CmoCh17G005170 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G005170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S11, chloroplastic
LocationCmo_Chr17 : 4993052 .. 4995130 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCGGCCCGGCCCAAACCTAACGAAAGAGGAAGAAGTGATCAGAGCTGTAATTGTACGTACTGAACTCAAACGAGAAACAGTATGATAATACGATATGATGACAATGCTTTGTTATTGATCAAGAAGGAAATGCAAAAGGAACTCGAATTTGTGGTGCGATTGCCCGAGAATAGAGACAGTGAAATTTCACTAAAAGAATTTCATTAGCACCTTCAGTCTTATAAGATGAGATGAGACCGTGGGTTAGTTAGAGTAGTTGAATGAAATGAATTAGTGTGTATAACGTATATACCTTTTCAAATGAATAACTATTTATGAATCATGCCAAGCCAAGCATGTTGATTAGACCACAATGAAAAGTAACCAAGAATTAGCCTTTCTCATGGGTAAGGACACTATTGCTAACAGAATAACCCCTCTCCCTACCGATCGAGCTCTTTCACTCTCCTGTATAAACACTCAAAAAAACAAGAATGATCCTATCCTCTGTCTATTTTTAGGGATCAAATTTAGTAAAGGTAATTCATAAGTCAATCCTCAAGAAGAATCAATTTGACTTAACTGTCAGGAAAGACGAAAGATTCCTTCTATCTCTCCCTTATTTTTTGGGATAAAAGAGAGTCAAGGTAATGAAACAGTCAATCCTCTCGAAGAATCAATTCGACTTAACTGTAAGGAAAGACGAAAGATTCCTTCAAAGACTCTTTCACCTCTTGGTCTCACAATTCCGTCACCTCTCCCTTTGCAATGCTGACATGAATAGAAAAGAAATGGTTCGAATACCATCTACTCACCAAAAACACTGTGAAAAGACTTTTATGAGAAGGTTTTATTGAAAATATAAGGAAACATAGGGAAAGCAACAAGGATTTTGGGGTTTGAACCCTACGACATAGAAGAGAAGGACCATAGAAAACGATTAGAAATTGAAAACGGATCAGTAGACCTAGTCTCCGAATCTATTCTAACTATCAACAAATTCCTAGACTTTTCGGCGGAATGGGCATTGTAATTCTTTCCACTTCTCGGGGTATAATGACAGACAGACCGAGAAGCTCGACTACAGGGAATCGGCAGAGACATTTTGTGTTCCATTATATTATAATTCACTAACAAAAAGAGGTGTATTTGTAATAGCACTCCCCTTATCATTAATTGAGACTTTGAACCGGGTTTCATCTGGAATGAAAGAACAAAAAAGGATTTCTGCCGATTTCATTACTGAATAACTTACCAATGGTATCTTTGGGGTTTGTTTAGATAATGAGTGAGGAACCCATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTGATACATATACAAGGTCATATAGAGTCAAAGTTGGAGTAAGTCAGTAGGGTGTTAGGATTCAACCAGAACCAGAGGGCGTATAATTTATAGACTACAAAGATTCGAATGATTAGGTGAAGTAAGTATTTGACTTGCAATATTCTTTTTTGCGGGGATACTCAAGCAAGTATTTTCTTAAGGGGATTCGGAATAAGGAATGACAAGTAAGGGCCTCCATTCGGCTAATTTGTTTCAATCCGAGACATAACCAAAGACAAGGAGAATCTTTATCAAAAAGGACCCCTAAAGTAAAGCCCACCCACGATATACACATAAAAAGAAATGAAAGGATCCAGTTTGACATGAAATGGGTATATCCATATATCTCTCACTTCAATCAATTTATGAGATGAGAAAGGCAAAACCCATAGCAAGAATCGGTTCACGGAGAAATGGACGTATTAGCTCACGGACAAAGTACGCGTAAAATACCAAAGGGAAAGGGCCTTATTCATCTTCAAGCAAGTTTAAACAATACAATTGTGACTGTTACAGATGTACGGGGGCGGGGAATTCCTTGGTCCTACGCTGGTACTTGTGGATTCAAAGGGCCAAGACAAGAAGAGGGACGCCAATTGCTACTCAAACCACAGCTGGAAATGCTAGTCGGGCAGGAGCAGATCAAGGTATGCAACGAGCAAAAGTCATGATAAAAGGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATTCGTAGAAAAGCGGTATACTATTGA

mRNA sequence

ATGGCCCGGCCCGGCCCAAACCTAACGAAAGAGGAAGAAGTGATCAGAGCTGTAATTGTACGTACTGAACTCAAACGAGAAACAATAATGAGTGAGGAACCCATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTGATACATATACAAGGTCATATAGAGTCAAAGTTGGAATGTACGGGGGCGGGGAATTCCTTGGTCCTACGCTGGTACTTGTGGATTCAAAGGGCCAAGACAAGAAGAGGGACGCCAATTGCTACTCAAACCACAGCTGGAAATGCTAGTCGGGCAGGAGCAGATCAAGGTATGCAACGAGCAAAAGTCATGATAAAAGGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATTCGTAGAAAAGCGGTATACTATTGA

Coding sequence (CDS)

ATGGCCCGGCCCGGCCCAAACCTAACGAAAGAGGAAGAAGTGATCAGAGCTGTAATTGTACGTACTGAACTCAAACGAGAAACAATAATGAGTGAGGAACCCATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTGATACATATACAAGGTCATATAGAGTCAAAGTTGGAATGTACGGGGGCGGGGAATTCCTTGGTCCTACGCTGGTACTTGTGGATTCAAAGGGCCAAGACAAGAAGAGGGACGCCAATTGCTACTCAAACCACAGCTGGAAATGCTAGTCGGGCAGGAGCAGATCAAGGTATGCAACGAGCAAAAGTCATGATAAAAGGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATTCGTAGAAAAGCGGTATACTATTGA
Homology
[Close]
BLAST of CmoCh17G005170 vs. Swiss-Prot
Match: RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. Swiss-Prot
Match: RR11_GOSHI (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. Swiss-Prot
Match: RR11_CARPA (30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. Swiss-Prot
Match: RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. Swiss-Prot
Match: RR11_LOTJA (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-15
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           +I   +IH+Q    + +         V+ W          TRRGTP A QT AGNA R  
Sbjct: 24  KIPKGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. TrEMBL
Match: A0A0U1XGK1_SAPMU (30S ribosomal protein S11, chloroplastic OS=Sapindus mukorossi GN=rps11 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.0e-14
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RISKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. TrEMBL
Match: A0A088DAA9_CITAU (30S ribosomal protein S11, chloroplastic OS=Citrus aurantiifolia GN=rps11 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. TrEMBL
Match: A0A159BNW5_9ROSI (Ribosomal protein S11 OS=Citrus platymamma GN=rps11 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. TrEMBL
Match: W8EED8_AZAIN (30S ribosomal protein S11, chloroplastic OS=Azadirachta indica GN=rps11 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 26  RIPKGVIHVQTSFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 85

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 86  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 116

[Close]
BLAST of CmoCh17G005170 vs. TrEMBL
Match: A0A0K0LVB8_CHAFS (Ribosomal protein S11 OS=Chamaecrista fasciculata GN=rps11 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           +I   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  KIPKGVIHVQASFNNTIVTVTDVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. TAIR10
Match: ATCG00750.1 (ATCG00750.1 ribosomal protein S11)

HSP 1 Score: 80.5 bits (197), Expect = 8.6e-16
Identity = 47/91 (51.65%), Postives = 54/91 (59.34%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+V IKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVRIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. NCBI nr
Match: gi|725797367|ref|YP_009107009.1| (ribosomal protein S11 (chloroplast) [Sapindus mukorossi])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RISKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. NCBI nr
Match: gi|114329688|ref|YP_740509.1| (ribosomal protein S11 (chloroplast) [Citrus sinensis])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. NCBI nr
Match: gi|595789713|ref|YP_009019921.1| (ribosomal protein S11 (chloroplast) [Azadirachta indica])

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 26  RIPKGVIHVQTSFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAV 85

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 86  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 116

[Close]
BLAST of CmoCh17G005170 vs. NCBI nr
Match: gi|748991622|gb|AJE72056.1| (ribosomal protein S11 (plastid) [Chamaecrista fasciculata])

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-13
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           +I   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  KIPKGVIHVQASFNNTIVTVTDVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
           ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  ADQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

[Close]
BLAST of CmoCh17G005170 vs. NCBI nr
Match: gi|757609259|ref|WP_042855038.1| (30S ribosomal protein S11 [Staphylococcus aureus])

HSP 1 Score: 82.8 bits (203), Expect = 4.9e-13
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 42  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAG 101
           RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA 
Sbjct: 24  RIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAV 83

Query: 102 ADQGMQRAKVMIKGPGLGRDAALRAIRRKAV 131
            DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Sbjct: 84  VDQGMQRAEVMIKGPGLGRDAALRAIRRSGI 114

The following BLAST results are available for this feature:
BLAST of CmoCh17G005170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR11_CITSI1.1e-1553.8530S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1[more]
RR11_GOSHI3.1e-1552.7530S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum GN=rps11 PE=3 SV=... [more]
RR11_CARPA3.1e-1552.7530S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1[more]
RR11_GOSBA3.1e-1552.7530S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 S... [more]
RR11_LOTJA5.3e-1551.6530S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1[more]
BLAST of CmoCh17G005170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0U1XGK1_SAPMU9.0e-1453.8530S ribosomal protein S11, chloroplastic OS=Sapindus mukorossi GN=rps11 PE=3 SV=... [more]
A0A088DAA9_CITAU1.2e-1353.8530S ribosomal protein S11, chloroplastic OS=Citrus aurantiifolia GN=rps11 PE=3 S... [more]
A0A159BNW5_9ROSI1.2e-1353.85Ribosomal protein S11 OS=Citrus platymamma GN=rps11 PE=4 SV=1[more]
W8EED8_AZAIN2.0e-1353.8530S ribosomal protein S11, chloroplastic OS=Azadirachta indica GN=rps11 PE=3 SV=... [more]
A0A0K0LVB8_CHAFS2.6e-1352.75Ribosomal protein S11 OS=Chamaecrista fasciculata GN=rps11 PE=3 SV=1[more]
BLAST of CmoCh17G005170 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00750.18.6e-1651.65ATCG00750.1 ribosomal protein S11[more]
BLAST of CmoCh17G005170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|725797367|ref|YP_009107009.1|1.3e-1353.85ribosomal protein S11 (chloroplast) [Sapindus mukorossi][more]
gi|114329688|ref|YP_740509.1|1.7e-1353.85ribosomal protein S11 (chloroplast) [Citrus sinensis][more]
gi|595789713|ref|YP_009019921.1|2.9e-1353.85ribosomal protein S11 (chloroplast) [Azadirachta indica][more]
gi|748991622|gb|AJE72056.1|3.8e-1352.75ribosomal protein S11 (plastid) [Chamaecrista fasciculata][more]
gi|757609259|ref|WP_042855038.1|4.9e-1352.7530S ribosomal protein S11 [Staphylococcus aureus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G005170.1CmoCh17G005170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11GENE3DG3DSA:3.30.420.80coord: 77..128
score: 5.4
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 79..129
score: 3.8
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 77..128
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G005170Melon (DHL92) v3.5.1cmomeB306
CmoCh17G005170Watermelon (Charleston Gray)cmowcgB325
CmoCh17G005170Watermelon (97103) v1cmowmB346
CmoCh17G005170Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G005170Cucurbita pepo (Zucchini)cmocpeB344
CmoCh17G005170Cucurbita pepo (Zucchini)cmocpeB354
CmoCh17G005170Bottle gourd (USVL1VR-Ls)cmolsiB320
CmoCh17G005170Melon (DHL92) v3.6.1cmomedB351
CmoCh17G005170Silver-seed gourdcarcmoB0113
CmoCh17G005170Silver-seed gourdcarcmoB0117
CmoCh17G005170Watermelon (97103) v2cmowmbB361
CmoCh17G005170Wax gourdcmowgoB0455
CmoCh17G005170Cucurbita moschata (Rifu)cmocmoB313
CmoCh17G005170Cucurbita moschata (Rifu)cmocmoB323
CmoCh17G005170Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G005170Cucurbita maxima (Rimu)cmacmoB889
CmoCh17G005170Cucurbita maxima (Rimu)cmacmoB900