CmoCh17G001280 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G001280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr17 : 739525 .. 742166 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCATCTTCACCATTTCCCCCAACCAAATGGGTCACCGCTCTCACCTCGTTCAAGCAAAAGGAAAAGAAGGGAACAGAGGAAAGCAGGAAAGACTATTCCTTTAAACTGTCTGTAAATCCCATAAAAAGCCTTCAATGTACGAAGAAACTATAATCACTCTTCCTTTACAAATAATGTAGACTGATGTTCTTGGTTACGGCTATTAATCCTAAACAAATCAAGTCTAAACATGAATATGAAATTGAAATCACATTGAGCTCATTCTAGAAATTCTGTTGCAATAATTTAATGCGAGAACAACAGACCAGGCAAATTAAACAAATAAACAAGTAAAGGTAGTAATTTAAAATTGAAATTCATTCCAATATATCTACCCAACTATATTTCACATACCTTGAAAACAAAACGGGTGCATTTGTAACATAATATCAAAGATTCTCTGATGTTAAATAGAAGCACATAAGACATCTACCTGAGAGCTTTGTCCACCTATCAAGTCCTCAATAACCATTTCTTGCAACAATCAAATAATTAGGGGAAATTTTACTTTTATCACCTATTCTAAACTAAATGAATCAATTTGAATATTTAACTTCCAATTTGCTCAGTTTCTTTGGGATCGTTGGAAATCCTTGTTTGGTGTGCGTGGTGCTCAGGGACAGGATGGTTGCTTGTTGTTGAGGAGGTGCTTTTGAATCCTCTATTAAGGAAAGAGGTAAAGTCTTGTGGCAAACTAGCTTCTTTGCTCTTTTGTGGGATATTTGGTTAGAAAAAAACACAACAGAAATTGTGAGGAGTTGAGAGCGGGTGAGGTGGTTAGATTTAAAGCCTTCTTTTAGGTTTCGGTCACTATGCCTGATCTTGGCCTTGTTCTTTTGGATTGGAGACATTTTTAAAAATTTGTTTAGGCTCGTTTTTTGTATGCCTATGTATTCTCTCATTTTCTCAAAGAAAGCTCAATTTCTTACCAAAAAAAAGAAAAAACCAACTAGTTAAGTTACCCCATTTTGTGTCGTGTGAAATCCCACATCGGTTGGAGAGGAAAACGAAACATTCTTTATAAAAGTGTGAAAACTTCTACCTATAGAGGTAACGTGAGGCTGACATCGATACGTAACAGGCAAAAACGGACACGCAGTGTGTCCTCACAATATCATAGCCAGGCACCGGCCAATGTGCCAACCAAGATGATGGGCCACCAAAGGGGGTGGATTGTGAGATCCCACATCCGTTGGAGAGGGGAACGAAACATTATTTATAAGGGTATGGAAAACTCTCCCCAATAGACACATTTTAAAACCCTGAGGTTAATGGCGATAAACAAGCCAAAGCTGATAATATCTACTAGCGGTGGGCTTGGGTTGTTACATGAAGAGATAATACTAATTTTGACAACGTTTTGGTTGTGAGGACAACTAAAGTCCCAAGATAAGAAGAAGATTGTAGGTATATAGGTAAGAATAACTATTTCCATTGGCATGATCATCCTTAACAAATGGTGAGAAAGGCATACCCCAAACTTAAGCATGTCGATTAAATCCTTCGAATCTAAACATGTGGATAGTGATGAGCCTCAATGACATAGTTACGTGAAGATCAGTGATTCAGCTATATAAGACATGTGGTGTGCTTGAAGAAAGGCTCAGTGGTCCTCCGTTTGAAGATAACGTGTATAAATGGGACAATTATCTCCAATGCTATGAGATAATTTTAGTGAAGTCAAAAGCAAAGTCATGAAAGTTTATATTCAAAAGTGGACAATACTATGTCAGTCTGAAATTATGGAGTGGTTCATTGTTCTTAAGAATAGTTCTTATGAATGAAAAATGTTATTATGCAAGTATGTAATCTTCTAATTGTATTAAAGAAGAACTCTTTCGTTGGGCAATTTTCAAACTAAGTGTAGTTTTGAAGGGGGTTTAATGTATGTACGAAACTTAAACTTCATCATCAGATTCAAAGCGGGATGCAAAAGAGGAATGGAGATGGCCTCAACCCACCCTCAATTAAAGTAGCTAAGAAAGTGCTAATTTCTTTTCAAAAACCAAATGACTTGAAACTAATCAAATCCAGGTATCAAACCTAAACTCTCAATAGAAATTCGCTCCAAGGCATCTACCCGGCAAATCGGTAAAATCCAAAACAGCCTAGCACAAAGCATGAATCTCGAAAGTCAATAAAAATAATCAAATCCCTAGCAGAAATCCCCGGTCAAGAAGTCTAATACATCCCAAGCTAATTCACCCCTTAATTCGCAGAAAAGACGAAATCAAGATAGAAAAGCAGTAAATCCCGTTATTAGTGGAATGATATAAAACAGGTAATTGGCCATGGATTAAACTATAAGATAATGGGGGAGAAAATACAGACCTTCGGATCTTGTTGCCCTTGCCGACCTGATACATCCCCCAAGAAAACGCACCAAATGCAGTAAGGAAAATCGCCATAGCGCTAGGGCCTTTGGTGGGAATCCGGCGAGCATAGCGAACCGGAGCGAATCCACCCGGCGGTGGCCCGTCCTGGAGGATCGGCATGTCTTTGACGCTGGCCATGCCAGGCTTCTTCCGAATCGCGGCCTCCGTCATCTCAGAGAGCTGCTTCGACGATCAAGTGAACGAATCAAGAGCTGGCTGTAA

mRNA sequence

ATGACATCATCTTCACCATTTCCCCCAACCAAATGGGTCACCGCTCTCACCTCGTTCAAGCAAAAGGAAAAGAAGGGAACAGAGGAAAGCAGGAAAGACTATTCCTTTAAACTGTCTATTCAAAGCGGGATGCAAAAGAGGAATGGAGATGGCCTCAACCCACCCTCAATTAAAGTAGCTAAGAAAGTGCTAATTTCTTTTCAAAAACCAAATGACTTGAAACTAATCAAATCCAGACCTTCGGATCTTGTTGCCCTTGCCGACCTGATACATCCCCCAAGAAAACGCACCAAATGCAGTAAGGAAAATCGCCATAGCGCTAGGGCCTTTGGTGGGAATCCGGCGAGCATAGCGAACCGGAGCGAATCCACCCGGCGGTGGCCCGTCCTGGAGGATCGGCATGTCTTTGACGCTGGCCATGCCAGGCTTCTTCCGAATCGCGGCCTCCGTCATCTCAGAGAGCTGCTTCGACGATCAAGTGAACGAATCAAGAGCTGGCTGTAA

Coding sequence (CDS)

ATGACATCATCTTCACCATTTCCCCCAACCAAATGGGTCACCGCTCTCACCTCGTTCAAGCAAAAGGAAAAGAAGGGAACAGAGGAAAGCAGGAAAGACTATTCCTTTAAACTGTCTATTCAAAGCGGGATGCAAAAGAGGAATGGAGATGGCCTCAACCCACCCTCAATTAAAGTAGCTAAGAAAGTGCTAATTTCTTTTCAAAAACCAAATGACTTGAAACTAATCAAATCCAGACCTTCGGATCTTGTTGCCCTTGCCGACCTGATACATCCCCCAAGAAAACGCACCAAATGCAGTAAGGAAAATCGCCATAGCGCTAGGGCCTTTGGTGGGAATCCGGCGAGCATAGCGAACCGGAGCGAATCCACCCGGCGGTGGCCCGTCCTGGAGGATCGGCATGTCTTTGACGCTGGCCATGCCAGGCTTCTTCCGAATCGCGGCCTCCGTCATCTCAGAGAGCTGCTTCGACGATCAAGTGAACGAATCAAGAGCTGGCTGTAA
Homology
[Close]
BLAST of CmoCh17G001280 vs. TrEMBL
Match: C4IZA8_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-12
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 75  LIKSRPSDLVALADLIHPPRKRTKCSKENRHSARAFGGNPASIANRSESTRRWPVLEDRH 134
           L   RP+DLV LADL+H   + T+  +E+   A   GG+PA  A+  E+ RR PVL  RH
Sbjct: 87  LFFERPADLVPLADLVHAICESTEGGEEDGGGAGPRGGDPAGEAHGRETARRRPVLHHRH 146

Query: 135 VFDAGHARLLPNRGLRHLRELLR 158
           + DAGH RL+P++GLRHLR  +R
Sbjct: 147 LLDAGHPRLVPHQGLRHLRSRIR 169

[Close]
BLAST of CmoCh17G001280 vs. NCBI nr
Match: gi|238006446|gb|ACR34258.1| (unknown [Zea mays])

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 75  LIKSRPSDLVALADLIHPPRKRTKCSKENRHSARAFGGNPASIANRSESTRRWPVLEDRH 134
           L   RP+DLV LADL+H   + T+  +E+   A   GG+PA  A+  E+ RR PVL  RH
Sbjct: 87  LFFERPADLVPLADLVHAICESTEGGEEDGGGAGPRGGDPAGEAHGRETARRRPVLHHRH 146

Query: 135 VFDAGHARLLPNRGLRHLRELLR 158
           + DAGH RL+P++GLRHLR  +R
Sbjct: 147 LLDAGHPRLVPHQGLRHLRSRIR 169

The following BLAST results are available for this feature:
BLAST of CmoCh17G001280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G001280 vs. TrEMBL
Match NameE-valueIdentityDescription
C4IZA8_MAIZE8.2e-1249.40Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
BLAST of CmoCh17G001280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G001280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|238006446|gb|ACR34258.1|1.2e-1149.40unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G001280.1CmoCh17G001280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G001280Cucumber (Gy14) v2cgybcmoB186
CmoCh17G001280Cucumber (Gy14) v2cgybcmoB317
CmoCh17G001280Melon (DHL92) v3.6.1cmomedB381
CmoCh17G001280Melon (DHL92) v3.6.1cmomedB385
CmoCh17G001280Silver-seed gourdcarcmoB0320
CmoCh17G001280Silver-seed gourdcarcmoB0329
CmoCh17G001280Silver-seed gourdcarcmoB1052
CmoCh17G001280Silver-seed gourdcarcmoB1285
CmoCh17G001280Silver-seed gourdcarcmoB1448
CmoCh17G001280Cucumber (Chinese Long) v3cmocucB0413
CmoCh17G001280Cucumber (Chinese Long) v3cmocucB0420
CmoCh17G001280Watermelon (97103) v2cmowmbB350
CmoCh17G001280Watermelon (97103) v2cmowmbB361
CmoCh17G001280Wax gourdcmowgoB0453
CmoCh17G001280Wax gourdcmowgoB0457
CmoCh17G001280Wax gourdcmowgoB0466
CmoCh17G001280Cucurbita moschata (Rifu)cmocmoB198
CmoCh17G001280Cucurbita moschata (Rifu)cmocmoB300
CmoCh17G001280Cucurbita moschata (Rifu)cmocmoB303
CmoCh17G001280Cucurbita moschata (Rifu)cmocmoB308
CmoCh17G001280Cucurbita moschata (Rifu)cmocmoB310
CmoCh17G001280Cucumber (Gy14) v1cgycmoB0708
CmoCh17G001280Cucumber (Gy14) v1cgycmoB1055
CmoCh17G001280Cucurbita maxima (Rimu)cmacmoB251
CmoCh17G001280Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G001280Cucurbita maxima (Rimu)cmacmoB505
CmoCh17G001280Cucurbita maxima (Rimu)cmacmoB590
CmoCh17G001280Cucurbita maxima (Rimu)cmacmoB809
CmoCh17G001280Cucurbita maxima (Rimu)cmacmoB887
CmoCh17G001280Wild cucumber (PI 183967)cmocpiB346
CmoCh17G001280Wild cucumber (PI 183967)cmocpiB353
CmoCh17G001280Cucumber (Chinese Long) v2cmocuB339
CmoCh17G001280Cucumber (Chinese Long) v2cmocuB346
CmoCh17G001280Melon (DHL92) v3.5.1cmomeB331
CmoCh17G001280Melon (DHL92) v3.5.1cmomeB336
CmoCh17G001280Watermelon (Charleston Gray)cmowcgB315
CmoCh17G001280Watermelon (Charleston Gray)cmowcgB325
CmoCh17G001280Watermelon (97103) v1cmowmB340
CmoCh17G001280Watermelon (97103) v1cmowmB353
CmoCh17G001280Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G001280Cucurbita pepo (Zucchini)cmocpeB351
CmoCh17G001280Cucurbita pepo (Zucchini)cmocpeB364
CmoCh17G001280Cucurbita pepo (Zucchini)cmocpeB369
CmoCh17G001280Cucurbita pepo (Zucchini)cmocpeB373
CmoCh17G001280Bottle gourd (USVL1VR-Ls)cmolsiB320
CmoCh17G001280Bottle gourd (USVL1VR-Ls)cmolsiB345