CmoCh17G005660.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAGTTCAAAGATTGGAATTGAGAAGTTTGATGTATCCGATTTCAGTTTCTGGAAGATGCAGATTGAAGATTATCTATACCAGAAATGTCTTTATGAACCCCTGTTGGGATTGATGCCGGATACCATGACCACGGAGCAGTGGAAGCTCAAGGATCGAAAAGCCTTAGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCGTTCAATATCATCAAGAAGAAGACTACGTCAGATTTGCTGAAGGCGCTGTCGAATATGTATGAAAAATCATCGGCTATGAACAAGGTGTATTTAATGCGGAGATTGTTCAATCTACAGATGTCTGAAGGTGGATCTGTTGTGGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTTGGTGGAAATTAATTTTGAAGATGAAATTGAAGCATTTATTTTGATGTCATCTTTATCCAAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAATTTCTGAGGATCTGATAAACTGAAGTTTGATGAAATTCGAGATGTAGTTCTCAGCGAAAGTACTCGCAAACGAGAAATTGGAAATTTATCTGGTAGTGCTCTCAGTCTTGACCAACGGGGAAGAAGTAAACCAAAGGGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAATGTGTTGGAATTGTGGAGAAAAAGGTCACTTTCGGACAGGTTATACAAGATCAAAGAGGAAGCAGAATCACAAATCTAGAGATGATGATGATTCTATAAATTCAACAGAAGACATTGGGGATGCTCTAGTCCTCAGCGTGGATAGTTCGATGGAATCCTAGATTTTGGATACAGGTGCATCTTTTCATTCTTCTTCAAATAAAGAGTTGTTCCGGAATTTCAAGTCTCGAAAGTTCAAGAAGGTGTATCTTGCCAACAACAAAGATTTGGAGATTAAAGGAAAAGAGGATGTTTGCATAAAAACTCCGGCAGGAAATCAGTGGACATTAAAGGATGTCAGCTATATTCCTGGTCTCAAGAAGAACCTGATATCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAGAGTTAGGAAAGAGTTCATGGAAGATTATGAGGGTGCTACGGTAG ATGGAAAGTTCAAAGATTGGAATTGAGAAGTTTGATGTATCCGATTTCAGTTTCTGGAAGATGCAGATTGAAGATTATCTATACCAGAAATGTCTTTATGAACCCCTGTTGGGATTGATGCCGGATACCATGACCACGGAGCAGTGGAAGCTCAAGGATCGAAAAGCCTTAGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCGTTCAATATCATCAAGAAGAAGACTACGTCAGATTTGCTGAAGGCGCTGTCGAATATGTATGAAAAATCATCGGCTATGAACAAGGTGTATTTAATGCGGAGATTGTTCAATCTACAGATGTCTGAAGGTGCATCTTTTCATTCTTCTTCAAATAAAGAGTTGTTCCGGAATTTCAAGTCTCGAAAGTTCAAGAAGGTGTATCTTGCCAACAACAAAGATTTGGAGATTAAAGGAAAAGAGGATGTTTGCATAAAAACTCCGGCAGGAAATCAGTGGACATTAAAGGATGTCAGCTATATTCCTGGTCTCAAGAAGAACCTGATATCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAGAGTTAGGAAAGAGTTCATGGAAGATTATGAGGGTGCTACGGTAG ATGGAAAGTTCAAAGATTGGAATTGAGAAGTTTGATGTATCCGATTTCAGTTTCTGGAAGATGCAGATTGAAGATTATCTATACCAGAAATGTCTTTATGAACCCCTGTTGGGATTGATGCCGGATACCATGACCACGGAGCAGTGGAAGCTCAAGGATCGAAAAGCCTTAGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCGTTCAATATCATCAAGAAGAAGACTACGTCAGATTTGCTGAAGGCGCTGTCGAATATGTATGAAAAATCATCGGCTATGAACAAGGTGTATTTAATGCGGAGATTGTTCAATCTACAGATGTCTGAAGGTGCATCTTTTCATTCTTCTTCAAATAAAGAGTTGTTCCGGAATTTCAAGTCTCGAAAGTTCAAGAAGGTGTATCTTGCCAACAACAAAGATTTGGAGATTAAAGGAAAAGAGGATGTTTGCATAAAAACTCCGGCAGGAAATCAGTGGACATTAAAGGATGTCAGCTATATTCCTGGTCTCAAGAAGAACCTGATATCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAGAGTTAGGAAAGAGTTCATGGAAGATTATGAGGGTGCTACGGTAG
BLAST of CmoCh17G005660.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. TrEMBL
Match: A0A0B2SMV2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_043978 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 8.9e-37 Identity = 81/121 (66.94%), Postives = 98/121 (80.99%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. TrEMBL
Match: A0A0B2QX90_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_030443 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. TrEMBL
Match: A0A0B2PMZ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_045590 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. TrEMBL
Match: A0A0B2R8C1_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_024011 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. TrEMBL
Match: A0A0B2QXU5_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_043658 PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. TAIR10
Match: AT3G29785.1 (AT3G29785.1 unknown protein) HSP 1 Score: 79.7 bits (195), Expect = 2.3e-15 Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. NCBI nr
Match: gi|734431520|gb|KHN45809.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]) HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36 Identity = 81/121 (66.94%), Postives = 98/121 (80.99%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. NCBI nr
Match: gi|734389262|gb|KHN26246.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]) HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. NCBI nr
Match: gi|734339291|gb|KHN08937.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]) HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. NCBI nr
Match: gi|734393462|gb|KHN28193.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]) HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of CmoCh17G005660.1 vs. NCBI nr
Match: gi|734389927|gb|KHN26496.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]) HSP 1 Score: 160.2 bits (404), Expect = 3.7e-36 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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