CmoCh16G003350.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G003350.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCyclin-related family protein
LocationCmo_Chr16 : 1551786 .. 1556776 (+)
Sequence length1550
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATGTCGACATGTCAATCACAGCCTTCAAACTCCCGCCATCAATGGAGCTCACAGTCCCAATTCCCCGAATCCCCCAAAATTTCTTCCCAATTCACAGAGCCCTAACTAAATTCCACGTCAATTCCTCATCCTCATCCAAAAGCCCTAATTTCCAATTACCGCTTCCATCAAAATCGCCCAAGCCACCGAAAACCCTAATCGCTCCAAGAGGCGAAGAATTTCCGACGATGGCGGAGATCGTGGCGGCCGGCGAGGCCCAGAATATAAGCCTCCGGCTGCAAACGTTGGGGCCGTTTTTCCGAATAACGGCGAAAAGTTTGGAATCGCAGCGAGAGATTGGGAAGGCCGAGGGATTGATAAGAGTGTGGTTGCGAGGGAGGATTCTTCACCTGGATTCAATTCGATTGAAGCGAGAGAGCTTGGGAATGGAGAAATCGATCTTTGGACTCGGATTGTTCATCGGCGCTGTTGCGATTCGGTATGGGTATGACTGTGGGTGCAAGACGGCGGAGTTATTGGCCATCAATGACTCCGATCTTTACCATTCTAAGGTTGTTTTTTCTCTCTCATTTTTTACCTTTTTTCTGGATAGAATTTGTCAGTAATTTAAAACATAACTAAAATTGACATTACAGTTTTTATATAAAATTGATATTTTGAGACGAAACTAATATTAAAGTTAAAAAATATTTTTTTTAATAAAATTCTAAAGGATTGGGGCAGATTATAATATTTTTTAAATTTATTTCTATTTTTTATTTCAATTAAAATAACTCGACGTAATCCAATCCTACCCATTATTCCAATTATTTATTTTAATTTTTTTTAGTAATAAATTTTTATTTTACTAAAGTGAAATGTTTTAATTTTTAAATATTTAATTAAAATTTGGGAGTAAAAAATCATATTTTTAATAATAATTTGAGTATGTTCGTTAATCTACCTTTACAGAAAAGAAATTAATGAACTGCAATTTAATTGATAAAATTTTTCATTAATTTGACCTTAATTTTTTATTTTATTTTATGTTTTTATTTTTATCATCAACTCTTTTACATGTCATATTTTATATATTTTGAATGAAAAGAAATGTATCGAGGTTTAATATTGGCTACGTGTTTGGCAGCTCGTTAGATTCTACACAAGGATCGGGTTCAAGAGTGTGTATGAAGTGAGTGGTTCGAAGATAGGAGACATTGGGGACATGTTGGTGTGGGGAGGGGTTGGGACTAGAATGGATGCTCCCATTGAAGCCCTTCTACTTAAATGGTGTTCACGGTTCAAATCCCGGTCGTCCTAACCCACTAAACTTCCTTTGATGATGTACAACGTATCGTACACTTAGTTCGAGCTTATATTGAGAAAAATGTATTTGTACGTTAATTCAATATATTTATTTAATGTAAATGACGGAAGTTAAAATATTTTTTCAGATTAAATATTTACATGGTTAATTTTTATATAATTTTAACCAAAGAAATTAGTATTTAAAATATTTAAAGAATTACATTAAAATTTTATTAATCTAACATTTATATTGAAAAAAGGGTTGAATTAAATAATAATTATGTAATTTGAATATAACTTATGAGAGTCAAATTTCCATATAATTATTAATTACATCCTTGATTAATAAATAATAAGTTTTCTTTTATTTATTTATTTTTCTGGTAGTTTGACACGTCACTTCACCTTCCCGCGAGATGAAGCCCTAACTTCCCACCCTCTGTTTTAGTGTTTTTCACTTTCTTTCATTTTTTTTCTTTGACACAGAGAACAAAACGGCGCGAAGCAAATGTCGCGTCGTGAAATTCGGGAATCCGATTCCAATCGTCATCGTTCCAGATTCGATGGAGAACCCAGGTACCTTACCTCTCTTTGTCTGATTGTATTTCCATTTCTCTTAAGTTCATTGACTTTTGTTCGGTTTAAATGGTTTGTCTTTGTGTTAGCTTCCATTAAGGTTCCGGAATTTCCATAATTTTGCCCCAGTATGCTAGAGTGTCGGCGTGTGTGAAGTTTGTTGATGATGTTTGCTTTGATGTTGTCGTATTTCAAGCTTCAAGTTACGTAGAACATGTATTTTGATTGTTACCAAAGAAATGATTCGACAATTGCTTTTGCAATGCGCAGTCTAGTACTGCTTATGTCTATTAGTTCTAGTTTCAGATTAGTTCATGGTTATTGATGGCTACTCAGTACCACGCCATTGTTATCAGCCCTGCATTATGCCAATTCAATTTCCTCTAGTTCCAAAACGCTCTAAACAAATATTAATTTTCACTTTTTTGCATAGTCAAAAGTGAGGGATGTGAAGAGAAATGCATTACCATATTTGGATATTGCAGCAATAAGATGGCTTCATTCTTTTCCTTCCAATTGAATCAAAACAATACTGAGATAGAACAAGCGATTAATGTGTTTTAAGTATCGTGTTATACTTAATCATGGAACTCTAGTATGACATGAATATGTGGCTTATTGTTACTAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCACCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGCAAACAGGAACAGTGATAGGAGGGATAGAGGGACAAAACATTCAGTGAATCCCACTGAAGTACCACGATCAAGATCTTATTTACAGGTTTGTGCTACATTAAAGATAGTTTTTCAATTAATTTTGATAATTTCTTCCTTAGTTTTTGAAAAATTAATATTAGTCTAGTTTGATTGTACTAAATTTCATGGTTTTATCTCAATAATTATTGGCAGCATCTTAAGGCTCAGCATTGATATGCTTTACCATTTTGTTGTCTGTCATCTCAATCCCAAGTCACCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACCCCACACACACACACACACACACACACTATGATATATAATAAGGCTGGAAGCTTCAAAACGTTGTGTATTTTTATGGCTGAATTTAGCTGTAATTGCTATTATTCATTGCTTCTTTTCATATGAGCTGCTGAAGGGGGACTGCTGCAAAATATGGGCATAAAAATTACCTGACTTGGTCTTCTTCGAGATATCGTTGTACCTTCCCGGATATAAATGAACTATTGTGGGGATTTCCTATGAATTTCATGAAATTCATGATCTACATTATATTTCATTCAAATATGTTGGATGCAATAAAAGTGGTCATAAACCGCAGCCAATGTCTTCTTGAAGTGAAATGAGGGATTTTTTTAAGAGATTGTTTAAAGTAGGCATCTCAGCCAGAGCATTTCCTTCCTTTATAAAGTAAAGCCGTAGGATATGTTGTAACATGCTTTTTGTTGGGTCAACAAATGAATACATATATTTTTTGGGATCTTTTATTTTGATAGCTATGGAATTTCATCATCCACATTACTAAAACTAAATAGCTTATCTCAGTAATAATTCTCTCTTCTCTATATTTCTCTCTCCTTCCCCTGCTTTTCCCATTCTTTGCTGCAATTTAGATTCCCCAACATTTTGCTGGGCTGATGTTATTGAAATCTTGTTCAGCCCTGTGCCTTCAAGTGCATCCATGTATATTACTTAGGCTTGCCTGTGCATGTCTTATAACAGCATGTCAAACGTGGTAATGACGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGGTGGGTTTCTTACTTACTTTTAAGCCCCAATTCCAACTTTTTTTCAAGTTCTCTTCCTTATTTTTTCTCTTGTTACACGCCATGAGTACAGGTACACAAAGGACACGATGTTTAGTCTACTCCTTGTAACGTTACTGATCAAAGCTATTGCGCATGTATTGTTGTTGTTGTTATTATTGTTATTGTTATTTCGACTCTCATAAACGTTATTCTAAATATTTGGAGCAACTAAAAGATACTATTGTTTTTGTAGTTTATGTAGTCGTGCATGGGAAACTTTAGAATATCTCTTCAATCTTTCCATTCTTGTTTCTCTTCTCATGATTTAGTATCTGGGTTTGCCTTCTTTTTAGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGCAACAGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACGATAGCCACCGTGATGAGTCCTCGAAACAGGAGGTTGATGCACCCACATCTGCTTGGAAAAAGGCCTGCATTTAGGGAGAAGAAGATCACAGTAGGCGATGAAAATGGTGAGAAAGCAGCTACTGTATCAGAGATTCAGATATCGAGTGATCCACACCAGCCTCGGGATGGAAGGGAACGAAGAGAAGAAAGAGGCTGTCATACCCTTTATTTCAAAAATAAGAACTTGAAGGATACTTTTGAAAGAAAATTAACTAATTTCCTTCTAAATTAATGGTAAATGTATTTTTTTTTTTTAAAATTA

mRNA sequence

CCATGTCGACATGTCAATCACAGCCTTCAAACTCCCGCCATCAATGGAGCTCACAGTCCCAATTCCCCGAATCCCCCAAAATTTCTTCCCAATTCACAGAGCCCTAACTAAATTCCACGTCAATTCCTCATCCTCATCCAAAAGCCCTAATTTCCAATTACCGCTTCCATCAAAATCGCCCAAGCCACCGAAAACCCTAATCGCTCCAAGAGGCGAAGAATTTCCGACGATGGCGGAGATCGTGGCGGCCGGCGAGGCCCAGAATATAAGCCTCCGGCTGCAAACGTTGGGGCCGTTTTTCCGAATAACGGCGAAAAGTTTGGAATCGCAGCGAGAGATTGGGAAGGCCGAGGGATTGATAAGAGTGTGGTTGCGAGGGAGGATTCTTCACCTGGATTCAATTCGATTGAAGCGAGAGAGCTTGGGAATGGAGAAATCGATCTTTGGACTCGGATTGTTCATCGGCGCTGTTGCGATTCGGTATGGGTATGACTGTGGGTGCAAGACGGCGGAGTTATTGGCCATCAATGACTCCGATCTTTACCATTCTAAGCTCGTTAGATTCTACACAAGGATCGGGTTCAAGAGTGTGTATGAAGTGAGTGGTTCGAAGATAGGAGACATTGGGGACATGTTGGTGTGGGGAGGGGTTGGGACTAGAATGGATGCTCCCATTGAAGCCCTTCTACTTAAATGGTGTTCACGAGAACAAAACGGCGCGAAGCAAATGTCGCGTCGTGAAATTCGGGAATCCGATTCCAATCGTCATCGTTCCAGATTCGATGGAGAACCCAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCACCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGCAAACAGGAACAGTGATAGGAGGGATAGAGGGACAAAACATTCAGTGAATCCCACTGAAGTACCACGATCAAGATCTTATTTACAGCATGTCAAACGTGGTAATGACGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGCAACAGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACGATAGCCACCGTGATGAGTCCTCGAAACAGGAGGTTGATGCACCCACATCTGCTTGGAAAAAGGCCTGCATTTAGGGAGAAGAAGATCACAGTAGGCGATGAAAATGGTGAGAAAGCAGCTACTGTATCAGAGATTCAGATATCGAGTGATCCACACCAGCCTCGGGATGGAAGGGAACGAAGAGAAGAAAGAGGCTGTCATACCCTTTATTTCAAAAATAAGAACTTGAAGGATACTTTTGAAAGAAAATTAACTAATTTCCTTCTAAATTAATGGTAAATGTATTTTTTTTTTTTAAAATTA

Coding sequence (CDS)

ATGTCAATCACAGCCTTCAAACTCCCGCCATCAATGGAGCTCACAGTCCCAATTCCCCGAATCCCCCAAAATTTCTTCCCAATTCACAGAGCCCTAACTAAATTCCACGTCAATTCCTCATCCTCATCCAAAAGCCCTAATTTCCAATTACCGCTTCCATCAAAATCGCCCAAGCCACCGAAAACCCTAATCGCTCCAAGAGGCGAAGAATTTCCGACGATGGCGGAGATCGTGGCGGCCGGCGAGGCCCAGAATATAAGCCTCCGGCTGCAAACGTTGGGGCCGTTTTTCCGAATAACGGCGAAAAGTTTGGAATCGCAGCGAGAGATTGGGAAGGCCGAGGGATTGATAAGAGTGTGGTTGCGAGGGAGGATTCTTCACCTGGATTCAATTCGATTGAAGCGAGAGAGCTTGGGAATGGAGAAATCGATCTTTGGACTCGGATTGTTCATCGGCGCTGTTGCGATTCGGTATGGGTATGACTGTGGGTGCAAGACGGCGGAGTTATTGGCCATCAATGACTCCGATCTTTACCATTCTAAGCTCGTTAGATTCTACACAAGGATCGGGTTCAAGAGTGTGTATGAAGTGAGTGGTTCGAAGATAGGAGACATTGGGGACATGTTGGTGTGGGGAGGGGTTGGGACTAGAATGGATGCTCCCATTGAAGCCCTTCTACTTAAATGGTGTTCACGAGAACAAAACGGCGCGAAGCAAATGTCGCGTCGTGAAATTCGGGAATCCGATTCCAATCGTCATCGTTCCAGATTCGATGGAGAACCCAGTCCCAAGAGGTCAAGGAGGGACAGGAAAACATTAGAGGAGAAGTTATCTAGAAACTCTAGTTCTCATGTTGAAGATAATAAAGATCGGGATCAGAAACATGGGCTTCAACATGAGGGGCAAGATATGATACCCCATGAGTGTTCATCACCACTTGATTCTAAGCCAGAATATGGGGTTAGCAAAGGAGCAAACAGGAACAGTGATAGGAGGGATAGAGGGACAAAACATTCAGTGAATCCCACTGAAGTACCACGATCAAGATCTTATTTACAGCATGTCAAACGTGGTAATGACGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGGGAGCGTGGTTGGTGGAAGGACTCAAGGGAGAAGGAGAAGGATAACGATAGGGCATCTGGGAAGGCAACAGCTTATAATTCACAGCAAAGAGATGAGATGCCACAAGCCGTGAGAGACGATAGCCACCGTGATGAGTCCTCGAAACAGGAGGTTGATGCACCCACATCTGCTTGGAAAAAGGCCTGCATTTAG
Homology
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BLAST of CmoCh16G003350.1 vs. TrEMBL
Match: A0A0A0KT41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000740 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.2e-91
Identity = 179/222 (80.63%), Postives = 194/222 (87.39%), Query Frame = 1 

Query: 12  MEL-TVPIPRIPQNFFPIHRALTKFHVNSSSSSKSPNFQLPLPSKSPKPPKTLIAPRGEE 71
           MEL T+ IPRIP    PIHR LTK H  +SSSSKSPN QLPLPSK  +  +  I      
Sbjct: 1   MELFTITIPRIPHKNSPIHRTLTKIH--ASSSSKSPNSQLPLPSKFGRQNENNI------ 60

Query: 72  FPTMAEIVAAGEAQNISLRLQTLGPFFRITAKSLESQREIGKAEGLIRVWLRGRILHLDS 131
            PTMAEIVAAGEAQN+SLRLQTLGPFFRITAKSL ++REIGKAEGL+RVWL G+ILHLDS
Sbjct: 61  -PTMAEIVAAGEAQNLSLRLQTLGPFFRITAKSLGTEREIGKAEGLVRVWLGGKILHLDS 120

Query: 132 IRLKRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIG 191
           IRL RESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIG
Sbjct: 121 IRLNRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIG 180

Query: 192 FKSVYEVSGSKIGDIGDMLVWGGVGTRMDAPIEALLLKWCSR 233
           FKS+YEVSGSK+ DIGDMLVWGG+GTRMDAPI++LLLKWC+R
Sbjct: 181 FKSMYEVSGSKLKDIGDMLVWGGIGTRMDAPIDSLLLKWCTR 213

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BLAST of CmoCh16G003350.1 vs. TrEMBL
Match: B9HMZ7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09130g PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.8e-72
Identity = 141/206 (68.45%), Postives = 164/206 (79.61%), Query Frame = 1 

Query: 27  PIHRALTKFHVNSSSSSKSPNFQLPLPSKSPKPPKTLIAPRGEEFPTMAEIVAAGEAQNI 86
           P     TK H NSS      N Q  + + + K             PTM E++AA +AQN+
Sbjct: 76  PDQMTTTKTHFNSS------NIQYEINTNNIK---------NVAVPTMTEVLAASKAQNL 135

Query: 87  SLRLQTLGPFFRITAKSLESQREIGKAEGLIRVWLRGRILHLDSIRLKRESLGMEKSIFG 146
            L+LQTLGPFFRITAKSLE+Q E+G+AEGLIRVWL+G+ILHLDSIRL+RE+LGMEKSIFG
Sbjct: 136 DLQLQTLGPFFRITAKSLETQNELGRAEGLIRVWLKGKILHLDSIRLRRETLGMEKSIFG 195

Query: 147 LGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIGFKSVYEVSGSKIGDIG 206
           +GLFIGAVAIRYGYD GCKTAELLAINDSDLYHSKLVRFYTRIGFK+VYEV+GS IGD+ 
Sbjct: 196 IGLFIGAVAIRYGYDSGCKTAELLAINDSDLYHSKLVRFYTRIGFKAVYEVTGSTIGDLP 255

Query: 207 DMLVWGGVGTRMDAPIEALLLKWCSR 233
            MLVWGG+GTRMDA +E LL+KWC+R
Sbjct: 256 HMLVWGGIGTRMDADVEELLIKWCAR 266

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BLAST of CmoCh16G003350.1 vs. TrEMBL
Match: M5VIM7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026361mg PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.0e-70
Identity = 128/176 (72.73%), Postives = 154/176 (87.50%), Query Frame = 1 

Query: 61  KTLIAPRGEEFPTMAEIVAAGEAQNISLRLQTLGPFFRITAKSLESQREIGKAEGLIRVW 120
           K   A  G   PTM+EI+A+  AQN+ L+LQTLGPFFRITAKSLE+Q+E+GKAEGLIR W
Sbjct: 1   KNTEASSGATMPTMSEILASSRAQNLDLQLQTLGPFFRITAKSLETQKELGKAEGLIRFW 60

Query: 121 LRGRILHLDSIRLKRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHS 180
           L G+ILHL+SIRL+RE+LGMEKSIFG+GLFIGAVAIRYGYDCGC+TAELLAINDSD++H 
Sbjct: 61  LSGKILHLESIRLQRETLGMEKSIFGIGLFIGAVAIRYGYDCGCRTAELLAINDSDIFHH 120

Query: 181 KLVRFYTRIGFKSVYEVSGSKIGDIGDMLVWGGVGTRMDAPIEALLLKWCSREQNG 237
           KLVRFY+RIGFK+V+EV+GS  GD   MLVWGG+GTRMDA +E LL+KWC+R ++G
Sbjct: 121 KLVRFYSRIGFKAVHEVTGSTFGDYAHMLVWGGIGTRMDASVEELLIKWCTRFKSG 176

[Close]
BLAST of CmoCh16G003350.1 vs. TrEMBL
Match: F6H657_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00850 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 7.7e-70
Identity = 130/175 (74.29%), Postives = 151/175 (86.29%), Query Frame = 1 

Query: 58  KPPKTLIAPRGEEFPTMAEIVAAGEAQNISLRLQTLGPFFRITAKSLESQREIGKAEGLI 117
           KP            PTM+EI+ +  AQN++L+LQTLGPFFRITAKSLE+Q E+G+AEGLI
Sbjct: 42  KPHYNAAHKNSNSIPTMSEIMDSSRAQNLNLQLQTLGPFFRITAKSLETQGELGRAEGLI 101

Query: 118 RVWLRGRILHLDSIRLKRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDL 177
           RVWL GRILHLDSIRL+RE+LGMEKSIFG+GLFIGAVAIRYGYD GC+TAELLAINDSDL
Sbjct: 102 RVWLGGRILHLDSIRLRRETLGMEKSIFGIGLFIGAVAIRYGYDSGCRTAELLAINDSDL 161

Query: 178 YHSKLVRFYTRIGFKSVYEVSGSKIGDIGDMLVWGGVGTRMDAPIEALLLKWCSR 233
           YHSKLVRFYTRIGFK+V+EV+GS +GD+  MLVWGG+GTRMDA IE LL++WC R
Sbjct: 162 YHSKLVRFYTRIGFKAVHEVTGSSMGDLAHMLVWGGIGTRMDAKIEELLVRWCKR 216

[Close]
BLAST of CmoCh16G003350.1 vs. TrEMBL
Match: A0A0A0KV12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000750 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.3e-69
Identity = 149/194 (76.80%), Postives = 161/194 (82.99%), Query Frame = 1 

Query: 240 MSRREIRESDSNRHRSRFDGEPSPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHGLQH 299
           MSRRE RESDS RHRSRFD EPSPKRS+RDRKTLEEKLSRNSSSHVEDNK+RDQKH L+ 
Sbjct: 1   MSRREARESDSKRHRSRFDREPSPKRSKRDRKTLEEKLSRNSSSHVEDNKERDQKHELRL 60

Query: 300 EGQDMIPHECSSPLDSKPEYGVSKGANRNSDRRDRGTKHSVNPTEVPRSRSYLQHVKRGN 359
            GQDMIPHE S  L+SKPE G   GANRNSD RD GTKHSVNPTEVPRSRSY QH +R N
Sbjct: 61  VGQDMIPHESSLALESKPEGGAGIGANRNSDGRDGGTKHSVNPTEVPRSRSYFQHDERSN 120

Query: 360 DGQVGRSFGRSATRERGWWKDSREKEKDNDRASGKATAYNSQQRDEMPQAVRDDSHRDES 419
            GQVGRSFGRSAT ERGWWKDS++ +KD+DRASGK+  Y SQQRDE PQA R+D H D S
Sbjct: 121 AGQVGRSFGRSATSERGWWKDSKDPDKDSDRASGKSLTYKSQQRDEKPQAAREDRHHDGS 180

Query: 420 SKQEVDAPTSAWKK 434
           SK EVDA T A K+
Sbjct: 181 SKLEVDALTPARKR 194

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BLAST of CmoCh16G003350.1 vs. TAIR10
Match: AT3G19650.1 (AT3G19650.1 cyclin-related)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-09
Identity = 62/188 (32.98%), Postives = 92/188 (48.94%), Query Frame = 1 

Query: 241 SRREIRESDSNRHRSRFDGEPSPKRSRRDRKTLEEKLSRNSSSHVEDNKD--RDQKHGLQ 300
           +RRE R+SD  RHRSR D EPSPKRSRRD K   E++       V D  D  ++ +  L+
Sbjct: 3   TRRESRDSDPRRHRSRIDREPSPKRSRRDGKPEAERVLSKKDLDVRDGTDTEKNSRQSLR 62

Query: 301 HEGQDMIPHECSSPLDSKPEYGVSKGANRNSDRRDRG----TKHSVNPTEVPRSRSYLQH 360
               ++  H                G+ ++S+++  G    TK + + ++VPRSR Y QH
Sbjct: 63  DAPLELDAH----------------GSRKDSEKKHSGHHETTKAAPHLSQVPRSRPYSQH 122

Query: 361 VKRGNDGQVGRSFGRSATRERGWWKDSREKEKDNDRASGKATAYNSQQRDEMPQAVRDDS 420
             R +DG+V     R  T  RG W+ SR  ++ N RA       +  ++DE   + R D 
Sbjct: 123 DDRRSDGKV----DRRPTSVRGSWRSSR--DQSNRRAGDDEK--SQHRKDEDKSSWRHDR 166

Query: 421 HRDESSKQ 423
            R+    Q
Sbjct: 183 FRESDDTQ 166

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BLAST of CmoCh16G003350.1 vs. NCBI nr
Match: gi|659108807|ref|XP_008454398.1| (PREDICTED: uncharacterized protein LOC103494815 [Cucumis melo])

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 182/225 (80.89%), Postives = 197/225 (87.56%), Query Frame = 1 

Query: 12  MEL-TVPIPRIPQNFFPIHRALTKFHVNSSSSSKSPNFQLPLPSKSPKPPKTLIAPRGEE 71
           MEL T+ IPRIP    PIHR LTK H  +SSSSK PN QLPLPSKS      LI  RG+ 
Sbjct: 1   MELFTITIPRIPHKISPIHRTLTKIH--ASSSSKYPNSQLPLPSKS------LITTRGQN 60

Query: 72  ---FPTMAEIVAAGEAQNISLRLQTLGPFFRITAKSLESQREIGKAEGLIRVWLRGRILH 131
               PTMAEIVAAGE+QN+SLRLQTLGPFFRITAKSLE++REIGKAEGL+RVWL G+ILH
Sbjct: 61  ENNIPTMAEIVAAGESQNLSLRLQTLGPFFRITAKSLETEREIGKAEGLVRVWLGGKILH 120

Query: 132 LDSIRLKRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYT 191
           LDSIRL RESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYT
Sbjct: 121 LDSIRLNRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYT 180

Query: 192 RIGFKSVYEVSGSKIGDIGDMLVWGGVGTRMDAPIEALLLKWCSR 233
           RIGFKS+YEVSGSK+ DIGDM+VWGG+GTRMDAPIE+LLLKWC+R
Sbjct: 181 RIGFKSMYEVSGSKLKDIGDMVVWGGIGTRMDAPIESLLLKWCTR 217

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BLAST of CmoCh16G003350.1 vs. NCBI nr
Match: gi|778689175|ref|XP_004152376.2| (PREDICTED: uncharacterized protein LOC101217699 isoform X1 [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91
Identity = 179/222 (80.63%), Postives = 194/222 (87.39%), Query Frame = 1 

Query: 12  MEL-TVPIPRIPQNFFPIHRALTKFHVNSSSSSKSPNFQLPLPSKSPKPPKTLIAPRGEE 71
           MEL T+ IPRIP    PIHR LTK H  +SSSSKSPN QLPLPSK  +  +  I      
Sbjct: 1   MELFTITIPRIPHKNSPIHRTLTKIH--ASSSSKSPNSQLPLPSKFGRQNENNI------ 60

Query: 72  FPTMAEIVAAGEAQNISLRLQTLGPFFRITAKSLESQREIGKAEGLIRVWLRGRILHLDS 131
            PTMAEIVAAGEAQN+SLRLQTLGPFFRITAKSL ++REIGKAEGL+RVWL G+ILHLDS
Sbjct: 61  -PTMAEIVAAGEAQNLSLRLQTLGPFFRITAKSLGTEREIGKAEGLVRVWLGGKILHLDS 120

Query: 132 IRLKRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIG 191
           IRL RESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIG
Sbjct: 121 IRLNRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIG 180

Query: 192 FKSVYEVSGSKIGDIGDMLVWGGVGTRMDAPIEALLLKWCSR 233
           FKS+YEVSGSK+ DIGDMLVWGG+GTRMDAPI++LLLKWC+R
Sbjct: 181 FKSMYEVSGSKLKDIGDMLVWGGIGTRMDAPIDSLLLKWCTR 213

[Close]
BLAST of CmoCh16G003350.1 vs. NCBI nr
Match: gi|224105727|ref|XP_002313913.1| (hypothetical protein POPTR_0009s09130g [Populus trichocarpa])

HSP 1 Score: 280.8 bits (717), Expect = 4.1e-72
Identity = 141/206 (68.45%), Postives = 164/206 (79.61%), Query Frame = 1 

Query: 27  PIHRALTKFHVNSSSSSKSPNFQLPLPSKSPKPPKTLIAPRGEEFPTMAEIVAAGEAQNI 86
           P     TK H NSS      N Q  + + + K             PTM E++AA +AQN+
Sbjct: 76  PDQMTTTKTHFNSS------NIQYEINTNNIK---------NVAVPTMTEVLAASKAQNL 135

Query: 87  SLRLQTLGPFFRITAKSLESQREIGKAEGLIRVWLRGRILHLDSIRLKRESLGMEKSIFG 146
            L+LQTLGPFFRITAKSLE+Q E+G+AEGLIRVWL+G+ILHLDSIRL+RE+LGMEKSIFG
Sbjct: 136 DLQLQTLGPFFRITAKSLETQNELGRAEGLIRVWLKGKILHLDSIRLRRETLGMEKSIFG 195

Query: 147 LGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIGFKSVYEVSGSKIGDIG 206
           +GLFIGAVAIRYGYD GCKTAELLAINDSDLYHSKLVRFYTRIGFK+VYEV+GS IGD+ 
Sbjct: 196 IGLFIGAVAIRYGYDSGCKTAELLAINDSDLYHSKLVRFYTRIGFKAVYEVTGSTIGDLP 255

Query: 207 DMLVWGGVGTRMDAPIEALLLKWCSR 233
            MLVWGG+GTRMDA +E LL+KWC+R
Sbjct: 256 HMLVWGGIGTRMDADVEELLIKWCAR 266

[Close]
BLAST of CmoCh16G003350.1 vs. NCBI nr
Match: gi|743795183|ref|XP_011001969.1| (PREDICTED: uncharacterized protein LOC105109073 [Populus euphratica])

HSP 1 Score: 280.8 bits (717), Expect = 4.1e-72
Identity = 142/206 (68.93%), Postives = 164/206 (79.61%), Query Frame = 1 

Query: 27  PIHRALTKFHVNSSSSSKSPNFQLPLPSKSPKPPKTLIAPRGEEFPTMAEIVAAGEAQNI 86
           P     TK H+NSS      N Q  + + +          R    PTM E++AA +AQN+
Sbjct: 38  PDQMTTTKTHLNSS------NIQYEINTNNI---------RNVAVPTMTEVLAASKAQNL 97

Query: 87  SLRLQTLGPFFRITAKSLESQREIGKAEGLIRVWLRGRILHLDSIRLKRESLGMEKSIFG 146
            L+LQ LGPFFRITAKSLE+Q E+G+AEGLIRVWL+G+ILHLDSIRL+RE+LGMEKSIFG
Sbjct: 98  DLQLQILGPFFRITAKSLETQNELGRAEGLIRVWLKGKILHLDSIRLRRETLGMEKSIFG 157

Query: 147 LGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIGFKSVYEVSGSKIGDIG 206
           +GLFIGAVAIRYGYD GCKTAELLAINDSDLYHSKLVRFYTRIGFK+VYEV+GS IGD+ 
Sbjct: 158 IGLFIGAVAIRYGYDSGCKTAELLAINDSDLYHSKLVRFYTRIGFKAVYEVTGSTIGDLP 217

Query: 207 DMLVWGGVGTRMDAPIEALLLKWCSR 233
            MLVWGG+GTRMDA IE LLLKWC+R
Sbjct: 218 HMLVWGGIGTRMDADIEELLLKWCAR 228

[Close]
BLAST of CmoCh16G003350.1 vs. NCBI nr
Match: gi|743938690|ref|XP_011013784.1| (PREDICTED: uncharacterized protein LOC105117727 [Populus euphratica])

HSP 1 Score: 279.6 bits (714), Expect = 9.1e-72
Identity = 131/161 (81.37%), Postives = 151/161 (93.79%), Query Frame = 1 

Query: 72  PTMAEIVAAGEAQNISLRLQTLGPFFRITAKSLESQREIGKAEGLIRVWLRGRILHLDSI 131
           PTM E++AA +AQN+ L+LQTLGPFFRITAKSLE+Q E+G+AEGLIRVWL+G+ILHLDSI
Sbjct: 68  PTMTEVLAASKAQNLDLQLQTLGPFFRITAKSLETQNELGRAEGLIRVWLKGKILHLDSI 127

Query: 132 RLKRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIGF 191
           RL+RE+LGMEKSIFG+GLFIGAVAIRYGYD GCKTAELLAINDSDLYHSKLVRFYTRIGF
Sbjct: 128 RLRRETLGMEKSIFGIGLFIGAVAIRYGYDSGCKTAELLAINDSDLYHSKLVRFYTRIGF 187

Query: 192 KSVYEVSGSKIGDIGDMLVWGGVGTRMDAPIEALLLKWCSR 233
           ++VYEV+GS IGD+  MLVWGG+GTRMDA IE LL+KWC+R
Sbjct: 188 EAVYEVTGSTIGDLPHMLVWGGIGTRMDADIEELLIKWCAR 228

The following BLAST results are available for this feature:
BLAST of CmoCh16G003350.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G003350.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT41_CUCSA1.2e-9180.63Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000740 PE=4 SV=1[more]
B9HMZ7_POPTR2.8e-7268.45Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09130g PE=4 SV=1[more]
M5VIM7_PRUPE2.0e-7072.73Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026361mg PE=4 S... [more]
F6H657_VITVI7.7e-7074.29Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00850 PE=4 SV=... [more]
A0A0A0KV12_CUCSA1.3e-6976.80Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000750 PE=4 SV=1[more]
BLAST of CmoCh16G003350.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19650.15.2e-0932.98 cyclin-related[more]
BLAST of CmoCh16G003350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108807|ref|XP_008454398.1|1.4e-9380.89PREDICTED: uncharacterized protein LOC103494815 [Cucumis melo][more]
gi|778689175|ref|XP_004152376.2|1.8e-9180.63PREDICTED: uncharacterized protein LOC101217699 isoform X1 [Cucumis sativus][more]
gi|224105727|ref|XP_002313913.1|4.1e-7268.45hypothetical protein POPTR_0009s09130g [Populus trichocarpa][more]
gi|743795183|ref|XP_011001969.1|4.1e-7268.93PREDICTED: uncharacterized protein LOC105109073 [Populus euphratica][more]
gi|743938690|ref|XP_011013784.1|9.1e-7281.37PREDICTED: uncharacterized protein LOC105117727 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh16G003350CmoCh16G003350gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh16G003350.1CmoCh16G003350.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G003350.1.exon.1CmoCh16G003350.1.exon.1exon
CmoCh16G003350.1.exon.2CmoCh16G003350.1.exon.2exon
CmoCh16G003350.1.exon.3CmoCh16G003350.1.exon.3exon
CmoCh16G003350.1.exon.4CmoCh16G003350.1.exon.4exon
CmoCh16G003350.1.exon.5CmoCh16G003350.1.exon.5exon
CmoCh16G003350.1.exon.6CmoCh16G003350.1.exon.6exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G003350.1.five_prime_UTR.1CmoCh16G003350.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G003350.1.CDS.1CmoCh16G003350.1.CDS.1CDS
CmoCh16G003350.1.CDS.2CmoCh16G003350.1.CDS.2CDS
CmoCh16G003350.1.CDS.3CmoCh16G003350.1.CDS.3CDS
CmoCh16G003350.1.CDS.4CmoCh16G003350.1.CDS.4CDS
CmoCh16G003350.1.CDS.5CmoCh16G003350.1.CDS.5CDS
CmoCh16G003350.1.CDS.6CmoCh16G003350.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G003350.1.three_prime_UTR.1CmoCh16G003350.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36897FAMILY NOT NAMEDcoord: 71..245
score: 5.3E
NoneNo IPR availablePANTHERPTHR36897:SF1SUBFAMILY NOT NAMEDcoord: 71..245
score: 5.3E