CmoCh18G002140 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGGTTGCATAGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATGTAATTTCCTATCCTCTCTTGTTCTTACAAAACTATTTTCAAAAACCTTTCTCAAAAGAATTTGTATCATTTTCAATCTTTATTTTTATCGAATAGAAGGAGAAAAACCGATTCTTTATATAGTAATTCGGCCTATTGATACTTTGGACGATCGGAATTTAACGTACAAAGTTGGCTCTTTATTCTATTTTTCCATTTTTCTTCGTGAATTACAAAAACTAGATAAGAGAAGGAAGACAATGATAACCATGAATCATCTTCTATAGTTGTCATTTTCTATTGCCCATAAACTTATCCTTGTACAAAGTTTAGATGACTCTAAAATCCCTCCCTCCTCACAACGGTATGAAAAATCCTCCCTAATAGAGGTATTTTGAAGTCAACCAAAAATCCTCCCTAATAGAGGTATTTTGAAATCGGAGGTTGACTGCAATACATAACAAACCGAATCGAACAATATCTACTAACTGTGAGCTCAAACTGTTACAAATAGTATTAAAGTCAGAGAGCTTAAAACTGTTACAAATAGTATCAGAATATCGAAGACTAGGCGGTGTACCAACAAGGACGTAAGGTCCTTAACGTGATAATAAGACCCTCATAGCTCTATTATAACATTAAGCCACTGGGGCTTGTAAAGCATGCTATTTTAGATTATTAAGTGGTAACATACAGTTCACGGCCATCGTTAATGTGGTGCCTTTCAAGTTCTCTTTCCTATTGTCAACTGATTTTAGCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG
BLAST of CmoCh18G002140 vs. Swiss-Prot
Match: CCI1_ARATH (Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 5.7e-08 Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 1
BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A0B0P8U0_GOSAR (Cycloeucalenol cycloisomerase-like protein OS=Gossypium arboreum GN=F383_30280 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11 Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1
BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A0D2QG44_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G059700 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11 Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1
BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A061G5X6_THECC (Cyclopropyl isomerase isoform 1 OS=Theobroma cacao GN=TCM_014611 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09 Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 1
BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A061FY22_THECC (Cycloeucalenol cycloisomerase, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_014611 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09 Identity = 53/118 (44.92%), Postives = 64/118 (54.24%), Query Frame = 1
BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A0A0LUD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050410 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09 Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 1
BLAST of CmoCh18G002140 vs. TAIR10
Match: AT5G50375.2 (AT5G50375.2 cyclopropyl isomerase) HSP 1 Score: 58.9 bits (141), Expect = 3.2e-09 Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 1
BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|823121737|ref|XP_012468161.1| (PREDICTED: cycloeucalenol cycloisomerase [Gossypium raimondii]) HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11 Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1
BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|728843700|gb|KHG23143.1| (Cycloeucalenol cycloisomerase -like protein [Gossypium arboreum]) HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11 Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1
BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|747085785|ref|XP_011090368.1| (PREDICTED: cycloeucalenol cycloisomerase [Sesamum indicum]) HSP 1 Score: 72.8 bits (177), Expect = 6.1e-10 Identity = 52/113 (46.02%), Postives = 62/113 (54.87%), Query Frame = 1
BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|590670055|ref|XP_007037948.1| (Cyclopropyl isomerase isoform 1 [Theobroma cacao]) HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09 Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 1
BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|659067477|ref|XP_008439629.1| (PREDICTED: cycloeucalenol cycloisomerase [Cucumis melo]) HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09 Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |