLAST of CmoCh18G002140.1 vs. NCBI nr
Match: gi|823121737|ref|XP_012468161.1| (PREDICTED: cycloeucalenol cycloisomerase [Gossypium raimondii])

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

[Close]

BLAST of CmoCh18G002140.1 vs. NCBI nr
Match: gi|728843700|gb|KHG23143.1| (Cycloeucalenol cycloisomerase -like protein [Gossypium arboreum])

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

[Close]

BLAST of CmoCh18G002140.1 vs. NCBI nr
Match: gi|747085785|ref|XP_011090368.1| (PREDICTED: cycloeucalenol cycloisomerase [Sesamum indicum])

HSP 1 Score: 72.8 bits (177), Expect = 6.1e-10
Identity = 52/113 (46.02%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHVTSN+TLRR++HSIA L +  Q   RA  I+ALSYFIAYLETLA           
Sbjct: 142 FLFYHVTSNLTLRRIQHSIAHLPEKTQLLFRAAWILALSYFIAYLETLA----------- 201

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGDR 135
               ISN P+      EFV +   Y+    F+         +  RIDEKPGDR
Sbjct: 202 ----ISNFPYY-----EFVDRASMYKVGSLFYAIYFFVSFPMFMRIDEKPGDR 234

[Close]

BLAST of CmoCh18G002140.1 vs. NCBI nr
Match: gi|590670055|ref|XP_007037948.1| (Cyclopropyl isomerase isoform 1 [Theobroma cacao])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 1


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHSI  L K IQ AT    I+ALSYFIAYLETLA           
Sbjct: 182 FLFYHVASNMTLRRLRHSITGLPKKIQLATEAAWILALSYFIAYLETLA----------- 241

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGD 134
               ISN P+      +FV +   Y+    F+         +  RIDEKPGD
Sbjct: 242 ----ISNFPYY-----DFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGD 273

[Close]

BLAST of CmoCh18G002140.1 vs. NCBI nr
Match: gi|659067477|ref|XP_008439629.1| (PREDICTED: cycloeucalenol cycloisomerase [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHS+A L ++IQ  T+   I+ALSYFIAYLETLA           
Sbjct: 146 FLFYHVASNMTLRRLRHSVADLPENIQWVTLVAWILALSYFIAYLETLA----------- 205

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGD 134
               ISN P+      +FV +   Y+    F+         +  RIDEKPGD
Sbjct: 206 ----ISNFPYY-----QFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGD 237

The following BLAST results are available for this feature:

BLAST of CmoCh18G002140.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCI1_ARATH	5.7e-08	40.00	Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1	[more]

BLAST of CmoCh18G002140.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0P8U0_GOSAR	6.5e-11	47.01	Cycloeucalenol cycloisomerase-like protein OS=Gossypium arboreum GN=F383_30280 P...	[more]
A0A0D2QG44_GOSRA	6.5e-11	47.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G059700 PE=4 SV=1	[more]
A0A061G5X6_THECC	1.6e-09	46.43	Cyclopropyl isomerase isoform 1 OS=Theobroma cacao GN=TCM_014611 PE=4 SV=1	[more]
A0A061FY22_THECC	2.7e-09	44.92	Cycloeucalenol cycloisomerase, putative isoform 2 (Fragment) OS=Theobroma cacao ...	[more]
A0A0A0LUD1_CUCSA	3.6e-09	44.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050410 PE=4 SV=1	[more]

BLAST of CmoCh18G002140.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50375.2	3.2e-09	40.00	cyclopropyl isomerase	[more]

BLAST of CmoCh18G002140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823121737\|ref\|XP_012468161.1\|	9.4e-11	47.01	PREDICTED: cycloeucalenol cycloisomerase [Gossypium raimondii]	[more]
gi\|728843700\|gb\|KHG23143.1\|	9.4e-11	47.01	Cycloeucalenol cycloisomerase -like protein [Gossypium arboreum]	[more]
gi\|747085785\|ref\|XP_011090368.1\|	6.1e-10	46.02	PREDICTED: cycloeucalenol cycloisomerase [Sesamum indicum]	[more]
gi\|590670055\|ref\|XP_007037948.1\|	2.3e-09	46.43	Cyclopropyl isomerase isoform 1 [Theobroma cacao]	[more]
gi\|659067477\|ref\|XP_008439629.1\|	3.0e-09	44.64	PREDICTED: cycloeucalenol cycloisomerase [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR020532	Cycloeucalenol_cycloisomerase

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh18G002140	CmoCh18G002140	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh18G002140.1	CmoCh18G002140.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G002140.1.exon.1	CmoCh18G002140.1.exon.1	exon
CmoCh18G002140.1.exon.2	CmoCh18G002140.1.exon.2	exon
CmoCh18G002140.1.exon.3	CmoCh18G002140.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G002140.1.CDS.1	CmoCh18G002140.1.CDS.1	CDS
CmoCh18G002140.1.CDS.2	CmoCh18G002140.1.CDS.2	CDS
CmoCh18G002140.1.CDS.3	CmoCh18G002140.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020532	Cycloeucalenol cycloisomerase	PRODOM	PD317471		coord: 29..134 score: 6.0