CmoCh18G002140 (gene) Cucurbita moschata (Rifu)

NameCmoCh18G002140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCycloeucalenol cycloisomerase-like protein
LocationCmo_Chr18 : 1390507 .. 1391726 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGGTTGCATAGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATGTAATTTCCTATCCTCTCTTGTTCTTACAAAACTATTTTCAAAAACCTTTCTCAAAAGAATTTGTATCATTTTCAATCTTTATTTTTATCGAATAGAAGGAGAAAAACCGATTCTTTATATAGTAATTCGGCCTATTGATACTTTGGACGATCGGAATTTAACGTACAAAGTTGGCTCTTTATTCTATTTTTCCATTTTTCTTCGTGAATTACAAAAACTAGATAAGAGAAGGAAGACAATGATAACCATGAATCATCTTCTATAGTTGTCATTTTCTATTGCCCATAAACTTATCCTTGTACAAAGTTTAGATGACTCTAAAATCCCTCCCTCCTCACAACGGTATGAAAAATCCTCCCTAATAGAGGTATTTTGAAGTCAACCAAAAATCCTCCCTAATAGAGGTATTTTGAAATCGGAGGTTGACTGCAATACATAACAAACCGAATCGAACAATATCTACTAACTGTGAGCTCAAACTGTTACAAATAGTATTAAAGTCAGAGAGCTTAAAACTGTTACAAATAGTATCAGAATATCGAAGACTAGGCGGTGTACCAACAAGGACGTAAGGTCCTTAACGTGATAATAAGACCCTCATAGCTCTATTATAACATTAAGCCACTGGGGCTTGTAAAGCATGCTATTTTAGATTATTAAGTGGTAACATACAGTTCACGGCCATCGTTAATGTGGTGCCTTTCAAGTTCTCTTTCCTATTGTCAACTGATTTTAGCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG

mRNA sequence

ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG

Coding sequence (CDS)

ATGAAGGATGAACCATGTAAGAATTGGAGAAAATTGAAAGGAAAAGGAAAAGAAAATTGCAAGGTTTCTTCTTACGCACGTCTGTTTCTGTTGTATCACGTCACATCCAACATAACTCTTAGAAGACTCCGACATTCTATTGCCAGCTTGTCGAAGCATATTCAACGGGCTACCATGATTGTGGCTCTCTCATACTTCATTGCATACTTGGAGACTCTGGCCTTTGGGTTACCATGGTTCCATGGTTGCATACTGGGAGACTTAGTCATTTCTAATCTTCCACACATTACTCGGACTCTGAAAGAGTTCGTTTTAAAGGTTAAATGCTACCGGTTCTTTCTAACATCCTCCCATCATGTTGGTTCAATACACAACAGGATTGATGAGAAGCCTGGTGATCGATCTCTGGGACTTGCAAAGAGTGGCCGAACACTATTTCTTATGGTTGCTATCTTCCATTGGATGCAATGTTAG
BLAST of CmoCh18G002140 vs. Swiss-Prot
Match: CCI1_ARATH (Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-08
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 1

Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SNITLRRLRHS A L   ++    A  I+ALSYFIAYLET+A           
Sbjct: 138 FLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWILALSYFIAYLETIA----------- 197

Query: 89  GDLVISNLPHITRTLKEFVLKVKC--YRFFLTSSHHVGSIHNRIDEKPGD 134
               I+N P+     +  + +V C  Y  +   S     +  R+DEK  D
Sbjct: 198 ----IANFPYYEFVDRSAMYRVGCLFYAIYFIVSF---PMFFRMDEKSTD 229

BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A0B0P8U0_GOSAR (Cycloeucalenol cycloisomerase-like protein OS=Gossypium arboreum GN=F383_30280 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A0D2QG44_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G059700 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-11
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A061G5X6_THECC (Cyclopropyl isomerase isoform 1 OS=Theobroma cacao GN=TCM_014611 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 1

Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHSI  L K IQ AT    I+ALSYFIAYLETLA           
Sbjct: 182 FLFYHVASNMTLRRLRHSITGLPKKIQLATEAAWILALSYFIAYLETLA----------- 241

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGD 134
               ISN P+      +FV +   Y+    F+         +  RIDEKPGD
Sbjct: 242 ----ISNFPYY-----DFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGD 273

BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A061FY22_THECC (Cycloeucalenol cycloisomerase, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_014611 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 53/118 (44.92%), Postives = 64/118 (54.24%), Query Frame = 1

Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHSI  L K IQ AT    I+ALSYFIAYLETLA           
Sbjct: 131 FLFYHVASNMTLRRLRHSITGLPKKIQLATEAAWILALSYFIAYLETLA----------- 190

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR---------FFLTSSHHVG-SIHNRIDEKPGD 134
               ISN P+      +FV +   Y+         FF++    +  +  +RIDEKPGD
Sbjct: 191 ----ISNFPYY-----DFVDRASMYKVGSLFYAIYFFVSFPMFLRLTPFHRIDEKPGD 228

BLAST of CmoCh18G002140 vs. TrEMBL
Match: A0A0A0LUD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050410 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 1

Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHS+A L ++IQ  T+   I+ALSYFIAYLETLA           
Sbjct: 146 FLFYHVASNMTLRRLRHSVADLPENIQWFTLVAWILALSYFIAYLETLA----------- 205

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGD 134
               ISN P+      +FV +   Y+    F+         +  RIDEKPGD
Sbjct: 206 ----ISNFPYY-----QFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGD 237

BLAST of CmoCh18G002140 vs. TAIR10
Match: AT5G50375.2 (AT5G50375.2 cyclopropyl isomerase)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-09
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 1

Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SNITLRRLRHS A L   ++    A  I+ALSYFIAYLET+A           
Sbjct: 138 FLFYHVASNITLRRLRHSTADLPDSLKWCFEAAWILALSYFIAYLETIA----------- 197

Query: 89  GDLVISNLPHITRTLKEFVLKVKC--YRFFLTSSHHVGSIHNRIDEKPGD 134
               I+N P+     +  + +V C  Y  +   S     +  R+DEK  D
Sbjct: 198 ----IANFPYYEFVDRSAMYRVGCLFYAIYFIVSF---PMFFRMDEKSTD 229

BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|823121737|ref|XP_012468161.1| (PREDICTED: cycloeucalenol cycloisomerase [Gossypium raimondii])

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|728843700|gb|KHG23143.1| (Cycloeucalenol cycloisomerase -like protein [Gossypium arboreum])

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1

Query: 28  LFLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCI 87
           +FL YHVTSN+TLRRLRHSIASL ++IQ AT    I+ALSYFIAYLETLA          
Sbjct: 139 VFLFYHVTSNMTLRRLRHSIASLPENIQLATEVAWILALSYFIAYLETLA---------- 198

Query: 88  LGDLVISNLPHITRTLKEFVLKVKCYR--------FFLTSSHHVGSIHNRIDEKPGD 134
                ISN P+      +FV +   Y+        +F+ S      +  RIDEKPGD
Sbjct: 199 -----ISNFPYY-----DFVDRASMYKVGSLFYAIYFIVSF----PMFLRIDEKPGD 231

BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|747085785|ref|XP_011090368.1| (PREDICTED: cycloeucalenol cycloisomerase [Sesamum indicum])

HSP 1 Score: 72.8 bits (177), Expect = 6.1e-10
Identity = 52/113 (46.02%), Postives = 62/113 (54.87%), Query Frame = 1

Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQ---RATMIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHVTSN+TLRR++HSIA L +  Q   RA  I+ALSYFIAYLETLA           
Sbjct: 142 FLFYHVTSNLTLRRIQHSIAHLPEKTQLLFRAAWILALSYFIAYLETLA----------- 201

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGDR 135
               ISN P+      EFV +   Y+    F+         +  RIDEKPGDR
Sbjct: 202 ----ISNFPYY-----EFVDRASMYKVGSLFYAIYFFVSFPMFMRIDEKPGDR 234

BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|590670055|ref|XP_007037948.1| (Cyclopropyl isomerase isoform 1 [Theobroma cacao])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 1

Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRAT---MIVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHSI  L K IQ AT    I+ALSYFIAYLETLA           
Sbjct: 182 FLFYHVASNMTLRRLRHSITGLPKKIQLATEAAWILALSYFIAYLETLA----------- 241

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGD 134
               ISN P+      +FV +   Y+    F+         +  RIDEKPGD
Sbjct: 242 ----ISNFPYY-----DFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGD 273

BLAST of CmoCh18G002140 vs. NCBI nr
Match: gi|659067477|ref|XP_008439629.1| (PREDICTED: cycloeucalenol cycloisomerase [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = 1

Query: 29  FLLYHVTSNITLRRLRHSIASLSKHIQRATM---IVALSYFIAYLETLAFGLPWFHGCIL 88
           FL YHV SN+TLRRLRHS+A L ++IQ  T+   I+ALSYFIAYLETLA           
Sbjct: 146 FLFYHVASNMTLRRLRHSVADLPENIQWVTLVAWILALSYFIAYLETLA----------- 205

Query: 89  GDLVISNLPHITRTLKEFVLKVKCYR----FFLTSSHHVGSIHNRIDEKPGD 134
               ISN P+      +FV +   Y+    F+         +  RIDEKPGD
Sbjct: 206 ----ISNFPYY-----QFVDRASMYKVGSLFYAIYFFVSFPMFLRIDEKPGD 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CCI1_ARATH5.7e-0840.00Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0B0P8U0_GOSAR6.5e-1147.01Cycloeucalenol cycloisomerase-like protein OS=Gossypium arboreum GN=F383_30280 P... [more]
A0A0D2QG44_GOSRA6.5e-1147.01Uncharacterized protein OS=Gossypium raimondii GN=B456_001G059700 PE=4 SV=1[more]
A0A061G5X6_THECC1.6e-0946.43Cyclopropyl isomerase isoform 1 OS=Theobroma cacao GN=TCM_014611 PE=4 SV=1[more]
A0A061FY22_THECC2.7e-0944.92Cycloeucalenol cycloisomerase, putative isoform 2 (Fragment) OS=Theobroma cacao ... [more]
A0A0A0LUD1_CUCSA3.6e-0944.64Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050410 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G50375.23.2e-0940.00 cyclopropyl isomerase[more]
Match NameE-valueIdentityDescription
gi|823121737|ref|XP_012468161.1|9.4e-1147.01PREDICTED: cycloeucalenol cycloisomerase [Gossypium raimondii][more]
gi|728843700|gb|KHG23143.1|9.4e-1147.01Cycloeucalenol cycloisomerase -like protein [Gossypium arboreum][more]
gi|747085785|ref|XP_011090368.1|6.1e-1046.02PREDICTED: cycloeucalenol cycloisomerase [Sesamum indicum][more]
gi|590670055|ref|XP_007037948.1|2.3e-0946.43Cyclopropyl isomerase isoform 1 [Theobroma cacao][more]
gi|659067477|ref|XP_008439629.1|3.0e-0944.64PREDICTED: cycloeucalenol cycloisomerase [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020532Cycloeucalenol_cycloisomerase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G002140.1CmoCh18G002140.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020532Cycloeucalenol cycloisomerasePRODOMPD317471coord: 29..134
score: 6.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G002140Wild cucumber (PI 183967)cmocpiB383
CmoCh18G002140Wild cucumber (PI 183967)cmocpiB396
CmoCh18G002140Cucumber (Chinese Long) v2cmocuB380
CmoCh18G002140Cucumber (Chinese Long) v2cmocuB393
CmoCh18G002140Melon (DHL92) v3.5.1cmomeB356
CmoCh18G002140Melon (DHL92) v3.5.1cmomeB363
CmoCh18G002140Watermelon (Charleston Gray)cmowcgB350
CmoCh18G002140Watermelon (Charleston Gray)cmowcgB366
CmoCh18G002140Watermelon (97103) v1cmowmB360
CmoCh18G002140Watermelon (97103) v1cmowmB398
CmoCh18G002140Cucurbita pepo (Zucchini)cmocpeB389
CmoCh18G002140Cucurbita pepo (Zucchini)cmocpeB377
CmoCh18G002140Cucurbita pepo (Zucchini)cmocpeB405
CmoCh18G002140Cucurbita pepo (Zucchini)cmocpeB410
CmoCh18G002140Bottle gourd (USVL1VR-Ls)cmolsiB356
CmoCh18G002140Bottle gourd (USVL1VR-Ls)cmolsiB376
CmoCh18G002140Cucumber (Gy14) v2cgybcmoB082
CmoCh18G002140Cucumber (Gy14) v2cgybcmoB097
CmoCh18G002140Melon (DHL92) v3.6.1cmomedB408
CmoCh18G002140Melon (DHL92) v3.6.1cmomedB416
CmoCh18G002140Silver-seed gourdcarcmoB0500
CmoCh18G002140Silver-seed gourdcarcmoB0673
CmoCh18G002140Silver-seed gourdcarcmoB1350
CmoCh18G002140Cucumber (Chinese Long) v3cmocucB0457
CmoCh18G002140Cucumber (Chinese Long) v3cmocucB0470
CmoCh18G002140Watermelon (97103) v2cmowmbB394
CmoCh18G002140Watermelon (97103) v2cmowmbB413
CmoCh18G002140Wax gourdcmowgoB0518
CmoCh18G002140Cucurbita moschata (Rifu)cmocmoB065
CmoCh18G002140Cucurbita moschata (Rifu)cmocmoB101
CmoCh18G002140Cucurbita moschata (Rifu)cmocmoB166
CmoCh18G002140Cucumber (Gy14) v1cgycmoB0435
CmoCh18G002140Cucumber (Gy14) v1cgycmoB1082
CmoCh18G002140Cucurbita maxima (Rimu)cmacmoB219
CmoCh18G002140Cucurbita maxima (Rimu)cmacmoB409