CmoCh17G012810.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G012810.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionActin binding Calponin (CH) domain-containing protein isoform 1
LocationCmo_Chr17 : 10069113 .. 10069726 (+)
Sequence length390
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAACATAGACGAGGAGAAAAAGATGAACGCAACCTACATCATTAGCATTGCAAGGAAGCTTGGATGTTCCATATTTTTGCTTCCTGAAGACATCACTGAGGTACTTATCTGAACTTCAGCTCTATCTTTCTTCCCCCTTTATCTTATTGACTGTTACATTTTTAAATTGTTAAAGAATGAATTGATAGGATAAAATTCAAAAGATCTAACAAAATGTTGACAGATTAATATTTAGATAAACCACTCATATCCAGAAATTCTGCAAAGATGGCTTCCCATTGAAATCCATAAAAATAGGAAATTCGAAAAAATAGTTAAGAGAAAATTTATCAAGTTTTGGGTGTTCTAATTTTTTATAGAGACTCGCTCCAAAGCTCTTGTAGCTAAACACATGTGCCTTAGAGGGAACATGTAGGCAAGAGTGTGAACATGAACTTGTAGTTGTGCTTGAGTTAGGGTTATTGTGATGAGCATGATGTGCGAGCAAGGATGCTGGGGCGTTGATGTGGCGTGCACAAGGTGGGAGAGGCTTGAGGGCCAGCAGGGAATGGTTTTAGAAGTTTAATTATGTAGTTTTATGGTGTGGTCCAAAACAAACCTGGCTCGTAG

mRNA sequence

ATGACCAACATAGACGAGGAGAAAAAGATGAACGCAACCTACATCATTAGCATTGCAAGGAAGCTTGGATGTTCCATATTTTTGCTTCCTGAAGACATCACTGAGATAAACCACTCATATCCAGAAATTCTGCAAAGATGGCTTCCCATTGAAATCCATAAAAATAGGAAATTCGAAAAAATAGTTAAGAGAAAATTTATCAAGTTTTGGACTCGCTCCAAAGCTCTTGTAGCTAAACACATGTGCCTTAGAGGGAACATGGTTATTGTGATGAGCATGATGTGCGAGCAAGGATGCTGGGGCGTTGATGTGGCGTGCACAAGGTGGGAGAGGCTTGAGGGCCAGCAGGGAATGTTTTATGGTGTGGTCCAAAACAAACCTGGCTCGTAG

Coding sequence (CDS)

ATGACCAACATAGACGAGGAGAAAAAGATGAACGCAACCTACATCATTAGCATTGCAAGGAAGCTTGGATGTTCCATATTTTTGCTTCCTGAAGACATCACTGAGATAAACCACTCATATCCAGAAATTCTGCAAAGATGGCTTCCCATTGAAATCCATAAAAATAGGAAATTCGAAAAAATAGTTAAGAGAAAATTTATCAAGTTTTGGACTCGCTCCAAAGCTCTTGTAGCTAAACACATGTGCCTTAGAGGGAACATGGTTATTGTGATGAGCATGATGTGCGAGCAAGGATGCTGGGGCGTTGATGTGGCGTGCACAAGGTGGGAGAGGCTTGAGGGCCAGCAGGGAATGTTTTATGGTGTGGTCCAAAACAAACCTGGCTCGTAG
Homology
[Close]
BLAST of CmoCh17G012810.1 vs. Swiss-Prot
Match: FIMB2_ARATH (Fimbrin-2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATY+ISIARKLGCSIFLLPEDI E+N
Sbjct: 575 DEEKKMNATYVISIARKLGCSIFLLPEDIIEVN 607

[Close]
BLAST of CmoCh17G012810.1 vs. Swiss-Prot
Match: FIMB5_ARATH (Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           +E+KK+NATYIIS+ARKLGCSIFLLPEDI E+N     IL
Sbjct: 573 EEDKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMMLIL 612

[Close]
BLAST of CmoCh17G012810.1 vs. Swiss-Prot
Match: FIMB3_ARATH (Fimbrin-3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           D+EK++NATYI+S+ARKLGCS+FLLPEDI E+N     IL
Sbjct: 574 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 613

[Close]
BLAST of CmoCh17G012810.1 vs. Swiss-Prot
Match: FIMB1_ARATH (Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           D+EK++NATYI+S+ARKLGCS+FLLPEDI E+N     IL
Sbjct: 573 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 612

[Close]
BLAST of CmoCh17G012810.1 vs. Swiss-Prot
Match: FIMB4_ARATH (Fimbrin-4 OS=Arabidopsis thaliana GN=FIM4 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-09
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 

Query: 6   EEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           EEK +NATYIIS+ARKLGCSIFLLPEDI E+N     IL
Sbjct: 570 EEKNLNATYIISVARKLGCSIFLLPEDILEVNQRMMLIL 608

[Close]
BLAST of CmoCh17G012810.1 vs. TrEMBL
Match: A0A059A3R8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02088 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810.1 vs. TrEMBL
Match: A0A067LA47_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15112 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810.1 vs. TrEMBL
Match: B9SMN8_RICCO (Fimbrin, putative OS=Ricinus communis GN=RCOM_1626860 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810.1 vs. TrEMBL
Match: V4KYD4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003785mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATY+ISIARKLGCSIFLLPEDITE+N
Sbjct: 543 DEEKKMNATYVISIARKLGCSIFLLPEDITEVN 575

[Close]
BLAST of CmoCh17G012810.1 vs. TrEMBL
Match: V4K4J3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003785mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATY+ISIARKLGCSIFLLPEDITE+N
Sbjct: 575 DEEKKMNATYVISIARKLGCSIFLLPEDITEVN 607

[Close]
BLAST of CmoCh17G012810.1 vs. TAIR10
Match: AT5G48460.1 (AT5G48460.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATY+ISIARKLGCSIFLLPEDI E+N
Sbjct: 575 DEEKKMNATYVISIARKLGCSIFLLPEDIIEVN 607

[Close]
BLAST of CmoCh17G012810.1 vs. TAIR10
Match: AT5G35700.1 (AT5G35700.1 fimbrin-like protein 2)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           +E+KK+NATYIIS+ARKLGCSIFLLPEDI E+N     IL
Sbjct: 573 EEDKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMMLIL 612

[Close]
BLAST of CmoCh17G012810.1 vs. TAIR10
Match: AT4G26700.1 (AT4G26700.1 fimbrin 1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           D+EK++NATYI+S+ARKLGCS+FLLPEDI E+N     IL
Sbjct: 573 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 612

[Close]
BLAST of CmoCh17G012810.1 vs. TAIR10
Match: AT5G55400.1 (AT5G55400.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           D+EK++NATYI+S+ARKLGCS+FLLPEDI E+N     IL
Sbjct: 574 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 613

[Close]
BLAST of CmoCh17G012810.1 vs. TAIR10
Match: AT2G04750.1 (AT2G04750.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-10
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 

Query: 6   EEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           EEK +NATYIIS+ARKLGCSIFLLPEDI E+N     IL
Sbjct: 570 EEKNLNATYIISVARKLGCSIFLLPEDILEVNQRMMLIL 608

[Close]
BLAST of CmoCh17G012810.1 vs. NCBI nr
Match: gi|720087119|ref|XP_010244055.1| (PREDICTED: LOW QUALITY PROTEIN: fimbrin-5 [Nelumbo nucifera])

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 

Query: 4   IDEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           IDEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 IDEEKKMNATYIISIARKLGCSIFLLPEDITEVN 607

[Close]
BLAST of CmoCh17G012810.1 vs. NCBI nr
Match: gi|802546443|ref|XP_012084895.1| (PREDICTED: fimbrin-2 [Jatropha curcas])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810.1 vs. NCBI nr
Match: gi|470107606|ref|XP_004290135.1| (PREDICTED: fimbrin-2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 576 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 608

[Close]
BLAST of CmoCh17G012810.1 vs. NCBI nr
Match: gi|255572648|ref|XP_002527257.1| (PREDICTED: fimbrin-2 [Ricinus communis])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810.1 vs. NCBI nr
Match: gi|702494499|ref|XP_010036748.1| (PREDICTED: fimbrin-like protein 2 [Eucalyptus grandis])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

The following BLAST results are available for this feature:
BLAST of CmoCh17G012810.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FIMB2_ARATH2.2e-1090.91Fimbrin-2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1[more]
FIMB5_ARATH1.9e-0972.50Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1[more]
FIMB3_ARATH2.5e-0967.50Fimbrin-3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1[more]
FIMB1_ARATH2.5e-0967.50Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2[more]
FIMB4_ARATH7.2e-0974.36Fimbrin-4 OS=Arabidopsis thaliana GN=FIM4 PE=3 SV=1[more]
BLAST of CmoCh17G012810.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059A3R8_EUCGR3.8e-0996.97Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02088 PE=4 SV=1[more]
A0A067LA47_JATCU3.8e-0996.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15112 PE=4 SV=1[more]
B9SMN8_RICCO3.8e-0996.97Fimbrin, putative OS=Ricinus communis GN=RCOM_1626860 PE=4 SV=1[more]
V4KYD4_EUTSA5.0e-0993.94Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003785mg PE=4 SV=1[more]
V4K4J3_EUTSA5.0e-0993.94Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003785mg PE=4 SV=1[more]
BLAST of CmoCh17G012810.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48460.11.3e-1190.91 Actin binding Calponin homology (CH) domain-containing protein[more]
AT5G35700.11.1e-1072.50 fimbrin-like protein 2[more]
AT4G26700.11.4e-1067.50 fimbrin 1[more]
AT5G55400.11.4e-1067.50 Actin binding Calponin homology (CH) domain-containing protein[more]
AT2G04750.14.0e-1074.36 Actin binding Calponin homology (CH) domain-containing protein[more]
BLAST of CmoCh17G012810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|720087119|ref|XP_010244055.1|1.9e-0997.06PREDICTED: LOW QUALITY PROTEIN: fimbrin-5 [Nelumbo nucifera][more]
gi|802546443|ref|XP_012084895.1|5.5e-0996.97PREDICTED: fimbrin-2 [Jatropha curcas][more]
gi|470107606|ref|XP_004290135.1|5.5e-0996.97PREDICTED: fimbrin-2 [Fragaria vesca subsp. vesca][more]
gi|255572648|ref|XP_002527257.1|5.5e-0996.97PREDICTED: fimbrin-2 [Ricinus communis][more]
gi|702494499|ref|XP_010036748.1|5.5e-0996.97PREDICTED: fimbrin-like protein 2 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003779 actin binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh17G012810CmoCh17G012810gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh17G012810.1CmoCh17G012810.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G012810.1.exon.1CmoCh17G012810.1.exon.1exon
CmoCh17G012810.1.exon.2CmoCh17G012810.1.exon.2exon
CmoCh17G012810.1.exon.3CmoCh17G012810.1.exon.3exon
CmoCh17G012810.1.exon.4CmoCh17G012810.1.exon.4exon
CmoCh17G012810.1.exon.5CmoCh17G012810.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G012810.1.CDS.1CmoCh17G012810.1.CDS.1CDS
CmoCh17G012810.1.CDS.2CmoCh17G012810.1.CDS.2CDS
CmoCh17G012810.1.CDS.3CmoCh17G012810.1.CDS.3CDS
CmoCh17G012810.1.CDS.4CmoCh17G012810.1.CDS.4CDS
CmoCh17G012810.1.CDS.5CmoCh17G012810.1.CDS.5CDS


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001715Calponin homology domainGENE3DG3DSA:1.10.418.10coord: 6..38
score: 2.
IPR001715Calponin homology domainunknownSSF47576Calponin-homology domain, CH-domaincoord: 5..38
score: 1.2
NoneNo IPR availablePANTHERPTHR19961FIMBRIN/PLASTINcoord: 5..37
score: 3.6
NoneNo IPR availablePANTHERPTHR19961:SF25ACTIN BINDING CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 5..37
score: 3.6