CmoCh17G009750 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G009750
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr17 : 8508526 .. 8509485 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACGACTCTCCACGGAATCGGTGGTAACCGATGTACTTGGAATCCGGCGAGACAAACGGGTTGTAATGATGAAAACTGGGATTCAATTTCTGGGTAATCGGGTCGAATTCGTCTGTCCCGGAATTGTAAATCTCAATGTGTCGGAATTTGTTGTCGGGTCTTCGGGTAGCGACGACCACTCGTTTCCGGTCGTTCATGGCGGCCGGAGTGAAGCAATGGAGACCCGCCGGAGTAACCCGGATCGGAACAGGGGGGACAGAGGAATCGAGATTTTCAGGAATCTCCACTCTAAAAATGCTCCACCACCCATCCTCGGCCTGCCGGTGGAAGTAGACGGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGACCCGAAACTACAACTCGTCGATCCGGGTCAGAAGATCTAAAAACCACAATTTCTGTGTGGAGCTCCTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCGACGAACTTCCCACTTTCCGAAACCGCCGGACTGAAGTCGACAGACCCACAAGGAGTCAGGCGAGTCACCGAATCGGAACCGTCCAACCCAGTGAAATACAGAGCGGACCAGCTCGTGAAGGGCTTATGGGGGTTTTCATGAGCGGAGATAAAATAGAGGCGATCATTTCTGATAATGGGTCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGTAGCAACTTGGGGGCGGAATTGGGAGAATTGGAGAGATAAACTCTAGGGGAGCCAGATCGTTCAGAGATGAAGACGATGGATTGTTGATTATCGACGAATTGGGCATTGAAATTGACGGAGATTCCGTCGGTAAGGCAGTGTTCGGTGGTGGGAGAACTGAGTGGAACAGAGAAGGTGTCGAAGCCGTATTGAGTGCGTCCGACGGTGGTGAAGATGACAGTGCCGGTGGGGTTAGTCATTTGGGGAAGTGGCGAAAGTGA

mRNA sequence

ATGAGACGACTCTCCACGGAATCGGTGGTAACCGATGTACTTGGAATCCGGCGAGACAAACGGGTTGTAATGATGAAAACTGGGATTCAATTTCTGGGTAATCGGGTCGAATTCGTCTGTCCCGGAATTGTAAATCTCAATGTGTCGGAATTTGTTGTCGGGTCTTCGGGTAGCGACGACCACTCGTTTCCGGTCGTTCATGGCGGCCGGAGTGAAGCAATGGAGACCCGCCGGAGTAACCCGGATCGGAACAGGGGGGACAGAGGAATCGAGATTTTCAGGAATCTCCACTCTAAAAATGCTCCACCACCCATCCTCGGCCTGCCGGTGGAAGTAGACGGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGACCCGAAACTACAACTCGTCGATCCGGGTCAGAAGATCTAAAAACCACAATTTCTGTGTGGAGCTCCTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCGACGAACTTCCCACTTTCCGAAACCGCCGGACTGAAGTCGACAGACCCACAAGGAGTCAGGCGAGTCACCGAATCGGAACCGTCCAACCCAGTGAAATACAGAGCGGACCAGCTCGTGAAGGGCTTATGGGGGTTTTCATGAGCGGAGATAAAATAGAGGCGATCATTTCTGATAATGGGTCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGGGAGCCAGATCGTTCAGAGATGAAGACGATGGATTGTTGATTATCGACGAATTGGGCATTGAAATTGACGGAGATTCCGTCGGTAAGGCAGTGTTCGGTGGTGGGAGAACTGAGTGGAACAGAGAAGGTGTCGAAGCCGTATTGAGTGCGTCCGACGGTGGTGAAGATGACAGTGCCGGTGGGGTTAGTCATTTGGGGAAGTGGCGAAAGTGA

Coding sequence (CDS)

ATGAGACGACTCTCCACGGAATCGGTGGTAACCGATGTACTTGGAATCCGGCGAGACAAACGGGTTGTAATGATGAAAACTGGGATTCAATTTCTGGGTAATCGGGTCGAATTCGTCTGTCCCGGAATTGTAAATCTCAATGTGTCGGAATTTGTTGTCGGGTCTTCGGGTAGCGACGACCACTCGTTTCCGGTCGTTCATGGCGGCCGGAGTGAAGCAATGGAGACCCGCCGGAGTAACCCGGATCGGAACAGGGGGGACAGAGGAATCGAGATTTTCAGGAATCTCCACTCTAAAAATGCTCCACCACCCATCCTCGGCCTGCCGGTGGAAGTAGACGGTGGAGTCGCCGGACCACGACGGCCATCCGCCCCGACCCGAAACTACAACTCGTCGATCCGGGTCAGAAGATCTAAAAACCACAATTTCTGTGTGGAGCTCCTGAAATTCGCCGCCCCAAGAACGAGAGCCATAAGAAGCAACCGCGACGAACTTCCCACTTTCCGAAACCGCCGGACTGAAGTCGACAGACCCACAAGGAGTCAGGCGAGTCACCGAATCGGAACCGTCCAACCCAGTGAAATACAGAGCGGACCAGCTCGTGAAGGGCTTATGGGGGTTTTCATGAGCGGAGATAAAATAGAGGCGATCATTTCTGATAATGGGTCGGTCGTGAAAGCAGCTTCCGGGGGCGGAAGGGGAGCCAGATCGTTCAGAGATGAAGACGATGGATTGTTGATTATCGACGAATTGGGCATTGAAATTGACGGAGATTCCGTCGGTAAGGCAGTGTTCGGTGGTGGGAGAACTGAGTGGAACAGAGAAGGTGTCGAAGCCGTATTGAGTGCGTCCGACGGTGGTGAAGATGACAGTGCCGGTGGGGTTAGTCATTTGGGGAAGTGGCGAAAGTGA
Homology
[Close]
BLAST of CmoCh17G009750 vs. NCBI nr
Match: gi|297744038|emb|CBI37008.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 8.6e-21
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 1 

Query: 62  SFPVVHGGRSEAMETRRSNPDRNRGD-RGIEIFRNLHSKNAPPPILGLPVEVDGGVAGPR 121
           S   +HG RSE + + R  P R+ G+ R ++  R +H++NAPP I+ LPV+V+ G+AGP 
Sbjct: 198 SLTTLHGRRSETVNSWRGYPARSLGNTRRLKTLRQIHAENAPPSIISLPVKVEVGIAGPG 257

Query: 122 RPSAPTRNYNSSIRVRRSKNHNFCVELLKFAAPRTRAIRSNRDELPTFRNRRTEVDRPTR 181
            P+      N+  R+R  +N+N  V+L+KF APRTR I  N  EL   RNR T +D   R
Sbjct: 258 GPTTTLAYNNTLFRLRFPENNNISVQLMKFTAPRTRPIGCNSYELSGPRNRWTVIDNSVR 317

Query: 182 SQASHRIGTVQPSEIQSGPAREGLM-------GVFMSGDKIEAIISDNGSVVKAASGGGR 239
           SQ  H    ++PS + S PA EGL+       G+ +   ++EA++        A  G G 
Sbjct: 318 SQL-HNCLVIKPSGVNSRPADEGLLWPCSGLIGIEIERKEVEAVVR------SANCGEGN 375

The following BLAST results are available for this feature:
BLAST of CmoCh17G009750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G009750 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh17G009750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G009750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297744038|emb|CBI37008.3|8.6e-2137.84unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G009750.1CmoCh17G009750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G009750ClCG09G004680Watermelon (Charleston Gray)cmowcgB299
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G009750Silver-seed gourdcarcmoB0152
CmoCh17G009750Silver-seed gourdcarcmoB0608
CmoCh17G009750Silver-seed gourdcarcmoB1032
CmoCh17G009750Silver-seed gourdcarcmoB1103
CmoCh17G009750Cucumber (Chinese Long) v3cmocucB0455
CmoCh17G009750Watermelon (97103) v2cmowmbB344
CmoCh17G009750Watermelon (97103) v2cmowmbB369
CmoCh17G009750Wax gourdcmowgoB0452
CmoCh17G009750Wax gourdcmowgoB0486
CmoCh17G009750Cucurbita moschata (Rifu)cmocmoB199
CmoCh17G009750Cucurbita moschata (Rifu)cmocmoB299
CmoCh17G009750Cucurbita moschata (Rifu)cmocmoB319
CmoCh17G009750Cucumber (Gy14) v1cgycmoB0340
CmoCh17G009750Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G009750Cucurbita maxima (Rimu)cmacmoB466
CmoCh17G009750Cucurbita maxima (Rimu)cmacmoB896
CmoCh17G009750Wild cucumber (PI 183967)cmocpiB381
CmoCh17G009750Cucumber (Chinese Long) v2cmocuB378
CmoCh17G009750Melon (DHL92) v3.5.1cmomeB318
CmoCh17G009750Watermelon (97103) v1cmowmB322
CmoCh17G009750Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G009750Cucurbita pepo (Zucchini)cmocpeB339
CmoCh17G009750Cucurbita pepo (Zucchini)cmocpeB367
CmoCh17G009750Bottle gourd (USVL1VR-Ls)cmolsiB337
CmoCh17G009750Bottle gourd (USVL1VR-Ls)cmolsiB340
CmoCh17G009750Cucumber (Gy14) v2cgybcmoB909
CmoCh17G009750Melon (DHL92) v3.6.1cmomedB365