CmoCh17G012810 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G012810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionActin binding Calponin (CH) domain-containing protein isoform 1
LocationCmo_Chr17 : 10069113 .. 10069726 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAACATAGACGAGGAGAAAAAGATGAACGCAACCTACATCATTAGCATTGCAAGGAAGCTTGGATGTTCCATATTTTTGCTTCCTGAAGACATCACTGAGGTACTTATCTGAACTTCAGCTCTATCTTTCTTCCCCCTTTATCTTATTGACTGTTACATTTTTAAATTGTTAAAGAATGAATTGATAGGATAAAATTCAAAAGATCTAACAAAATGTTGACAGATTAATATTTAGATAAACCACTCATATCCAGAAATTCTGCAAAGATGGCTTCCCATTGAAATCCATAAAAATAGGAAATTCGAAAAAATAGTTAAGAGAAAATTTATCAAGTTTTGGGTGTTCTAATTTTTTATAGAGACTCGCTCCAAAGCTCTTGTAGCTAAACACATGTGCCTTAGAGGGAACATGTAGGCAAGAGTGTGAACATGAACTTGTAGTTGTGCTTGAGTTAGGGTTATTGTGATGAGCATGATGTGCGAGCAAGGATGCTGGGGCGTTGATGTGGCGTGCACAAGGTGGGAGAGGCTTGAGGGCCAGCAGGGAATGGTTTTAGAAGTTTAATTATGTAGTTTTATGGTGTGGTCCAAAACAAACCTGGCTCGTAG

mRNA sequence

ATGACCAACATAGACGAGGAGAAAAAGATGAACGCAACCTACATCATTAGCATTGCAAGGAAGCTTGGATGTTCCATATTTTTGCTTCCTGAAGACATCACTGAGATAAACCACTCATATCCAGAAATTCTGCAAAGATGGCTTCCCATTGAAATCCATAAAAATAGGAAATTCGAAAAAATAGTTAAGAGAAAATTTATCAAGTTTTGGACTCGCTCCAAAGCTCTTGTAGCTAAACACATGTGCCTTAGAGGGAACATGGTTATTGTGATGAGCATGATGTGCGAGCAAGGATGCTGGGGCGTTGATGTGGCGTGCACAAGGTGGGAGAGGCTTGAGGGCCAGCAGGGAATGTTTTATGGTGTGGTCCAAAACAAACCTGGCTCGTAG

Coding sequence (CDS)

ATGACCAACATAGACGAGGAGAAAAAGATGAACGCAACCTACATCATTAGCATTGCAAGGAAGCTTGGATGTTCCATATTTTTGCTTCCTGAAGACATCACTGAGATAAACCACTCATATCCAGAAATTCTGCAAAGATGGCTTCCCATTGAAATCCATAAAAATAGGAAATTCGAAAAAATAGTTAAGAGAAAATTTATCAAGTTTTGGACTCGCTCCAAAGCTCTTGTAGCTAAACACATGTGCCTTAGAGGGAACATGGTTATTGTGATGAGCATGATGTGCGAGCAAGGATGCTGGGGCGTTGATGTGGCGTGCACAAGGTGGGAGAGGCTTGAGGGCCAGCAGGGAATGTTTTATGGTGTGGTCCAAAACAAACCTGGCTCGTAG
Homology
[Close]
BLAST of CmoCh17G012810 vs. Swiss-Prot
Match: FIMB2_ARATH (Fimbrin-2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATY+ISIARKLGCSIFLLPEDI E+N
Sbjct: 575 DEEKKMNATYVISIARKLGCSIFLLPEDIIEVN 607

[Close]
BLAST of CmoCh17G012810 vs. Swiss-Prot
Match: FIMB5_ARATH (Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           +E+KK+NATYIIS+ARKLGCSIFLLPEDI E+N     IL
Sbjct: 573 EEDKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMMLIL 612

[Close]
BLAST of CmoCh17G012810 vs. Swiss-Prot
Match: FIMB3_ARATH (Fimbrin-3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           D+EK++NATYI+S+ARKLGCS+FLLPEDI E+N     IL
Sbjct: 574 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 613

[Close]
BLAST of CmoCh17G012810 vs. Swiss-Prot
Match: FIMB1_ARATH (Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           D+EK++NATYI+S+ARKLGCS+FLLPEDI E+N     IL
Sbjct: 573 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 612

[Close]
BLAST of CmoCh17G012810 vs. Swiss-Prot
Match: FIMB4_ARATH (Fimbrin-4 OS=Arabidopsis thaliana GN=FIM4 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-09
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 

Query: 6   EEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           EEK +NATYIIS+ARKLGCSIFLLPEDI E+N     IL
Sbjct: 570 EEKNLNATYIISVARKLGCSIFLLPEDILEVNQRMMLIL 608

[Close]
BLAST of CmoCh17G012810 vs. TrEMBL
Match: A0A059A3R8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02088 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810 vs. TrEMBL
Match: A0A067LA47_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15112 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810 vs. TrEMBL
Match: B9SMN8_RICCO (Fimbrin, putative OS=Ricinus communis GN=RCOM_1626860 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810 vs. TrEMBL
Match: V4KYD4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003785mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATY+ISIARKLGCSIFLLPEDITE+N
Sbjct: 543 DEEKKMNATYVISIARKLGCSIFLLPEDITEVN 575

[Close]
BLAST of CmoCh17G012810 vs. TrEMBL
Match: V4K4J3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003785mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATY+ISIARKLGCSIFLLPEDITE+N
Sbjct: 575 DEEKKMNATYVISIARKLGCSIFLLPEDITEVN 607

[Close]
BLAST of CmoCh17G012810 vs. TAIR10
Match: AT5G48460.1 (AT5G48460.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATY+ISIARKLGCSIFLLPEDI E+N
Sbjct: 575 DEEKKMNATYVISIARKLGCSIFLLPEDIIEVN 607

[Close]
BLAST of CmoCh17G012810 vs. TAIR10
Match: AT5G35700.1 (AT5G35700.1 fimbrin-like protein 2)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           +E+KK+NATYIIS+ARKLGCSIFLLPEDI E+N     IL
Sbjct: 573 EEDKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMMLIL 612

[Close]
BLAST of CmoCh17G012810 vs. TAIR10
Match: AT4G26700.1 (AT4G26700.1 fimbrin 1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           D+EK++NATYI+S+ARKLGCS+FLLPEDI E+N     IL
Sbjct: 573 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 612

[Close]
BLAST of CmoCh17G012810 vs. TAIR10
Match: AT5G55400.1 (AT5G55400.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           D+EK++NATYI+S+ARKLGCS+FLLPEDI E+N     IL
Sbjct: 574 DDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 613

[Close]
BLAST of CmoCh17G012810 vs. TAIR10
Match: AT2G04750.1 (AT2G04750.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-10
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 

Query: 6   EEKKMNATYIISIARKLGCSIFLLPEDITEINHSYPEIL 45
           EEK +NATYIIS+ARKLGCSIFLLPEDI E+N     IL
Sbjct: 570 EEKNLNATYIISVARKLGCSIFLLPEDILEVNQRMMLIL 608

[Close]
BLAST of CmoCh17G012810 vs. NCBI nr
Match: gi|720087119|ref|XP_010244055.1| (PREDICTED: LOW QUALITY PROTEIN: fimbrin-5 [Nelumbo nucifera])

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 

Query: 4   IDEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           IDEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 IDEEKKMNATYIISIARKLGCSIFLLPEDITEVN 607

[Close]
BLAST of CmoCh17G012810 vs. NCBI nr
Match: gi|802546443|ref|XP_012084895.1| (PREDICTED: fimbrin-2 [Jatropha curcas])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810 vs. NCBI nr
Match: gi|470107606|ref|XP_004290135.1| (PREDICTED: fimbrin-2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 576 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 608

[Close]
BLAST of CmoCh17G012810 vs. NCBI nr
Match: gi|255572648|ref|XP_002527257.1| (PREDICTED: fimbrin-2 [Ricinus communis])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

[Close]
BLAST of CmoCh17G012810 vs. NCBI nr
Match: gi|702494499|ref|XP_010036748.1| (PREDICTED: fimbrin-like protein 2 [Eucalyptus grandis])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 

Query: 5   DEEKKMNATYIISIARKLGCSIFLLPEDITEIN 38
           DEEKKMNATYIISIARKLGCSIFLLPEDITE+N
Sbjct: 574 DEEKKMNATYIISIARKLGCSIFLLPEDITEVN 606

The following BLAST results are available for this feature:
BLAST of CmoCh17G012810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FIMB2_ARATH2.2e-1090.91Fimbrin-2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1[more]
FIMB5_ARATH1.9e-0972.50Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1[more]
FIMB3_ARATH2.5e-0967.50Fimbrin-3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1[more]
FIMB1_ARATH2.5e-0967.50Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2[more]
FIMB4_ARATH7.2e-0974.36Fimbrin-4 OS=Arabidopsis thaliana GN=FIM4 PE=3 SV=1[more]
BLAST of CmoCh17G012810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059A3R8_EUCGR3.8e-0996.97Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02088 PE=4 SV=1[more]
A0A067LA47_JATCU3.8e-0996.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15112 PE=4 SV=1[more]
B9SMN8_RICCO3.8e-0996.97Fimbrin, putative OS=Ricinus communis GN=RCOM_1626860 PE=4 SV=1[more]
V4KYD4_EUTSA5.0e-0993.94Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003785mg PE=4 SV=1[more]
V4K4J3_EUTSA5.0e-0993.94Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003785mg PE=4 SV=1[more]
BLAST of CmoCh17G012810 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48460.11.3e-1190.91 Actin binding Calponin homology (CH) domain-containing protein[more]
AT5G35700.11.1e-1072.50 fimbrin-like protein 2[more]
AT4G26700.11.4e-1067.50 fimbrin 1[more]
AT5G55400.11.4e-1067.50 Actin binding Calponin homology (CH) domain-containing protein[more]
AT2G04750.14.0e-1074.36 Actin binding Calponin homology (CH) domain-containing protein[more]
BLAST of CmoCh17G012810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|720087119|ref|XP_010244055.1|1.9e-0997.06PREDICTED: LOW QUALITY PROTEIN: fimbrin-5 [Nelumbo nucifera][more]
gi|802546443|ref|XP_012084895.1|5.5e-0996.97PREDICTED: fimbrin-2 [Jatropha curcas][more]
gi|470107606|ref|XP_004290135.1|5.5e-0996.97PREDICTED: fimbrin-2 [Fragaria vesca subsp. vesca][more]
gi|255572648|ref|XP_002527257.1|5.5e-0996.97PREDICTED: fimbrin-2 [Ricinus communis][more]
gi|702494499|ref|XP_010036748.1|5.5e-0996.97PREDICTED: fimbrin-like protein 2 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003779 actin binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012810.1CmoCh17G012810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001715Calponin homology domainGENE3DG3DSA:1.10.418.10coord: 6..38
score: 2.
IPR001715Calponin homology domainunknownSSF47576Calponin-homology domain, CH-domaincoord: 5..38
score: 1.2
NoneNo IPR availablePANTHERPTHR19961FIMBRIN/PLASTINcoord: 5..37
score: 3.6
NoneNo IPR availablePANTHERPTHR19961:SF25ACTIN BINDING CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 5..37
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G012810Cucurbita moschata (Rifu)cmocmoB311
CmoCh17G012810Cucumber (Gy14) v1cgycmoB1076
CmoCh17G012810Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G012810Cucurbita maxima (Rimu)cmacmoB888
CmoCh17G012810Wild cucumber (PI 183967)cmocpiB377
CmoCh17G012810Cucumber (Chinese Long) v2cmocuB374
CmoCh17G012810Melon (DHL92) v3.5.1cmomeB321
CmoCh17G012810Watermelon (Charleston Gray)cmowcgB302
CmoCh17G012810Watermelon (97103) v1cmowmB325
CmoCh17G012810Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G012810Bottle gourd (USVL1VR-Ls)cmolsiB334
CmoCh17G012810Cucumber (Gy14) v2cgybcmoB903
CmoCh17G012810Melon (DHL92) v3.6.1cmomedB360
CmoCh17G012810Melon (DHL92) v3.6.1cmomedB363
CmoCh17G012810Melon (DHL92) v3.6.1cmomedB368
CmoCh17G012810Silver-seed gourdcarcmoB0021
CmoCh17G012810Silver-seed gourdcarcmoB0112
CmoCh17G012810Cucumber (Chinese Long) v3cmocucB0450
CmoCh17G012810Watermelon (97103) v2cmowmbB373
CmoCh17G012810Wax gourdcmowgoB0492