CmoCh17G013820.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.TATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTAAGTAACCCTTATTCACTATTATGTTTTATACCGTTTGGATAATTATTGAACAATAGAGTTGCAACAGGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTAGGAGAAGCACACGAACGACTTAAGGTTTTGTATCATGCTTCCACTCCATTTAACTCATTTTCCTATTAACTTTTCCATCTGCTGCAATAATATACCACGGCATGGTTTTTGAGTTTGTTTGCCCTCCTTAATCGAAAGGATAGATTTTGCTTAGAAGAGACAAAAAAAAAAAAAAAAGGGCGGGTGTAGTGTGGTGGGGAGAAGCCATCCTAAATGAGTTTTCTAACAATGGTGCTAACTGAAAAATAATCATAAAAATTAAGGGAGCATTTAACTCGCTTGTTATATTTATGTAAAATTGAGCCAAATGTTTGATATGTGAGTCAGCTAACTATCGCACACACGCACATACCCTTCAACCCTCCACTACCTATGCGTATGGGTGGAATATGCTGTAATGCCTACACTTGTTAGTGTTTTTAGCATTAAAATTTTGAAAACTTTGCATGCAAACTGCAAAATATAAGATCTGGCAATCATTGAAATAAGTAGAGTAAACGAAATGATGGCCAGGACTGCATGTCTGCATGGAACATACTATGGTAACATAGTTTTGATTCCAGGACTAATGAAACGCTGCAATGGCGATGCCCAAGAAATTGAGCGCTAGAAAATAAACTTTAAGTTGTAATTTCAAGCTGGTTAGAGTTGTCGTATGGGGAAAATATTATAAGCCTTGGATGTGGTTAGTTCAACATCAACTTTACTGGATTTCATGCTATAGGCAACTAAAACTTATTCAATGGCTTATGTGATATAAATTTTCCATCACCTCGAGTGCTATACTACCCAACCCACTGATCTGTCTGCTTTAGATCTTTTGAGATCAACAAAGTTTTCTTACTGATTGGTCTGGTCGTGATTATTCTGCACGGTTAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAG TATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTAGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAG TATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTAGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAG
BLAST of CmoCh17G013820.1 vs. Swiss-Prot
Match: CMTA4_ARATH (Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 5.7e-47 Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. Swiss-Prot
Match: CMTA2_ARATH (Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 2.0e-39 Identity = 69/109 (63.30%), Postives = 89/109 (81.65%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. Swiss-Prot
Match: CMTA1_ARATH (Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE=2 SV=2) HSP 1 Score: 160.6 bits (405), Expect = 9.7e-39 Identity = 68/109 (62.39%), Postives = 89/109 (81.65%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. Swiss-Prot
Match: CMTA3_ARATH (Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 2.2e-38 Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. Swiss-Prot
Match: CMTA5_ARATH (Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2) HSP 1 Score: 128.6 bits (322), Expect = 4.1e-29 Identity = 54/109 (49.54%), Postives = 79/109 (72.48%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TrEMBL
Match: A0A0A0KCA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095310 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 2.2e-58 Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TrEMBL
Match: A0A0L9TLU4_PHAAN (Uncharacterized protein (Fragment) OS=Phaseolus angularis GN=LR48_Vigan01g107000 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 2.0e-51 Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TrEMBL
Match: A0A0S3R1D4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G205600 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 2.0e-51 Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TrEMBL
Match: K7KQB0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G148300 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 4.5e-51 Identity = 92/109 (84.40%), Postives = 102/109 (93.58%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TrEMBL
Match: A0A0R0K5M7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G148300 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 4.5e-51 Identity = 92/109 (84.40%), Postives = 102/109 (93.58%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TAIR10
Match: AT1G67310.1 (AT1G67310.1 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains) HSP 1 Score: 188.0 bits (476), Expect = 3.2e-48 Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TAIR10
Match: AT5G64220.1 (AT5G64220.1 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains) HSP 1 Score: 162.9 bits (411), Expect = 1.1e-40 Identity = 69/109 (63.30%), Postives = 89/109 (81.65%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TAIR10
Match: AT5G09410.3 (AT5G09410.3 ethylene induced calmodulin binding protein) HSP 1 Score: 160.6 bits (405), Expect = 5.5e-40 Identity = 68/109 (62.39%), Postives = 89/109 (81.65%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TAIR10
Match: AT2G22300.1 (AT2G22300.1 signal responsive 1) HSP 1 Score: 159.5 bits (402), Expect = 1.2e-39 Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. TAIR10
Match: AT3G16940.1 (AT3G16940.1 calmodulin binding;transcription regulators) HSP 1 Score: 129.4 bits (324), Expect = 1.3e-30 Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. NCBI nr
Match: gi|449445760|ref|XP_004140640.1| (PREDICTED: calmodulin-binding transcription activator 4 [Cucumis sativus]) HSP 1 Score: 232.6 bits (592), Expect = 3.2e-58 Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. NCBI nr
Match: gi|659119787|ref|XP_008459844.1| (PREDICTED: calmodulin-binding transcription activator 4 [Cucumis melo]) HSP 1 Score: 231.1 bits (588), Expect = 9.3e-58 Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. NCBI nr
Match: gi|965657974|dbj|BAT74393.1| (hypothetical protein VIGAN_01205600 [Vigna angularis var. angularis]) HSP 1 Score: 209.5 bits (532), Expect = 2.9e-51 Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. NCBI nr
Match: gi|920687532|gb|KOM31515.1| (hypothetical protein LR48_Vigan01g107000, partial [Vigna angularis]) HSP 1 Score: 209.5 bits (532), Expect = 2.9e-51 Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 1
BLAST of CmoCh17G013820.1 vs. NCBI nr
Match: gi|571455577|ref|XP_006580123.1| (PREDICTED: calmodulin-binding transcription activator 4 isoform X3 [Glycine max]) HSP 1 Score: 208.4 bits (529), Expect = 6.5e-51 Identity = 92/109 (84.40%), Postives = 102/109 (93.58%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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