CmoCh17G001280.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G001280.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr17 : 739525 .. 742166 (+)
Sequence length	504

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCATCTTCACCATTTCCCCCAACCAAATGGGTCACCGCTCTCACCTCGTTCAAGCAAAAGGAAAAGAAGGGAACAGAGGAAAGCAGGAAAGACTATTCCTTTAAACTGTCTGTAAATCCCATAAAAAGCCTTCAATGTACGAAGAAACTATAATCACTCTTCCTTTACAAATAATGTAGACTGATGTTCTTGGTTACGGCTATTAATCCTAAACAAATCAAGTCTAAACATGAATATGAAATTGAAATCACATTGAGCTCATTCTAGAAATTCTGTTGCAATAATTTAATGCGAGAACAACAGACCAGGCAAATTAAACAAATAAACAAGTAAAGGTAGTAATTTAAAATTGAAATTCATTCCAATATATCTACCCAACTATATTTCACATACCTTGAAAACAAAACGGGTGCATTTGTAACATAATATCAAAGATTCTCTGATGTTAAATAGAAGCACATAAGACATCTACCTGAGAGCTTTGTCCACCTATCAAGTCCTCAATAACCATTTCTTGCAACAATCAAATAATTAGGGGAAATTTTACTTTTATCACCTATTCTAAACTAAATGAATCAATTTGAATATTTAACTTCCAATTTGCTCAGTTTCTTTGGGATCGTTGGAAATCCTTGTTTGGTGTGCGTGGTGCTCAGGGACAGGATGGTTGCTTGTTGTTGAGGAGGTGCTTTTGAATCCTCTATTAAGGAAAGAGGTAAAGTCTTGTGGCAAACTAGCTTCTTTGCTCTTTTGTGGGATATTTGGTTAGAAAAAAACACAACAGAAATTGTGAGGAGTTGAGAGCGGGTGAGGTGGTTAGATTTAAAGCCTTCTTTTAGGTTTCGGTCACTATGCCTGATCTTGGCCTTGTTCTTTTGGATTGGAGACATTTTTAAAAATTTGTTTAGGCTCGTTTTTTGTATGCCTATGTATTCTCTCATTTTCTCAAAGAAAGCTCAATTTCTTACCAAAAAAAAGAAAAAACCAACTAGTTAAGTTACCCCATTTTGTGTCGTGTGAAATCCCACATCGGTTGGAGAGGAAAACGAAACATTCTTTATAAAAGTGTGAAAACTTCTACCTATAGAGGTAACGTGAGGCTGACATCGATACGTAACAGGCAAAAACGGACACGCAGTGTGTCCTCACAATATCATAGCCAGGCACCGGCCAATGTGCCAACCAAGATGATGGGCCACCAAAGGGGGTGGATTGTGAGATCCCACATCCGTTGGAGAGGGGAACGAAACATTATTTATAAGGGTATGGAAAACTCTCCCCAATAGACACATTTTAAAACCCTGAGGTTAATGGCGATAAACAAGCCAAAGCTGATAATATCTACTAGCGGTGGGCTTGGGTTGTTACATGAAGAGATAATACTAATTTTGACAACGTTTTGGTTGTGAGGACAACTAAAGTCCCAAGATAAGAAGAAGATTGTAGGTATATAGGTAAGAATAACTATTTCCATTGGCATGATCATCCTTAACAAATGGTGAGAAAGGCATACCCCAAACTTAAGCATGTCGATTAAATCCTTCGAATCTAAACATGTGGATAGTGATGAGCCTCAATGACATAGTTACGTGAAGATCAGTGATTCAGCTATATAAGACATGTGGTGTGCTTGAAGAAAGGCTCAGTGGTCCTCCGTTTGAAGATAACGTGTATAAATGGGACAATTATCTCCAATGCTATGAGATAATTTTAGTGAAGTCAAAAGCAAAGTCATGAAAGTTTATATTCAAAAGTGGACAATACTATGTCAGTCTGAAATTATGGAGTGGTTCATTGTTCTTAAGAATAGTTCTTATGAATGAAAAATGTTATTATGCAAGTATGTAATCTTCTAATTGTATTAAAGAAGAACTCTTTCGTTGGGCAATTTTCAAACTAAGTGTAGTTTTGAAGGGGGTTTAATGTATGTACGAAACTTAAACTTCATCATCAGATTCAAAGCGGGATGCAAAAGAGGAATGGAGATGGCCTCAACCCACCCTCAATTAAAGTAGCTAAGAAAGTGCTAATTTCTTTTCAAAAACCAAATGACTTGAAACTAATCAAATCCAGGTATCAAACCTAAACTCTCAATAGAAATTCGCTCCAAGGCATCTACCCGGCAAATCGGTAAAATCCAAAACAGCCTAGCACAAAGCATGAATCTCGAAAGTCAATAAAAATAATCAAATCCCTAGCAGAAATCCCCGGTCAAGAAGTCTAATACATCCCAAGCTAATTCACCCCTTAATTCGCAGAAAAGACGAAATCAAGATAGAAAAGCAGTAAATCCCGTTATTAGTGGAATGATATAAAACAGGTAATTGGCCATGGATTAAACTATAAGATAATGGGGGAGAAAATACAGACCTTCGGATCTTGTTGCCCTTGCCGACCTGATACATCCCCCAAGAAAACGCACCAAATGCAGTAAGGAAAATCGCCATAGCGCTAGGGCCTTTGGTGGGAATCCGGCGAGCATAGCGAACCGGAGCGAATCCACCCGGCGGTGGCCCGTCCTGGAGGATCGGCATGTCTTTGACGCTGGCCATGCCAGGCTTCTTCCGAATCGCGGCCTCCGTCATCTCAGAGAGCTGCTTCGACGATCAAGTGAACGAATCAAGAGCTGGCTGTAA

mRNA sequence

ATGACATCATCTTCACCATTTCCCCCAACCAAATGGGTCACCGCTCTCACCTCGTTCAAGCAAAAGGAAAAGAAGGGAACAGAGGAAAGCAGGAAAGACTATTCCTTTAAACTGTCTATTCAAAGCGGGATGCAAAAGAGGAATGGAGATGGCCTCAACCCACCCTCAATTAAAGTAGCTAAGAAAGTGCTAATTTCTTTTCAAAAACCAAATGACTTGAAACTAATCAAATCCAGACCTTCGGATCTTGTTGCCCTTGCCGACCTGATACATCCCCCAAGAAAACGCACCAAATGCAGTAAGGAAAATCGCCATAGCGCTAGGGCCTTTGGTGGGAATCCGGCGAGCATAGCGAACCGGAGCGAATCCACCCGGCGGTGGCCCGTCCTGGAGGATCGGCATGTCTTTGACGCTGGCCATGCCAGGCTTCTTCCGAATCGCGGCCTCCGTCATCTCAGAGAGCTGCTTCGACGATCAAGTGAACGAATCAAGAGCTGGCTGTAA

Coding sequence (CDS)

ATGACATCATCTTCACCATTTCCCCCAACCAAATGGGTCACCGCTCTCACCTCGTTCAAGCAAAAGGAAAAGAAGGGAACAGAGGAAAGCAGGAAAGACTATTCCTTTAAACTGTCTATTCAAAGCGGGATGCAAAAGAGGAATGGAGATGGCCTCAACCCACCCTCAATTAAAGTAGCTAAGAAAGTGCTAATTTCTTTTCAAAAACCAAATGACTTGAAACTAATCAAATCCAGACCTTCGGATCTTGTTGCCCTTGCCGACCTGATACATCCCCCAAGAAAACGCACCAAATGCAGTAAGGAAAATCGCCATAGCGCTAGGGCCTTTGGTGGGAATCCGGCGAGCATAGCGAACCGGAGCGAATCCACCCGGCGGTGGCCCGTCCTGGAGGATCGGCATGTCTTTGACGCTGGCCATGCCAGGCTTCTTCCGAATCGCGGCCTCCGTCATCTCAGAGAGCTGCTTCGACGATCAAGTGAACGAATCAAGAGCTGGCTGTAA

Homology

[Close]

BLAST of CmoCh17G001280.1 vs. TrEMBL
Match: C4IZA8_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-12
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 75  LIKSRPSDLVALADLIHPPRKRTKCSKENRHSARAFGGNPASIANRSESTRRWPVLEDRH 134
           L   RP+DLV LADL+H   + T+  +E+   A   GG+PA  A+  E+ RR PVL  RH
Sbjct: 87  LFFERPADLVPLADLVHAICESTEGGEEDGGGAGPRGGDPAGEAHGRETARRRPVLHHRH 146

Query: 135 VFDAGHARLLPNRGLRHLRELLR 158
           + DAGH RL+P++GLRHLR  +R
Sbjct: 147 LLDAGHPRLVPHQGLRHLRSRIR 169

[Close]

BLAST of CmoCh17G001280.1 vs. NCBI nr
Match: gi|238006446|gb|ACR34258.1| (unknown [Zea mays])

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 75  LIKSRPSDLVALADLIHPPRKRTKCSKENRHSARAFGGNPASIANRSESTRRWPVLEDRH 134
           L   RP+DLV LADL+H   + T+  +E+   A   GG+PA  A+  E+ RR PVL  RH
Sbjct: 87  LFFERPADLVPLADLVHAICESTEGGEEDGGGAGPRGGDPAGEAHGRETARRRPVLHHRH 146

Query: 135 VFDAGHARLLPNRGLRHLRELLR 158
           + DAGH RL+P++GLRHLR  +R
Sbjct: 147 LLDAGHPRLVPHQGLRHLRSRIR 169

The following BLAST results are available for this feature:

BLAST of CmoCh17G001280.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G001280.1 vs. TrEMBL


Match Name	E-value	Identity	Description
C4IZA8_MAIZE	8.2e-12	49.40	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]

BLAST of CmoCh17G001280.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh17G001280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|238006446\|gb\|ACR34258.1\|	1.2e-11	49.40	unknown [Zea mays]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh17G001280	CmoCh17G001280	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh17G001280.1	CmoCh17G001280.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G001280.1.exon.1	CmoCh17G001280.1.exon.1	exon
CmoCh17G001280.1.exon.2	CmoCh17G001280.1.exon.2	exon
CmoCh17G001280.1.exon.3	CmoCh17G001280.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G001280.1.CDS.1	CmoCh17G001280.1.CDS.1	CDS
CmoCh17G001280.1.CDS.2	CmoCh17G001280.1.CDS.2	CDS
CmoCh17G001280.1.CDS.3	CmoCh17G001280.1.CDS.3	CDS