CmoCh16G012150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G012150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Glycine-rich protein-1
Location	Cmo_Chr16 : 8689585 .. 8690352 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCAGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCAAAAACTCCATCTCAAACAAGAACTGA

mRNA sequence

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCAGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCAAAAACTCCATCTCAAACAAGAACTGA

Coding sequence (CDS)

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCAGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCAAAAACTCCATCTCAAACAAGAACTGA

Homology

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BLAST of CmoCh16G012150 vs. Swiss-Prot
Match: GRP2_PHAVU (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 116/264 (43.94%), Postives = 130/264 (49.24%), Query Frame = 1


Query: 3   ITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGG 62
           I R+  L FL+L+ LG+ SA R LL  D     YG        G   G    SY    GG
Sbjct: 4   IHRLPSLVFLVLLALGVCSARRALLTLDAG---YGLGHGT---GGGYGGAAGSYGGGGGG 63

Query: 63  RSGGG-----------YGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGY 122
            SGGG           YG GS    G G G GG +G+GYG GGG+  GGGV+        
Sbjct: 64  GSGGGGGYAGEHGVVGYGGGSGGGQGGGVGYGGDQGAGYGGGGGSGGGGGVA-------- 123

Query: 123 GSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGY---- 182
                YGGG + G GY GG+ G    G  GGYG G +H IGYG   G+G G G GY    
Sbjct: 124 -----YGGGGERG-GYGGGQGG----GAGGGYGAGGEHGIGYGGGGGSGAGGGGGYNAGG 183

Query: 183 GDSHGYGNGGGV-DGGYGRGDGVGSHAGGSGI--GAGGGYGG---HAGGSGIGAGGAYGS 242
               GYG GGG   GG G GD  G + GG G   GAGGGYGG   H GG G G GG  G 
Sbjct: 184 AQGGGYGTGGGAGGGGGGGGDHGGGYGGGQGAGGGAGGGYGGGGEHGGGGGGGQGGGAGG 243

Query: 243 GGAHGGEHDNSKGSGEEGGYDGGY 246
           G   GGEH    G G+ GG  GGY
Sbjct: 244 GYGAGGEHGGGAGGGQGGGAGGGY 243

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BLAST of CmoCh16G012150 vs. Swiss-Prot
Match: GRP2_ORYSI (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 97/210 (46.19%), Postives = 116/210 (55.24%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MA T+ L L+ L+L+ +G+ ++ARTLL Y             P  G   G   E     Y
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGY------------GPGGGGGGGGGGEGGGGGY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG    GYG GS    G G GSGG  G GYG GGG   GGG     GG G GSGS YG G
Sbjct: 61  GG---SGYGSGSGY--GEGGGSGGAAGGGYGRGGGG--GGG-----GGEGGGSGSGYGSG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHG--YGNGGG 180
           +  G G   G +GGY +GG GG GQG     GYG  +G G+G G+G G +HG  YG+GGG
Sbjct: 121 QGSGYGAGVGGAGGYGSGGGGGGGQGGGAG-GYGQGSGYGSGYGSGAGGAHGGGYGSGGG 180

Query: 181 VDGGYGRGDGVGSHAG-GSGIGAGGGYGGH 208
             GG G+G G GS +G G G G+GGG G H
Sbjct: 181 GGGGGGQGGGSGSGSGSGYGSGSGGGNGHH 185

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BLAST of CmoCh16G012150 vs. Swiss-Prot
Match: GRP2_ORYSJ (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 97/210 (46.19%), Postives = 116/210 (55.24%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MA T+ L L+ L+L+ +G+ ++ARTLL Y             P  G   G   E     Y
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGY------------GPGGGGGGGGGGEGGGGGY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG    GYG GS    G G GSGG  G GYG GGG   GGG     GG G GSGS YG G
Sbjct: 61  GG---SGYGSGSGY--GEGGGSGGAAGGGYGRGGGG--GGG-----GGEGGGSGSGYGSG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHG--YGNGGG 180
           +  G G   G +GGY +GG GG GQG     GYG  +G G+G G+G G +HG  YG+GGG
Sbjct: 121 QGSGYGAGVGGAGGYGSGGGGGGGQGGGAG-GYGQGSGYGSGYGSGAGGAHGGGYGSGGG 180

Query: 181 VDGGYGRGDGVGSHAG-GSGIGAGGGYGGH 208
             GG G+G G GS +G G G G+GGG G H
Sbjct: 181 GGGGGGQGGGSGSGSGSGYGSGSGGGNGHH 185

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BLAST of CmoCh16G012150 vs. TrEMBL
Match: A0A0A0L1V3_CUCSA (Glycine-rich protein-1 OS=Cucumis sativus GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32
Identity = 140/255 (54.90%), Postives = 151/255 (59.22%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAI R LCL+FLL V LGLASA RTLLDYDPRT  YGYDRP+PR GYD GH DESYD AY
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S  G+G G SALGGSGY  GG    GYG+   +           G GYG+   YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHNDR----------GVGYGN---YGG- 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
              G G  GG   GY N G G YG      +G       G G+GNGY D H  GNG   D
Sbjct: 121 ---GYGGVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGSGGKGSGNGY-DDHSRGNGAR-D 180

Query: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG 240
             YG   G G        G   GY     GSG G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NSYGDSHGHG--------GRDSGY-----GSGGGVTGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALKNSISNKN 256
           YDGGYA+KNSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

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BLAST of CmoCh16G012150 vs. TrEMBL
Match: A0A0A0L1U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 143/279 (51.25%), Postives = 161/279 (57.71%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYD---PRTRHYGYDRP--NPREGYDSGHRDES 60
           MAI++ L   FLLLV LGLASAAR+LL YD    R+ +  YD P  NP+ GY+   RD  
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGY 60

Query: 61  Y------DNAYGGRSGGGYGDGS---SALGGSGYGSGGVRGSGYG----------NGGGN 120
           Y      D  YGG +GGGYG G+   S+LGGSGYGSGG  GSGYG          +GGG 
Sbjct: 61  YHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSGYGGVGNHEVGYGSGGGG 120

Query: 121 AYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGRSGGYENGGNG--GYGQGRDHDIGYG 180
            YG GV S +GG+GYGSG   GGG   G G  GGR  GY +GG G  GYG   DH +GYG
Sbjct: 121 GYGAGVGSDLGGSGYGSGG--GGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 180

Query: 181 SRNGNGNGNGNG-------YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGH 240
           S  G G G+G G       +G  +G G GGG   GYG   G G   GGSG G G GYGG 
Sbjct: 181 SGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGGSKGYG---GGSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG      YGSGG          GSGEEGGYDGGYA
Sbjct: 241 AHGSG------YGSGG--------GAGSGEEGGYDGGYA 260

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BLAST of CmoCh16G012150 vs. TrEMBL
Match: Q9ZWM2_CUCSA (Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.2e-23
Identity = 143/279 (51.25%), Postives = 161/279 (57.71%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYD---PRTRHYGYDRP--NPREGYDSGHRDES 60
           MAI++ L   FLLLV LGLASAAR+LL YD    R+ +  YD P  NP+ GY+   RD  
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLSYDIPPHRSGYDNYDHPVVNPKVGYEHDRRDGY 60

Query: 61  Y------DNAYGGRSGGGYGDGS---SALGGSGYGSGGVRGSGYG----------NGGGN 120
           Y      D  YGG +GGGYG G+   S+LGGSGYGSGG  GSGYG          +GGG 
Sbjct: 61  YHDRDHHDAPYGGGAGGGYGAGAGAGSSLGGSGYGSGGGGGSGYGGVGNHEVGYGSGGGG 120

Query: 121 AYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGRSGGYENGGNG--GYGQGRDHDIGYG 180
            YG GV S +GG+GYGSG   GGG   G G  GGR  GY +GG G  GYG   DH +GYG
Sbjct: 121 GYGAGVGSDLGGSGYGSGG--GGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVGYG 180

Query: 181 SRNGNGNGNGNG-------YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGH 240
           S  G G G+G G       +G  +G G GGG   GYG   G G   GGSG G G GYGG 
Sbjct: 181 SGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGGSKGYG---GGSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG      YGSGG          GSGEEGGYDGGYA
Sbjct: 241 AHGSG------YGSGG--------GAGSGEEGGYDGGYA 260

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BLAST of CmoCh16G012150 vs. TrEMBL
Match: A0A0A0L190_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 59/85 (69.41%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1  MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
          MAI+RVLC+ FLL VGLGLASA RTLLDYDPR R Y YDRP PR GYD  HRD+SYDN Y
Sbjct: 1  MAISRVLCIGFLLFVGLGLASATRTLLDYDPRARRYDYDRPTPRVGYDPSHRDQSYDNVY 60

Query: 61 GGRSGGGYGDGSSALGGSGYGSGGV 86
          GG S  GYG G SALG       GV
Sbjct: 61 GGSSSRGYGAGDSALGAKEVEKKGV 85

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BLAST of CmoCh16G012150 vs. TrEMBL
Match: A0A0A0L3Y0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 123/272 (45.22%), Postives = 139/272 (51.10%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESY---- 60
           MAI R     FLLLV LGLASA R+LL YDP   H  YD  N + GY   H D+ Y    
Sbjct: 10  MAIFRTFSFGFLLLVSLGLASATRSLLTYDP-PHHSVYDDHNTKVGYGRDHHDQPYGGGV 69

Query: 61  --DNAYGGRSGGGYGD-GSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGS 120
                YG  +G GYG  G       GY     R   YG   G  YG G  S +GG+GYG+
Sbjct: 70  GASGGYGAGAGSGYGGVGYEHDHHDGYERDHDRS--YGGSAGGGYGVGAGSSLGGSGYGN 129

Query: 121 GSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDI---GYGSRNGNGNGNGNG--YG 180
                   DHGVGY+        NGG+GGYG G   D+   GYGS NG  +G+GNG   G
Sbjct: 130 -------VDHGVGYS--------NGGSGGYGAGVGSDLGGSGYGSGNGGASGSGNGDLGG 189

Query: 181 DSHGYGNGGGVDGGY-GRGD-------------GVGSHAGGSGIGAGGGYGGHAGGSGIG 240
              GYG GG    GY GRGD             G   + GGSG+G G GY G A GSG G
Sbjct: 190 RGKGYGRGGVGGNGYGGRGDHGRVVGHDDVVYGGSKGYGGGSGVGGGAGYSGGASGSGYG 249

Query: 241 AGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYA 247
           +GG  GSG  +G       GSGEEGGYDGGYA
Sbjct: 250 SGGGAGSGSGYG-------GSGEEGGYDGGYA 256

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BLAST of CmoCh16G012150 vs. TAIR10
Match: AT5G46730.1 (AT5G46730.1 glycine-rich protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 111/255 (43.53%), Postives = 130/255 (50.98%), Query Frame = 1


Query: 11  FLLLVGLGLASA-ARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYG 70
           F L++G+ +  A +R LL+Y   +   G+       G  SG         YGG SGGGYG
Sbjct: 11  FFLILGVSICYATSRNLLNYGQASGGGGHGGGGGSGGVSSG--------GYGGESGGGYG 70

Query: 71  DGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHG---VG 130
            GS    G GYG       GY +GGG+ +GGG        GY SG+  GGG  +G    G
Sbjct: 71  GGSGEGAGGGYGG----AEGYASGGGSGHGGGGGGAASSGGYASGAGEGGGGGYGGAAGG 130

Query: 131 YAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNG-NGYGDSHGYGNGGGVDGGYGR 190
           +AGG  GG   GG   YG G +H  GYG+  G G G G +GYG    YG GGG  GG G 
Sbjct: 131 HAGGGGGGSGGGGGSAYGAGGEHASGYGNGAGEGGGAGASGYGGG-AYGGGGGHGGGGGG 190

Query: 191 GDGVGSHAGGSGIGAG--------------GGYGGHAGGSGIGAGGAYGSGGAHGGEHDN 247
           G   G+H GGSG G G              GGYGG  GG G G GGAYG GGAHGG +  
Sbjct: 191 GSAGGAH-GGSGYGGGEGGGAGGGGSHGGAGGYGG-GGGGGSGGGGAYGGGGAHGGGY-- 248

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BLAST of CmoCh16G012150 vs. NCBI nr
Match: gi|659096568|ref|XP_008449165.1| (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 9.1e-40
Identity = 146/255 (57.25%), Postives = 158/255 (61.96%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAI R LCL+FLL VGLGLASA RTLLDYDPRTRHYGYDRP+PR GYD GHRDESYDNAY
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S  G+G G SALGGSGY  GG R  GYG+   N           G GYG+G  YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRRDYGYGDRNDNR----------GVGYGNGGGYGG- 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
                   GG   GY N G GGYG      +G       G G+ NGY D H +G GG  D
Sbjct: 121 -------VGGHGDGYGNNGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGR-D 180

Query: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG 240
            GY  GD  G     SG G+GG           G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NGY--GDSHGHEGRDSGYGSGG-----------GVSGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALKNSISNKN 256
           YDGGYA+KNSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

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BLAST of CmoCh16G012150 vs. NCBI nr
Match: gi|659095616|ref|XP_008448676.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 160/271 (59.04%), Postives = 177/271 (65.31%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MA+ R L LSFLLLVGLGLASAARTLLDYDPRTR+YGYDRP PR GYD  HRDESYDN Y
Sbjct: 1   MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSG-----GVR----GSGYGNGGGNAYGGGVSSGVGGAGY 120
           GG S  G+G G SALGGS +  G     G R    G GYGNGGG  YG      VGG G 
Sbjct: 61  GGSSSKGHGIGDSALGGSEHEGGRHYQYGGRNDDHGVGYGNGGG--YGS-----VGGHGD 120

Query: 121 GSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNG---NGNGYG 180
           G G+  GGG  HG GY G   GGY + G  G G G +   GYGS  G+G+G   NG GYG
Sbjct: 121 GYGNNGGGG--HGDGY-GNNGGGYGSVGGHGDGYGNNGG-GYGSVGGHGDGYGNNGGGYG 180

Query: 181 DSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAG----GSGIGAGGAYGSGGA 240
              G+G+G G +GG G GD  G   GGSG G+ GG G   G      G G+GG YG+GG 
Sbjct: 181 SVGGHGDGYGNNGGGGYGDRYGPSLGGSGYGSSGGKGSGNGYGDSSHGYGSGG-YGNGGV 240

Query: 241 HGGEHDNSKGSGEEGGYDGGYALKNSISNKN 256
           H GE+ NSKGSGEEGGYDGGYA KNSIS +N
Sbjct: 241 HEGEYGNSKGSGEEGGYDGGYAAKNSISKEN 259

[Close]

BLAST of CmoCh16G012150 vs. NCBI nr
Match: gi|778688294|ref|XP_011652712.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 140/255 (54.90%), Postives = 151/255 (59.22%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAI R LCL+FLL V LGLASA RTLLDYDPRT  YGYDRP+PR GYD GH DESYD AY
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG S  G+G G SALGGSGY  GG    GYG+   +           G GYG+   YGG 
Sbjct: 61  GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHNDR----------GVGYGN---YGG- 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
              G G  GG   GY N G G YG      +G       G G+GNGY D H  GNG   D
Sbjct: 121 ---GYGGVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGSGGKGSGNGY-DDHSRGNGAR-D 180

Query: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG 240
             YG   G G        G   GY     GSG G  G YG+GG HGGE+DNSKGSGEEGG
Sbjct: 181 NSYGDSHGHG--------GRDSGY-----GSGGGVTGGYGNGGVHGGEYDNSKGSGEEGG 223

Query: 241 YDGGYALKNSISNKN 256
           YDGGYA+KNSIS  N
Sbjct: 241 YDGGYAVKNSISKGN 223

[Close]

BLAST of CmoCh16G012150 vs. NCBI nr
Match: gi|659096566|ref|XP_008449164.1| (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 8.9e-27
Identity = 151/301 (50.17%), Postives = 169/301 (56.15%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAI+R LC+SFLL V LGLASAARTLLDYDPRTR Y YD P PR GYD  HRD+SYDNAY
Sbjct: 1   MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGN---AYGGGVSSGVGGAGYGSGSRY 120
           GG S  GYG G SALGGSG   GG  G  YG GG N     G G  +   GAGYG+G  Y
Sbjct: 61  GGSSNRGYGVGDSALGGSGRYEGG-GGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAG--Y 120

Query: 121 GG-GEDHGVGYAGGRSGGYENGGNGGYG-QGRDHDIGYGSRNGNGNGNGNGYGDSH--GY 180
           GG  +D G GY     GG  +    GYG +  DH  GYG RN +      G  D    GY
Sbjct: 121 GGRNDDRGAGY-----GGRNDDRGAGYGRRNDDHGAGYGGRNDDRGAGYGGRNDDRGVGY 180

Query: 181 GNGGGVDGGYGRGDGVGSHAGG-----------------SGIGAGGGYGGHA---GGSGI 240
           GNGGG  G  G GDG G++ GG                  G G+G GY  H+   GG   
Sbjct: 181 GNGGGYGGVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGNGGKGSGNGYDDHSRGYGGHDN 240

Query: 241 GAGGAYGSGGA-------------------HGGEHDNSKGSGEEGGYDGGYALKNSISNK 256
           G G ++G GG                    HGGE+DNSKGSGE GG DGGYA+KNSIS +
Sbjct: 241 GYGDSHGHGGRDSGYGSGGGVSGGYGNGGVHGGEYDNSKGSGEGGGNDGGYAVKNSISKE 293

[Close]

BLAST of CmoCh16G012150 vs. NCBI nr
Match: gi|659095612|ref|XP_008448673.1| (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 140/279 (50.18%), Postives = 158/279 (56.63%), Query Frame = 1


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRP-------NPREGYDSGHRD 60
           MAI++ L   FLLLV LGLASAAR+LL YD      GYD         NP+ GY+  H D
Sbjct: 1   MAISKTLSFGFLLLVSLGLASAARSLLYYDMPPHRSGYDNNYDNHPVVNPKVGYEHDHHD 60

Query: 61  ESY------DNAYGGRSGGGYGDGS---SALGGSGYGSGGVRGSGYG----------NGG 120
             Y      D  YGG +GGGYG G    S+LGGSGYGSGG  GSGYG          +GG
Sbjct: 61  GYYHDRDHHDAPYGGGAGGGYGAGGGAGSSLGGSGYGSGGGGGSGYGGVGNHGVGYGSGG 120

Query: 121 GNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGRSGGYENGGNG--GYGQGRDHDIG 180
           G  YG GV S +GG+GYGSG   GGG   G G  GG   GY +GG G  GYG   DH +G
Sbjct: 121 GGGYGAGVGSDLGGSGYGSGG--GGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 180

Query: 181 YGSRNGNGNGNGNG-----YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGH 240
           YGS  G G G+G G     +G  +G G GGG  GGYG   G G+   GSG G G GYGG 
Sbjct: 181 YGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGA---GSGGGGGAGYGGG 240

Query: 241 AGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYA 247
           A GSG G+GG  G+            GSGEEGGYDGGYA
Sbjct: 241 AHGSGYGSGGGAGA------------GSGEEGGYDGGYA 262

The following BLAST results are available for this feature:

BLAST of CmoCh16G012150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRP2_PHAVU	2.2e-09	43.94	Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris PE=2 SV=1	[more]
GRP2_ORYSI	1.7e-06	46.19	Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica GN=GRP...	[more]
GRP2_ORYSJ	1.7e-06	46.19	Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica GN=G...	[more]

BLAST of CmoCh16G012150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1V3_CUCSA	8.3e-32	54.90	Glycine-rich protein-1 OS=Cucumis sativus GN=Csa_3G011070 PE=4 SV=1	[more]
A0A0A0L1U7_CUCSA	2.4e-23	51.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009540 PE=4 SV=1	[more]
Q9ZWM2_CUCSA	3.2e-23	51.25	Glycine-rich protein-2 (Fragment) OS=Cucumis sativus PE=2 SV=1	[more]
A0A0A0L190_CUCSA	1.8e-18	69.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G010050 PE=4 SV=1	[more]
A0A0A0L3Y0_CUCSA	1.5e-12	45.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G009550 PE=4 SV=1	[more]

BLAST of CmoCh16G012150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46730.1	2.1e-10	43.53	glycine-rich protein	[more]

BLAST of CmoCh16G012150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096568\|ref\|XP_008449165.1\|	9.1e-40	57.25	PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo]	[more]
gi\|659095616\|ref\|XP_008448676.1\|	2.6e-34	59.04	PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis ...	[more]
gi\|778688294\|ref\|XP_011652712.1\|	1.2e-31	54.90	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus]	[more]
gi\|659096566\|ref\|XP_008449164.1\|	8.9e-27	50.17	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]	[more]
gi\|659095612\|ref\|XP_008448673.1\|	1.2e-23	50.18	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012150.1	CmoCh16G012150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 201..219 score: 2.5E-7coord: 126..141 score: 2.5E-7coord: 4..20 score: 2.5E-7coord: 156..166 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G012150	Cucumber (Gy14) v2	cgybcmoB310
CmoCh16G012150	Cucumber (Gy14) v2	cgybcmoB315
CmoCh16G012150	Melon (DHL92) v3.6.1	cmomedB319
CmoCh16G012150	Melon (DHL92) v3.6.1	cmomedB329
CmoCh16G012150	Silver-seed gourd	carcmoB0677
CmoCh16G012150	Silver-seed gourd	carcmoB1050
CmoCh16G012150	Silver-seed gourd	carcmoB1291
CmoCh16G012150	Silver-seed gourd	carcmoB1300
CmoCh16G012150	Cucumber (Chinese Long) v3	cmocucB0377
CmoCh16G012150	Cucumber (Chinese Long) v3	cmocucB0382
CmoCh16G012150	Watermelon (97103) v2	cmowmbB342
CmoCh16G012150	Watermelon (97103) v2	cmowmbB320
CmoCh16G012150	Wax gourd	cmowgoB0419
CmoCh16G012150	Wax gourd	cmowgoB0441
CmoCh16G012150	Cucurbita moschata (Rifu)	cmocmoB277
CmoCh16G012150	Cucurbita moschata (Rifu)	cmocmoB278
CmoCh16G012150	Cucurbita moschata (Rifu)	cmocmoB293
CmoCh16G012150	Cucumber (Gy14) v1	cgycmoB0861
CmoCh16G012150	Cucumber (Gy14) v1	cgycmoB0885
CmoCh16G012150	Cucurbita maxima (Rimu)	cmacmoB323
CmoCh16G012150	Cucurbita maxima (Rimu)	cmacmoB504
CmoCh16G012150	Cucurbita maxima (Rimu)	cmacmoB585
CmoCh16G012150	Cucurbita maxima (Rimu)	cmacmoB807
CmoCh16G012150	Wild cucumber (PI 183967)	cmocpiB323
CmoCh16G012150	Wild cucumber (PI 183967)	cmocpiB327
CmoCh16G012150	Cucumber (Chinese Long) v2	cmocuB316
CmoCh16G012150	Cucumber (Chinese Long) v2	cmocuB319
CmoCh16G012150	Melon (DHL92) v3.5.1	cmomeB281
CmoCh16G012150	Melon (DHL92) v3.5.1	cmomeB284
CmoCh16G012150	Watermelon (Charleston Gray)	cmowcgB271
CmoCh16G012150	Watermelon (Charleston Gray)	cmowcgB276
CmoCh16G012150	Watermelon (97103) v1	cmowmB284
CmoCh16G012150	Watermelon (97103) v1	cmowmB285
CmoCh16G012150	Cucurbita pepo (Zucchini)	cmocpeB308
CmoCh16G012150	Cucurbita pepo (Zucchini)	cmocpeB310
CmoCh16G012150	Cucurbita pepo (Zucchini)	cmocpeB324
CmoCh16G012150	Cucurbita pepo (Zucchini)	cmocpeB327
CmoCh16G012150	Bottle gourd (USVL1VR-Ls)	cmolsiB285
CmoCh16G012150	Bottle gourd (USVL1VR-Ls)	cmolsiB313