CmoCh17G005660 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G005660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
LocationCmo_Chr17 : 5819839 .. 5820975 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGTTCAAAGATTGGAATTGAGAAGTTTGATGTATCCGATTTCAGTTTCTGGAAGATGCAGATTGAAGATTATCTATACCAGAAATGTCTTTATGAACCCCTGTTGGGATTGATGCCGGATACCATGACCACGGAGCAGTGGAAGCTCAAGGATCGAAAAGCCTTAGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCGTTCAATATCATCAAGAAGAAGACTACGTCAGATTTGCTGAAGGCGCTGTCGAATATGTATGAAAAATCATCGGCTATGAACAAGGTGTATTTAATGCGGAGATTGTTCAATCTACAGATGTCTGAAGGTGGATCTGTTGTGGATCATATAAATGAATTCAATATGATCGTAAGTCAACTGAGTTTGGTGGAAATTAATTTTGAAGATGAAATTGAAGCATTTATTTTGATGTCATCTTTATCCAAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAATTTCTGAGGATCTGATAAACTGAAGTTTGATGAAATTCGAGATGTAGTTCTCAGCGAAAGTACTCGCAAACGAGAAATTGGAAATTTATCTGGTAGTGCTCTCAGTCTTGACCAACGGGGAAGAAGTAAACCAAAGGGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAATGTGTTGGAATTGTGGAGAAAAAGGTCACTTTCGGACAGGTTATACAAGATCAAAGAGGAAGCAGAATCACAAATCTAGAGATGATGATGATTCTATAAATTCAACAGAAGACATTGGGGATGCTCTAGTCCTCAGCGTGGATAGTTCGATGGAATCCTAGATTTTGGATACAGGTGCATCTTTTCATTCTTCTTCAAATAAAGAGTTGTTCCGGAATTTCAAGTCTCGAAAGTTCAAGAAGGTGTATCTTGCCAACAACAAAGATTTGGAGATTAAAGGAAAAGAGGATGTTTGCATAAAAACTCCGGCAGGAAATCAGTGGACATTAAAGGATGTCAGCTATATTCCTGGTCTCAAGAAGAACCTGATATCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAGAGTTAGGAAAGAGTTCATGGAAGATTATGAGGGTGCTACGGTAG

mRNA sequence

ATGGAAAGTTCAAAGATTGGAATTGAGAAGTTTGATGTATCCGATTTCAGTTTCTGGAAGATGCAGATTGAAGATTATCTATACCAGAAATGTCTTTATGAACCCCTGTTGGGATTGATGCCGGATACCATGACCACGGAGCAGTGGAAGCTCAAGGATCGAAAAGCCTTAGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCGTTCAATATCATCAAGAAGAAGACTACGTCAGATTTGCTGAAGGCGCTGTCGAATATGTATGAAAAATCATCGGCTATGAACAAGGTGTATTTAATGCGGAGATTGTTCAATCTACAGATGTCTGAAGGTGCATCTTTTCATTCTTCTTCAAATAAAGAGTTGTTCCGGAATTTCAAGTCTCGAAAGTTCAAGAAGGTGTATCTTGCCAACAACAAAGATTTGGAGATTAAAGGAAAAGAGGATGTTTGCATAAAAACTCCGGCAGGAAATCAGTGGACATTAAAGGATGTCAGCTATATTCCTGGTCTCAAGAAGAACCTGATATCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAGAGTTAGGAAAGAGTTCATGGAAGATTATGAGGGTGCTACGGTAG

Coding sequence (CDS)

ATGGAAAGTTCAAAGATTGGAATTGAGAAGTTTGATGTATCCGATTTCAGTTTCTGGAAGATGCAGATTGAAGATTATCTATACCAGAAATGTCTTTATGAACCCCTGTTGGGATTGATGCCGGATACCATGACCACGGAGCAGTGGAAGCTCAAGGATCGAAAAGCCTTAGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCGTTCAATATCATCAAGAAGAAGACTACGTCAGATTTGCTGAAGGCGCTGTCGAATATGTATGAAAAATCATCGGCTATGAACAAGGTGTATTTAATGCGGAGATTGTTCAATCTACAGATGTCTGAAGGTGCATCTTTTCATTCTTCTTCAAATAAAGAGTTGTTCCGGAATTTCAAGTCTCGAAAGTTCAAGAAGGTGTATCTTGCCAACAACAAAGATTTGGAGATTAAAGGAAAAGAGGATGTTTGCATAAAAACTCCGGCAGGAAATCAGTGGACATTAAAGGATGTCAGCTATATTCCTGGTCTCAAGAAGAACCTGATATCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAGAGTTAGGAAAGAGTTCATGGAAGATTATGAGGGTGCTACGGTAG
Homology
[Close]
BLAST of CmoCh17G005660 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSD-FSFWKMQIEDYLYQKCLYEPLL--GLMPDTMTTEQWKLKDRKAL 60
           M   K  + KF+  + FS W+ ++ D L Q+ L++ L      PDTM  E W   D +A 
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 61  GLIRLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHS 120
             IRL LS +V  NII + T   +   L ++Y   +  NK+YL ++L+ L MSEG +F S
Sbjct: 61  SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120

[Close]
BLAST of CmoCh17G005660 vs. TrEMBL
Match: A0A0B2SMV2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_043978 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.9e-37
Identity = 81/121 (66.94%), Postives = 98/121 (80.99%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEKSSA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTAVLMKALSDMYEKSSAANKVYLMRRLFNLKMGEGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. TrEMBL
Match: A0A0B2QX90_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_030443 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEK SA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTAGLMKALSDMYEKPSAANKVYLMRRLFNLKMGEGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. TrEMBL
Match: A0A0B2PMZ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_045590 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEK SA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTTGLMKALSDMYEKPSAANKVYLMRRLFNLKMGEGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. TrEMBL
Match: A0A0B2R8C1_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_024011 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEK SA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTAGLMKALSDMYEKPSAANKVYLMRRLFNLKMGEGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. TrEMBL
Match: A0A0B2QXU5_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_043658 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEK SA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTAGLMKALSDMYEKPSAANKVYLMRRLFNLKMREGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. TAIR10
Match: AT3G29785.1 (AT3G29785.1 unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-15
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 1 

Query: 9  EKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLIRLTLSRNV 68
          +K D + +SF +M+IEDYLY K L++PL G   +TM+ + W +  R+ L +IRLT+S+N+
Sbjct: 7  DKVDGTSYSFCRMKIEDYLYGKKLHQPL-GKKVETMSQDDWNILYRQVLDVIRLTISKNI 66

Query: 69 AFNIIKKKTTSDLLKALSNMYEKSSAMNKV 99
          A N+ K+K+   L+K LS++Y+K S  N V
Sbjct: 67 AHNVAKEKSPDGLMKVLSDIYKKPSTNNTV 95

[Close]
BLAST of CmoCh17G005660 vs. NCBI nr
Match: gi|734431520|gb|KHN45809.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 81/121 (66.94%), Postives = 98/121 (80.99%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEKSSA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTAVLMKALSDMYEKSSAANKVYLMRRLFNLKMGEGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. NCBI nr
Match: gi|734389262|gb|KHN26246.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEK SA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTAGLMKALSDMYEKPSAANKVYLMRRLFNLKMGEGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. NCBI nr
Match: gi|734339291|gb|KHN08937.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEK SA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTTGLMKALSDMYEKPSAANKVYLMRRLFNLKMGEGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. NCBI nr
Match: gi|734393462|gb|KHN28193.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEK SA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTAGLMKALSDMYEKPSAANKVYLMRRLFNLKMGEGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

[Close]
BLAST of CmoCh17G005660 vs. NCBI nr
Match: gi|734389927|gb|KHN26496.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 160.2 bits (404), Expect = 3.7e-36
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 

Query: 1   MESSKIGIEKFDVSDFSFWKMQIEDYLYQKCLYEPLLGLMPDTMTTEQWKLKDRKALGLI 60
           +E  K+ IEKFD  DFSFWKMQIEDYLYQK LY+PL G+ P+ M  E+W L DR+ALG+I
Sbjct: 3   LEEGKVKIEKFDGRDFSFWKMQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVI 62

Query: 61  RLTLSRNVAFNIIKKKTTSDLLKALSNMYEKSSAMNKVYLMRRLFNLQMSEGASFHSSSN 120
           RLTL++NVAFNI+ +KTT+ L+KALS+MYEK SA NKVYLMRRLFNL+M EG S     N
Sbjct: 63  RLTLAKNVAFNIVNEKTTAGLMKALSDMYEKPSAANKVYLMRRLFNLKMREGISVTDHIN 122

Query: 121 K 122
           +
Sbjct: 123 E 123

The following BLAST results are available for this feature:
BLAST of CmoCh17G005660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC1.2e-1036.59Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CmoCh17G005660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2SMV2_GLYSO8.9e-3766.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin... [more]
A0A0B2QX90_GLYSO2.0e-3666.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin... [more]
A0A0B2PMZ6_GLYSO2.0e-3666.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin... [more]
A0A0B2R8C1_GLYSO2.0e-3666.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin... [more]
A0A0B2QXU5_GLYSO2.6e-3666.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin... [more]
BLAST of CmoCh17G005660 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G29785.12.3e-1544.44 unknown protein[more]
BLAST of CmoCh17G005660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|734431520|gb|KHN45809.1|1.3e-3666.94Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so... [more]
gi|734389262|gb|KHN26246.1|2.9e-3666.12Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so... [more]
gi|734339291|gb|KHN08937.1|2.9e-3666.12Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so... [more]
gi|734393462|gb|KHN28193.1|2.9e-3666.12Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so... [more]
gi|734389927|gb|KHN26496.1|3.7e-3666.12Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G005660.1CmoCh17G005660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 10..112
score: 1.2
NoneNo IPR availablePANTHERPTHR34676:SF1SUBFAMILY NOT NAMEDcoord: 10..112
score: 1.2
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 49..118
score: 5.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G005660Cucumber (Chinese Long) v3cmocucB0438
CmoCh17G005660Cucumber (Chinese Long) v3cmocucB0441
CmoCh17G005660Watermelon (97103) v2cmowmbB368
CmoCh17G005660Cucurbita moschata (Rifu)cmocmoB323
CmoCh17G005660Cucumber (Gy14) v1cgycmoB1001
CmoCh17G005660Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G005660Cucurbita maxima (Rimu)cmacmoB900
CmoCh17G005660Wild cucumber (PI 183967)cmocpiB366
CmoCh17G005660Wild cucumber (PI 183967)cmocpiB370
CmoCh17G005660Cucumber (Chinese Long) v2cmocuB364
CmoCh17G005660Cucumber (Chinese Long) v2cmocuB367
CmoCh17G005660Watermelon (Charleston Gray)cmowcgB332
CmoCh17G005660Watermelon (97103) v1cmowmB333
CmoCh17G005660Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G005660Cucurbita pepo (Zucchini)cmocpeB354
CmoCh17G005660Bottle gourd (USVL1VR-Ls)cmolsiB350
CmoCh17G005660Cucumber (Gy14) v2cgybcmoB739
CmoCh17G005660Cucumber (Gy14) v2cgybcmoB742
CmoCh17G005660Melon (DHL92) v3.6.1cmomedB371
CmoCh17G005660Melon (DHL92) v3.6.1cmomedB372
CmoCh17G005660Silver-seed gourdcarcmoB0117
CmoCh17G005660Silver-seed gourdcarcmoB0306