CmoCh17G005170.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G005170.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S ribosomal protein S11, chloroplastic
Location	Cmo_Chr17 : 4993052 .. 4995130 (-)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGGCCCGGCCCAAACCTAACGAAAGAGGAAGAAGTGATCAGAGCTGTAATTGTACGTACTGAACTCAAACGAGAAACAGTATGATAATACGATATGATGACAATGCTTTGTTATTGATCAAGAAGGAAATGCAAAAGGAACTCGAATTTGTGGTGCGATTGCCCGAGAATAGAGACAGTGAAATTTCACTAAAAGAATTTCATTAGCACCTTCAGTCTTATAAGATGAGATGAGACCGTGGGTTAGTTAGAGTAGTTGAATGAAATGAATTAGTGTGTATAACGTATATACCTTTTCAAATGAATAACTATTTATGAATCATGCCAAGCCAAGCATGTTGATTAGACCACAATGAAAAGTAACCAAGAATTAGCCTTTCTCATGGGTAAGGACACTATTGCTAACAGAATAACCCCTCTCCCTACCGATCGAGCTCTTTCACTCTCCTGTATAAACACTCAAAAAAACAAGAATGATCCTATCCTCTGTCTATTTTTAGGGATCAAATTTAGTAAAGGTAATTCATAAGTCAATCCTCAAGAAGAATCAATTTGACTTAACTGTCAGGAAAGACGAAAGATTCCTTCTATCTCTCCCTTATTTTTTGGGATAAAAGAGAGTCAAGGTAATGAAACAGTCAATCCTCTCGAAGAATCAATTCGACTTAACTGTAAGGAAAGACGAAAGATTCCTTCAAAGACTCTTTCACCTCTTGGTCTCACAATTCCGTCACCTCTCCCTTTGCAATGCTGACATGAATAGAAAAGAAATGGTTCGAATACCATCTACTCACCAAAAACACTGTGAAAAGACTTTTATGAGAAGGTTTTATTGAAAATATAAGGAAACATAGGGAAAGCAACAAGGATTTTGGGGTTTGAACCCTACGACATAGAAGAGAAGGACCATAGAAAACGATTAGAAATTGAAAACGGATCAGTAGACCTAGTCTCCGAATCTATTCTAACTATCAACAAATTCCTAGACTTTTCGGCGGAATGGGCATTGTAATTCTTTCCACTTCTCGGGGTATAATGACAGACAGACCGAGAAGCTCGACTACAGGGAATCGGCAGAGACATTTTGTGTTCCATTATATTATAATTCACTAACAAAAAGAGGTGTATTTGTAATAGCACTCCCCTTATCATTAATTGAGACTTTGAACCGGGTTTCATCTGGAATGAAAGAACAAAAAAGGATTTCTGCCGATTTCATTACTGAATAACTTACCAATGGTATCTTTGGGGTTTGTTTAGATAATGAGTGAGGAACCCATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTGATACATATACAAGGTCATATAGAGTCAAAGTTGGAGTAAGTCAGTAGGGTGTTAGGATTCAACCAGAACCAGAGGGCGTATAATTTATAGACTACAAAGATTCGAATGATTAGGTGAAGTAAGTATTTGACTTGCAATATTCTTTTTTGCGGGGATACTCAAGCAAGTATTTTCTTAAGGGGATTCGGAATAAGGAATGACAAGTAAGGGCCTCCATTCGGCTAATTTGTTTCAATCCGAGACATAACCAAAGACAAGGAGAATCTTTATCAAAAAGGACCCCTAAAGTAAAGCCCACCCACGATATACACATAAAAAGAAATGAAAGGATCCAGTTTGACATGAAATGGGTATATCCATATATCTCTCACTTCAATCAATTTATGAGATGAGAAAGGCAAAACCCATAGCAAGAATCGGTTCACGGAGAAATGGACGTATTAGCTCACGGACAAAGTACGCGTAAAATACCAAAGGGAAAGGGCCTTATTCATCTTCAAGCAAGTTTAAACAATACAATTGTGACTGTTACAGATGTACGGGGGCGGGGAATTCCTTGGTCCTACGCTGGTACTTGTGGATTCAAAGGGCCAAGACAAGAAGAGGGACGCCAATTGCTACTCAAACCACAGCTGGAAATGCTAGTCGGGCAGGAGCAGATCAAGGTATGCAACGAGCAAAAGTCATGATAAAAGGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATTCGTAGAAAAGCGGTATACTATTGA

mRNA sequence

ATGGCCCGGCCCGGCCCAAACCTAACGAAAGAGGAAGAAGTGATCAGAGCTGTAATTGTACGTACTGAACTCAAACGAGAAACAATAATGAGTGAGGAACCCATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTGATACATATACAAGGTCATATAGAGTCAAAGTTGGAATGTACGGGGGCGGGGAATTCCTTGGTCCTACGCTGGTACTTGTGGATTCAAAGGGCCAAGACAAGAAGAGGGACGCCAATTGCTACTCAAACCACAGCTGGAAATGCTAGTCGGGCAGGAGCAGATCAAGGTATGCAACGAGCAAAAGTCATGATAAAAGGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATTCGTAGAAAAGCGGTATACTATTGA

Coding sequence (CDS)

ATGGCCCGGCCCGGCCCAAACCTAACGAAAGAGGAAGAAGTGATCAGAGCTGTAATTGTACGTACTGAACTCAAACGAGAAACAATAATGAGTGAGGAACCCATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTGATACATATACAAGGTCATATAGAGTCAAAGTTGGAATGTACGGGGGCGGGGAATTCCTTGGTCCTACGCTGGTACTTGTGGATTCAAAGGGCCAAGACAAGAAGAGGGACGCCAATTGCTACTCAAACCACAGCTGGAAATGCTAGTCGGGCAGGAGCAGATCAAGGTATGCAACGAGCAAAAGTCATGATAAAAGGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATTCGTAGAAAAGCGGTATACTATTGA

Homology

[Close]

BLAST of CmoCh17G005170.1 vs. Swiss-Prot
Match: RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. Swiss-Prot
Match: RR11_GOSHI (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. Swiss-Prot
Match: RR11_CARPA (30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. Swiss-Prot
Match: RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. Swiss-Prot
Match: RR11_LOTJA (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-15
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           +I   +IH+Q    + +         V+ W          TRRGTP A QT AGNA R  
Sbjct: 24  KIPKGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. TrEMBL
Match: A0A0U1XGK1_SAPMU (30S ribosomal protein S11, chloroplastic OS=Sapindus mukorossi GN=rps11 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.0e-14
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RISKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. TrEMBL
Match: A0A088DAA9_CITAU (30S ribosomal protein S11, chloroplastic OS=Citrus aurantiifolia GN=rps11 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. TrEMBL
Match: A0A159BNW5_9ROSI (Ribosomal protein S11 OS=Citrus platymamma GN=rps11 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. TrEMBL
Match: W8EED8_AZAIN (30S ribosomal protein S11, chloroplastic OS=Azadirachta indica GN=rps11 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 26  RIPKGVIHVQTSFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 85

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 86  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 116

[Close]

BLAST of CmoCh17G005170.1 vs. TrEMBL
Match: A0A0K0LVB8_CHAFS (Ribosomal protein S11 OS=Chamaecrista fasciculata GN=rps11 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           +I   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  KIPKGVIHVQASFNNTIVTVTDVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. TAIR10
Match: ATCG00750.1 (ATCG00750.1 ribosomal protein S11)

HSP 1 Score: 80.5 bits (197), Expect = 8.6e-16
Identity = 47/91 (51.65%), Postives = 54/91 (59.34%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+V IKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVRIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. NCBI nr
Match: gi|725797367|ref|YP_009107009.1| (ribosomal protein S11 (chloroplast) [Sapindus mukorossi])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RISKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. NCBI nr
Match: gi|114329688|ref|YP_740509.1| (ribosomal protein S11 (chloroplast) [Citrus sinensis])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. NCBI nr
Match: gi|595789713|ref|YP_009019921.1| (ribosomal protein S11 (chloroplast) [Azadirachta indica])

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 26  RIPKGVIHVQTSFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 85

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 86  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 116

[Close]

BLAST of CmoCh17G005170.1 vs. NCBI nr
Match: gi|748991622|gb|AJE72056.1| (ribosomal protein S11 (plastid) [Chamaecrista fasciculata])

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-13
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           +I   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  KIPKGVIHVQASFNNTIVTVTDVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]

BLAST of CmoCh17G005170.1 vs. NCBI nr
Match: gi|757609259|ref|WP_042855038.1| (30S ribosomal protein S11 [Staphylococcus aureus])

HSP 1 Score: 82.8 bits (203), Expect = 4.9e-13
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

The following BLAST results are available for this feature:

BLAST of CmoCh17G005170.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR11_CITSI	1.1e-15	53.85	30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1	[more]
RR11_GOSHI	3.1e-15	52.75	30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum GN=rps11 PE=3 SV=...	[more]
RR11_CARPA	3.1e-15	52.75	30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1	[more]
RR11_GOSBA	3.1e-15	52.75	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 S...	[more]
RR11_LOTJA	5.3e-15	51.65	30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1	[more]

BLAST of CmoCh17G005170.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0U1XGK1_SAPMU	9.0e-14	53.85	30S ribosomal protein S11, chloroplastic OS=Sapindus mukorossi GN=rps11 PE=3 SV=...	[more]
A0A088DAA9_CITAU	1.2e-13	53.85	30S ribosomal protein S11, chloroplastic OS=Citrus aurantiifolia GN=rps11 PE=3 S...	[more]
A0A159BNW5_9ROSI	1.2e-13	53.85	Ribosomal protein S11 OS=Citrus platymamma GN=rps11 PE=4 SV=1	[more]
W8EED8_AZAIN	2.0e-13	53.85	30S ribosomal protein S11, chloroplastic OS=Azadirachta indica GN=rps11 PE=3 SV=...	[more]
A0A0K0LVB8_CHAFS	2.6e-13	52.75	Ribosomal protein S11 OS=Chamaecrista fasciculata GN=rps11 PE=3 SV=1	[more]

BLAST of CmoCh17G005170.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00750.1	8.6e-16	51.65	ATCG00750.1 ribosomal protein S11	[more]

BLAST of CmoCh17G005170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|725797367\|ref\|YP_009107009.1\|	1.3e-13	53.85	ribosomal protein S11 (chloroplast) [Sapindus mukorossi]	[more]
gi\|114329688\|ref\|YP_740509.1\|	1.7e-13	53.85	ribosomal protein S11 (chloroplast) [Citrus sinensis]	[more]
gi\|595789713\|ref\|YP_009019921.1\|	2.9e-13	53.85	ribosomal protein S11 (chloroplast) [Azadirachta indica]	[more]
gi\|748991622\|gb\|AJE72056.1\|	3.8e-13	52.75	ribosomal protein S11 (plastid) [Chamaecrista fasciculata]	[more]
gi\|757609259\|ref\|WP_042855038.1\|	4.9e-13	52.75	30S ribosomal protein S11 [Staphylococcus aureus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001971	Ribosomal_S11

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh17G005170	CmoCh17G005170	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh17G005170.1	CmoCh17G005170.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G005170.1.CDS.3	CmoCh17G005170.1.CDS.3	CDS
CmoCh17G005170.1.CDS.2	CmoCh17G005170.1.CDS.2	CDS
CmoCh17G005170.1.CDS.1	CmoCh17G005170.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G005170.1.exon.3	CmoCh17G005170.1.exon.3	exon
CmoCh17G005170.1.exon.2	CmoCh17G005170.1.exon.2	exon
CmoCh17G005170.1.exon.1	CmoCh17G005170.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	GENE3D	G3DSA:3.30.420.80		coord: 77..128 score: 5.4
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 79..129 score: 3.8
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 77..128 score: 3.6