CmoCh16G012150.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G012150.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Glycine-rich protein-1
Location	Cmo_Chr16 : 8689585 .. 8690352 (+)
Sequence length	768

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCAGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCAAAAACTCCATCTCAAACAAGAACTGA

mRNA sequence

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCAGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCAAAAACTCCATCTCAAACAAGAACTGA

Coding sequence (CDS)

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCAGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCAAAAACTCCATCTCAAACAAGAACTGA

Homology

[Close]

BLAST of CmoCh16G012150.1 vs. Swiss-Prot
Match: GRP2_PHAVU (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 116/264 (43.94%), Postives = 130/264 (49.24%), Query Frame = 1


Query: 3   ITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGG 62
           I R+  L FL+L+ LG+ SA R LL  D     YG        G   G    SY    GG
Sbjct: 4   IHRLPSLVFLVLLALGVCSARRALLTLDAG---YGLGHGT---GGGYGGAAGSYGGGGGG 63

Query: 63  RSGGG-----------YGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGY 122
            SGGG           YG GS    G G G GG +G+GYG GGG+  GGGV+        
Sbjct: 64  GSGGGGGYAGEHGVVGYGGGSGGGQGGGVGYGGDQGAGYGGGGGSGGGGGVA-------- 123

Query: 123 GSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGY---- 182
                YGGG + G GY GG+ G    G  GGYG G +H IGYG   G+G G G GY    
Sbjct: 124 -----YGGGGERG-GYGGGQGG----GAGGGYGAGGEHGIGYGGGGGSGAGGGGGYNAGG 183

Query: 183 GDSHGYGNGGGV-DGGYGRGDGVGSHAGGSGI--GAGGGYGG---HAGGSGIGAGGAYGS 242
               GYG GGG   GG G GD  G + GG G   GAGGGYGG   H GG G G GG  G 
Sbjct: 184 AQGGGYGTGGGAGGGGGGGGDHGGGYGGGQGAGGGAGGGYGGGGEHGGGGGGGQGGGAGG 243

Query: 243 GGAHGGEHDNSKGSGEEGGYDGGY 246
           G   GGEH    G G+ GG  GGY
Sbjct: 244 GYGAGGEHGGGAGGGQGGGAGGGY 243

[Close]

BLAST of CmoCh16G012150.1 vs. Swiss-Prot
Match: GRP2_ORYSI (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 97/210 (46.19%), Postives = 116/210 (55.24%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MA T+ L L+ L+L+ +G+ ++ARTLL Y             P  G   G   E     Y
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGY------------GPGGGGGGGGGGEGGGGGY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG    GYG GS    G G GSGG  G GYG GGG   GGG     GG G GSGS YG G
Sbjct: 61  GG---SGYGSGSGY--GEGGGSGGAAGGGYGRGGGG--GGG-----GGEGGGSGSGYGSG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHG--YGNGGG 180
           +  G G   G +GGY +GG GG GQG     GYG  +G G+G G+G G +HG  YG+GGG
Sbjct: 121 QGSGYGAGVGGAGGYGSGGGGGGGQGGGAG-GYGQGSGYGSGYGSGAGGAHGGGYGSGGG 180

Query: 181 VDGGYGRGDGVGSHAG-GSGIGAGGGYGGH 208
             GG G+G G GS +G G G G+GGG G H
Sbjct: 181 GGGGGGQGGGSGSGSGSGYGSGSGGGNGHH 185

[Close]

BLAST of CmoCh16G012150.1 vs. Swiss-Prot
Match: GRP2_ORYSJ (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 97/210 (46.19%), Postives = 116/210 (55.24%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MA T+ L L+ L+L+ +G+ ++ARTLL Y             P  G   G   E     Y
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGY------------GPGGGGGGGGGGEGGGGGY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG    GYG GS    G G GSGG  G GYG GGG   GGG     GG G GSGS YG G
Sbjct: 61  GG---SGYGSGSGY--GEGGGSGGAAGGGYGRGGGG--GGG-----GGEGGGSGSGYGSG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHG--YGNGGG 180
           +  G G   G +GGY +GG GG GQG     GYG  +G G+G G+G G +HG  YG+GGG
Sbjct: 121 QGSGYGAGVGGAGGYGSGGGGGGGQGGGAG-GYGQGSGYGSGYGSGAGGAHGGGYGSGGG 180

Query: 181 VDGGYGRGDGVGSHAG-GSGIGAGGGYGGH 208
             GG G+G G GS +G G G G+GGG G H
Sbjct: 181 GGGGGGQGGGSGSGSGSGYGSGSGGGNGHH 185

[Close]

BLAST of CmoCh16G012150.1 vs. TrEMBL
Match: A0A0A0L1V3_CUCSA (Glycine-rich protein-1 OS=Cucumis sativus GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32
Identity = 140/255 (54.90%), Postives = 151/255 (59.22%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAI R LCL+FLL V LGLASA RTLLDYDPRT  YGYDRP+PR GYD GH DESYD AY
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S  G+G G SALGGSGY  GG    GYG+   +           G GYG+   YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHNDR----------GVGYGN---YGG- 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
              G G  GG   GY N G G YG      +G       G G+GNGY D H  GNG   D
Sbjct: 121 ---GYGGVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGSGGKGSGNGY-DDHSRGNGAR-D 180

Query: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG 240
             YG   G G        G   GY     GSG G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NSYGDSHGHG--------GRDSGY-----GSGGGVTGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALKNSISNKN 256
           YDGGYA+KNSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

[Close]

BLAST of CmoCh16G012150.1 vs. TrEMBL
Match: A0A0A0L1U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 143/279 (51.25%), Postives = 161/279 (57.71%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYD---PRTRHYGYDRP--NPREGYDSGHRDES 60
           MAI++ L   FLLLV LGLASAAR+LL YD    R+ +  YD P  NP+ GY+   RD  
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGY 60

Query: 61  Y------DNAYGGRSGGGYGDGS---SALGGSGYGSGGVRGSGYG----------NGGGN 120
           Y      D  YGG +GGGYG G+   S+LGGSGYGSGG  GSGYG          +GGG 
Sbjct: 61  YHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSGYGGVGNHEVGYGSGGGG 120

Query: 121 AYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGRSGGYENGGNG--GYGQGRDHDIGYG 180
            YG GV S +GG+GYGSG   GGG   G G  GGR  GY +GG G  GYG   DH +GYG
Sbjct: 121 GYGAGVGSDLGGSGYGSGG--GGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 180

Query: 181 SRNGNGNGNGNG-------YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGH 240
           S  G G G+G G       +G  +G G GGG   GYG   G G   GGSG G G GYGG 
Sbjct: 181 SGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGGSKGYG---GGSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG      YGSGG          GSGEEGGYDGGYA
Sbjct: 241 AHGSG------YGSGG--------GAGSGEEGGYDGGYA 260

[Close]

BLAST of CmoCh16G012150.1 vs. TrEMBL
Match: Q9ZWM2_CUCSA (Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.2e-23
Identity = 143/279 (51.25%), Postives = 161/279 (57.71%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYD---PRTRHYGYDRP--NPREGYDSGHRDES 60
           MAI++ L   FLLLV LGLASAAR+LL YD    R+ +  YD P  NP+ GY+   RD  
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGY 60

Query: 61  Y------DNAYGGRSGGGYGDGS---SALGGSGYGSGGVRGSGYG----------NGGGN 120
           Y      D  YGG +GGGYG G+   S+LGGSGYGSGG  GSGYG          +GGG 
Sbjct: 61  YHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSGYGGVGNHEVGYGSGGGG 120

Query: 121 AYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGRSGGYENGGNG--GYGQGRDHDIGYG 180
            YG GV S +GG+GYGSG   GGG   G G  GGR  GY +GG G  GYG   DH +GYG
Sbjct: 121 GYGAGVGSDLGGSGYGSGG--GGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 180

Query: 181 SRNGNGNGNGNG-------YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGH 240
           S  G G G+G G       +G  +G G GGG   GYG   G G   GGSG G G GYGG 
Sbjct: 181 SGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGGSKGYG---GGSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG      YGSGG          GSGEEGGYDGGYA
Sbjct: 241 AHGSG------YGSGG--------GAGSGEEGGYDGGYA 260

[Close]

BLAST of CmoCh16G012150.1 vs. TrEMBL
Match: A0A0A0L190_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 59/85 (69.41%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1  MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
          MAI+RVLC+ FLL VGLGLASA RTLLDYDPR R Y YDRP PR GYD  HRD+SYDN Y
Sbjct: 1  MAISRVLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDRPTPRVGYDPSHRDQSYDNVY 60

Query: 61 GGRSGGGYGDGSSALGGSGYGSGGV 86
          GG S  GYG G SALG       GV
Sbjct: 61 GGSSSRGYGAGDSALGAKEVEKKGV 85

[Close]

BLAST of CmoCh16G012150.1 vs. TrEMBL
Match: A0A0A0L3Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 123/272 (45.22%), Postives = 139/272 (51.10%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESY---- 60
           MAI R     FLLLV LGLASA R+LL YDP   H  YD  N + GY   H D+ Y    
Sbjct: 10  MAIFRTFSFGFLLLVSLGLASATRSLLTYDP-PHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  --DNAYGGRSGGGYGD-GSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGS 120
                YG  +G GYG  G       GY     R   YG   G  YG G  S +GG+GYG+
Sbjct: 70  GASGGYGAGAGSGYGGVGYEHDHHDGYERDHDRS--YGGSAGGGYGVGAGSSLGGSGYGN 129

Query: 121 GSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDI---GYGSRNGNGNGNGNG--YG 180
                   DHGVGY+        NGG+GGYG G   D+   GYGS NG  +G+GNG   G
Sbjct: 130 -------VDHGVGYS--------NGGSGGYGAGVGSDLGGSGYGSGNGGASGSGNGDLGG 189

Query: 181 DSHGYGNGGGVDGGY-GRGD-------------GVGSHAGGSGIGAGGGYGGHAGGSGIG 240
              GYG GG    GY GRGD             G   + GGSG+G G GY G A GSG G
Sbjct: 190 RGKGYGRGGVGGNGYGGRGDHGRVVGHDDVVYGGSKGYGGGSGVGGGAGYSGGASGSGYG 249

Query: 241 AGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYA 247
           +GG  GSG  +G       GSGEEGGYDGGYA
Sbjct: 250 SGGGAGSGSGYG-------GSGEEGGYDGGYA 256

[Close]

BLAST of CmoCh16G012150.1 vs. TAIR10
Match: AT5G46730.1 (AT5G46730.1 glycine-rich protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 111/255 (43.53%), Postives = 130/255 (50.98%), Query Frame = 1


Query: 11  FLLLVGLGLASA-ARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYG 70
           F L++G+ +  A +R LL+Y   +   G+       G  SG         YGG SGGGYG
Sbjct: 11  FFLILGVSICYATSRNLLNYGQASGGGGHGGGGGSGGVSSG--------GYGGESGGGYG 70

Query: 71  DGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHG---VG 130
            GS    G GYG       GY +GGG+ +GGG        GY SG+  GGG  +G    G
Sbjct: 71  GGSGEGAGGGYGG----AEGYASGGGSGHGGGGGGAASSGGYASGAGEGGGGGYGGAAGG 130

Query: 131 YAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNG-NGYGDSHGYGNGGGVDGGYGR 190
           +AGG  GG   GG   YG G +H  GYG+  G G G G +GYG    YG GGG  GG G 
Sbjct: 131 HAGGGGGGSGGGGGSAYGAGGEHASGYGNGAGEGGGAGASGYGGG-AYGGGGGHGGGGGG 190

Query: 191 GDGVGSHAGGSGIGAG--------------GGYGGHAGGSGIGAGGAYGSGGAHGGEHDN 247
           G   G+H GGSG G G              GGYGG  GG G G GGAYG GGAHGG +  
Sbjct: 191 GSAGGAH-GGSGYGGGEGGGAGGGGSHGGAGGYGG-GGGGGSGGGGAYGGGGAHGGGY-- 248

[Close]

BLAST of CmoCh16G012150.1 vs. NCBI nr
Match: gi|659096568|ref|XP_008449165.1| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 9.1e-40
Identity = 146/255 (57.25%), Postives = 158/255 (61.96%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAI R LCL+FLL VGLGLASA RTLLDYDPRTRHYGYDRP+PR GYD GHRDESYDNAY
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S  G+G G SALGGSGY  GG R  GYG+   N           G GYG+G  YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRRDYGYGDRNDNR----------GVGYGNGGGYGG- 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
                   GG   GY N G GGYG      +G       G G+ NGY D H +G GG  D
Sbjct: 121 -------VGGHGDGYGNNGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGR-D 180

Query: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG 240
            GY  GD  G     SG G+GG           G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NGY--GDSHGHEGRDSGYGSGG-----------GVSGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALKNSISNKN 256
           YDGGYA+KNSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

[Close]

BLAST of CmoCh16G012150.1 vs. NCBI nr
Match: gi|659095616|ref|XP_008448676.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 160/271 (59.04%), Postives = 177/271 (65.31%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MA+ R L LSFLLLVGLGLASAARTLLDYDPRTR+YGYDRP PR GYD  HRDESYDN Y
Sbjct: 1   MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSG-----GVR----GSGYGNGGGNAYGGGVSSGVGGAGY 120
           GG S  G+G G SALGGS +  G     G R    G GYGNGGG  YG      VGG G 
Sbjct: 61  GGSSSKGHGIGDSALGGSEHEGGRHYQYGGRNDDHGVGYGNGGG--YGS-----VGGHGD 120

Query: 121 GSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNG---NGNGYG 180
           G G+  GGG  HG GY G   GGY + G  G G G +   GYGS  G+G+G   NG GYG
Sbjct: 121 GYGNNGGGG--HGDGY-GNNGGGYGSVGGHGDGYGNNGG-GYGSVGGHGDGYGNNGGGYG 180

Query: 181 DSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAG----GSGIGAGGAYGSGGA 240
              G+G+G G +GG G GD  G   GGSG G+ GG G   G      G G+GG YG+GG 
Sbjct: 181 SVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGSSGGKGSGNGYGDSSHGYGSGG-YGNGGV 240

Query: 241 HGGEHDNSKGSGEEGGYDGGYALKNSISNKN 256
           H GE+ NSKGSGEEGGYDGGYA KNSIS +N
Sbjct: 241 HEGEYGNSKGSGEEGGYDGGYAAKNSISKEN 259

[Close]

BLAST of CmoCh16G012150.1 vs. NCBI nr
Match: gi|778688294|ref|XP_011652712.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 140/255 (54.90%), Postives = 151/255 (59.22%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAI R LCL+FLL V LGLASA RTLLDYDPRT  YGYDRP+PR GYD GH DESYD AY
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S  G+G G SALGGSGY  GG    GYG+   +           G GYG+   YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHNDR----------GVGYGN---YGG- 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
              G G  GG   GY N G G YG      +G       G G+GNGY D H  GNG   D
Sbjct: 121 ---GYGGVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGSGGKGSGNGY-DDHSRGNGAR-D 180

Query: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG 240
             YG   G G        G   GY     GSG G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NSYGDSHGHG--------GRDSGY-----GSGGGVTGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALKNSISNKN 256
           YDGGYA+KNSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

[Close]

BLAST of CmoCh16G012150.1 vs. NCBI nr
Match: gi|659096566|ref|XP_008449164.1| (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 8.9e-27
Identity = 151/301 (50.17%), Postives = 169/301 (56.15%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAI+R LC+SFLL V LGLASAARTLLDYDPRTR Y YD P PR GYD  HRD+SYDNAY
Sbjct: 1   MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGN---AYGGGVSSGVGGAGYGSGSRY 120
           GG S  GYG G SALGGSG   GG  G  YG GG N     G G  +   GAGYG+G  Y
Sbjct: 61  GGSSNRGYGVGDSALGGSGRYEGG-GGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAG--Y 120

Query: 121 GG-GEDHGVGYAGGRSGGYENGGNGGYG-QGRDHDIGYGSRNGNGNGNGNGYGDSH--GY 180
           GG  +D G GY     GG  +    GYG +  DH  GYG RN +      G  D    GY
Sbjct: 121 GGRNDDRGAGY-----GGRNDDRGAGYGRRNDDHGAGYGGRNDDRGAGYGGRNDDRGVGY 180

Query: 181 GNGGGVDGGYGRGDGVGSHAGG-----------------SGIGAGGGYGGHA---GGSGI 240
           GNGGG  G  G GDG G++ GG                  G G+G GY  H+   GG   
Sbjct: 181 GNGGGYGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGNGGKGSGNGYDDHSRGYGGHDN 240

Query: 241 GAGGAYGSGGA-------------------HGGEHDNSKGSGEEGGYDGGYALKNSISNK 256
           G G ++G GG                    HGGE+DNSKGSGE GG DGGYA+KNSIS +
Sbjct: 241 GYGDSHGHGGRDSGYGSGGGVSGGYGNGGVHGGEYDNSKGSGEGGGNDGGYAVKNSISKE 293

[Close]

BLAST of CmoCh16G012150.1 vs. NCBI nr
Match: gi|659095612|ref|XP_008448673.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 140/279 (50.18%), Postives = 158/279 (56.63%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRP-------NPREGYDSGHRD 60
           MAI++ L   FLLLV LGLASAAR+LL YD      GYD         NP+ GY+  H D
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLYYDMPPHRSGYDNNYDNHPVVNPKVGYEHDHHD 60

Query: 61  ESY------DNAYGGRSGGGYGDGS---SALGGSGYGSGGVRGSGYG----------NGG 120
             Y      D  YGG +GGGYG G    S+LGGSGYGSGG  GSGYG          +GG
Sbjct: 61  GYYHDRDHHDAPYGGGAGGGYGAGGGAGSSLGGSGYGSGGGGGSGYGGVGNHGVGYGSGG 120

Query: 121 GNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGRSGGYENGGNG--GYGQGRDHDIG 180
           G  YG GV S +GG+GYGSG   GGG   G G  GG   GY +GG G  GYG   DH +G
Sbjct: 121 GGGYGAGVGSDLGGSGYGSGG--GGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 180

Query: 181 YGSRNGNGNGNGNG-----YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGH 240
           YGS  G G G+G G     +G  +G G GGG  GGYG   G G+   GSG G G GYGG 
Sbjct: 181 YGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGA---GSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG G+GG  G+            GSGEEGGYDGGYA
Sbjct: 241 AHGSGYGSGGGAGA------------GSGEEGGYDGGYA 262

The following BLAST results are available for this feature:

BLAST of CmoCh16G012150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRP2_PHAVU	2.2e-09	43.94	Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris PE=2 SV=1	[more]
GRP2_ORYSI	1.7e-06	46.19	Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica GN=GRP...	[more]
GRP2_ORYSJ	1.7e-06	46.19	Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica GN=G...	[more]

BLAST of CmoCh16G012150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1V3_CUCSA	8.3e-32	54.90	Glycine-rich protein-1 OS=Cucumis sativus GN=Csa_3G011070 PE=4 SV=1	[more]
A0A0A0L1U7_CUCSA	2.4e-23	51.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1	[more]
Q9ZWM2_CUCSA	3.2e-23	51.25	Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1	[more]
A0A0A0L190_CUCSA	1.8e-18	69.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1	[more]
A0A0A0L3Y0_CUCSA	1.5e-12	45.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1	[more]

BLAST of CmoCh16G012150.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46730.1	2.1e-10	43.53	glycine-rich protein	[more]

BLAST of CmoCh16G012150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096568\|ref\|XP_008449165.1\|	9.1e-40	57.25	PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo]	[more]
gi\|659095616\|ref\|XP_008448676.1\|	2.6e-34	59.04	PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis ...	[more]
gi\|778688294\|ref\|XP_011652712.1\|	1.2e-31	54.90	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]	[more]
gi\|659096566\|ref\|XP_008449164.1\|	8.9e-27	50.17	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]	[more]
gi\|659095612\|ref\|XP_008448673.1\|	1.2e-23	50.18	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh16G012150	CmoCh16G012150	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012150.1	CmoCh16G012150.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012150.1.exon.1	CmoCh16G012150.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012150.1.CDS.1	CmoCh16G012150.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 201..219 score: 2.5E-7coord: 126..141 score: 2.5E-7coord: 4..20 score: 2.5E-7coord: 156..166 score: 2.