CmoCh17G009750.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G009750.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr17 : 8508526 .. 8509485 (+)
Sequence length912
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACGACTCTCCACGGAATCGGTGGTAACCGATGTACTTGGAATCCGGCGAGACAAACGGGTTGTAATGATGAAAACTGGGATTCAATTTCTGGGTAATCGGGTCGAATTCGTCTGTCCCGGAATTGTAAATCTCAATGTGTCGGAATTTGTTGTCGGGTCTTCGGGTAGCGACGACCACTCGTTTCCGGTCGTTCATGGCGGCCGGAGTGAAGCAATGGAGACCCGCCGGAGTAACCCGGATCGGAACAGGGGGGACAGAGGAATCGAGATTTTCAGGAATCTCCACTCTAAAAATGCTCCACCACCCATCCTCGGCCTGCCGGTGGAAGTAGACGGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGACCCGAAACTACAACTCGTCGATCCGGGTCAGAAGATCTAAAAACCACAATTTCTGTGTGGAGCTCCTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCGACGAACTTCCCACTTTCCGAAACCGCCGGACTGAAGTCGACAGACCCACAAGGAGTCAGGCGAGTCACCGAATCGGAACCGTCCAACCCAGTGAAATACAGAGCGGACCAGCTCGTGAAGGGCTTATGGGGGTTTTCATGAGCGGAGATAAAATAGAGGCGATCATTTCTGATAATGGGTCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGTAGCAACTTGGGGGCGGAATTGGGAGAATTGGAGAGATAAACTCTAGGGGAGCCAGATCGTTCAGAGATGAAGACGATGGATTGTTGATTATCGACGAATTGGGCATTGAAATTGACGGAGATTCCGTCGGTAAGGCAGTGTTCGGTGGTGGGAGAACTGAGTGGAACAGAGAAGGTGTCGAAGCCGTATTGAGTGCGTCCGACGGTGGTGAAGATGACAGTGCCGGTGGGGTTAGTCATTTGGGGAAGTGGCGAAAGTGA

mRNA sequence

ATGAGACGACTCTCCACGGAATCGGTGGTAACCGATGTACTTGGAATCCGGCGAGACAAACGGGTTGTAATGATGAAAACTGGGATTCAATTTCTGGGTAATCGGGTCGAATTCGTCTGTCCCGGAATTGTAAATCTCAATGTGTCGGAATTTGTTGTCGGGTCTTCGGGTAGCGACGACCACTCGTTTCCGGTCGTTCATGGCGGCCGGAGTGAAGCAATGGAGACCCGCCGGAGTAACCCGGATCGGAACAGGGGGGACAGAGGAATCGAGATTTTCAGGAATCTCCACTCTAAAAATGCTCCACCACCCATCCTCGGCCTGCCGGTGGAAGTAGACGGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGACCCGAAACTACAACTCGTCGATCCGGGTCAGAAGATCTAAAAACCACAATTTCTGTGTGGAGCTCCTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCGACGAACTTCCCACTTTCCGAAACCGCCGGACTGAAGTCGACAGACCCACAAGGAGTCAGGCGAGTCACCGAATCGGAACCGTCCAACCCAGTGAAATACAGAGCGGACCAGCTCGTGAAGGGCTTATGGGGGTTTTCATGAGCGGAGATAAAATAGAGGCGATCATTTCTGATAATGGGTCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGGGAGCCAGATCGTTCAGAGATGAAGACGATGGATTGTTGATTATCGACGAATTGGGCATTGAAATTGACGGAGATTCCGTCGGTAAGGCAGTGTTCGGTGGTGGGAGAACTGAGTGGAACAGAGAAGGTGTCGAAGCCGTATTGAGTGCGTCCGACGGTGGTGAAGATGACAGTGCCGGTGGGGTTAGTCATTTGGGGAAGTGGCGAAAGTGA

Coding sequence (CDS)

ATGAGACGACTCTCCACGGAATCGGTGGTAACCGATGTACTTGGAATCCGGCGAGACAAACGGGTTGTAATGATGAAAACTGGGATTCAATTTCTGGGTAATCGGGTCGAATTCGTCTGTCCCGGAATTGTAAATCTCAATGTGTCGGAATTTGTTGTCGGGTCTTCGGGTAGCGACGACCACTCGTTTCCGGTCGTTCATGGCGGCCGGAGTGAAGCAATGGAGACCCGCCGGAGTAACCCGGATCGGAACAGGGGGGACAGAGGAATCGAGATTTTCAGGAATCTCCACTCTAAAAATGCTCCACCACCCATCCTCGGCCTGCCGGTGGAAGTAGACGGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGACCCGAAACTACAACTCGTCGATCCGGGTCAGAAGATCTAAAAACCACAATTTCTGTGTGGAGCTCCTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCGACGAACTTCCCACTTTCCGAAACCGCCGGACTGAAGTCGACAGACCCACAAGGAGTCAGGCGAGTCACCGAATCGGAACCGTCCAACCCAGTGAAATACAGAGCGGACCAGCTCGTGAAGGGCTTATGGGGGTTTTCATGAGCGGAGATAAAATAGAGGCGATCATTTCTGATAATGGGTCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGGGAGCCAGATCGTTCAGAGATGAAGACGATGGATTGTTGATTATCGACGAATTGGGCATTGAAATTGACGGAGATTCCGTCGGTAAGGCAGTGTTCGGTGGTGGGAGAACTGAGTGGAACAGAGAAGGTGTCGAAGCCGTATTGAGTGCGTCCGACGGTGGTGAAGATGACAGTGCCGGTGGGGTTAGTCATTTGGGGAAGTGGCGAAAGTGA
Homology
[Close]
BLAST of CmoCh17G009750.1 vs. NCBI nr
Match: gi|297744038|emb|CBI37008.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 8.6e-21
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 1 

Query: 62  SFPVVHGGRSEAMETRRSNPDRNRGD-RGIEIFRNLHSKNAPPPILGLPVEVDGGVAGPR 121
           S   +HG RSE + + R  P R+ G+ R ++  R +H++NAPP I+ LPV+V+ G+AGP 
Sbjct: 198 SLTTLHGRRSETVNSWRGYPARSLGNTRRLKTLRQIHAENAPPSIISLPVKVEVGIAGPG 257

Query: 122 RPSAPTRNYNSSIRVRRSKNHNFCVELLKFAAPRTRAIRSNRDELPTFRNRRTEVDRPTR 181
            P+      N+  R+R  +N+N  V+L+KF APRTR I  N  EL   RNR T +D   R
Sbjct: 258 GPTTTLAYNNTLFRLRFPENNNISVQLMKFTAPRTRPIGCNSYELSGPRNRWTVIDNSVR 317

Query: 182 SQASHRIGTVQPSEIQSGPAREGLM-------GVFMSGDKIEAIISDNGSVVKAASGGGR 239
           SQ  H    ++PS + S PA EGL+       G+ +   ++EA++        A  G G 
Sbjct: 318 SQL-HNCLVIKPSGVNSRPADEGLLWPCSGLIGIEIERKEVEAVVR------SANCGEGN 375

The following BLAST results are available for this feature:
BLAST of CmoCh17G009750.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G009750.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh17G009750.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G009750.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297744038|emb|CBI37008.3|8.6e-2137.84unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh17G009750CmoCh17G009750gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh17G009750.1CmoCh17G009750.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G009750.1.exon.1CmoCh17G009750.1.exon.1exon
CmoCh17G009750.1.exon.2CmoCh17G009750.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh17G009750.1.CDS.1CmoCh17G009750.1.CDS.1CDS
CmoCh17G009750.1.CDS.2CmoCh17G009750.1.CDS.2CDS