CmoCh16G002420.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002420.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1072714 .. 1072941 (+)
Sequence length228
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA

mRNA sequence

ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA

Coding sequence (CDS)

ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA
Homology
[Close]
BLAST of CmoCh16G002420.1 vs. TrEMBL
Match: A0A0A0KXN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025050 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-20
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASA---DNAGYLSD 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLN        VNNV  DN+A+A   D+AGYLSD
Sbjct: 45  MENRDESMRKSLSMGNLNLHSCNNVLDLNN----TTTVNNVTGDNTAAAASTDDAGYLSD 104

Query: 61  GFIHNKRRKAAHERKKG 75
           G IHNKRRKAAHERKKG
Sbjct: 105 GLIHNKRRKAAHERKKG 117

[Close]
BLAST of CmoCh16G002420.1 vs. NCBI nr
Match: gi|659107781|ref|XP_008453855.1| (PREDICTED: transcription factor MYB1R1 isoform X2 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-21
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHS-CNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGF 60
           MENRDESMRKSLSMGNLNLHS CNNVLDLN    A   VNNV  DN+ASAD++GYLSDG 
Sbjct: 44  MENRDESMRKSLSMGNLNLHSSCNNVLDLNNNTTA---VNNVTGDNAASADDSGYLSDGL 103

Query: 61  IHNKRRKAAHERKKG 75
           IHNKRRKAAHERKKG
Sbjct: 104 IHNKRRKAAHERKKG 115

[Close]
BLAST of CmoCh16G002420.1 vs. NCBI nr
Match: gi|659107779|ref|XP_008453854.1| (PREDICTED: transcription factor MYB1R1 isoform X1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-21
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHS-CNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGF 60
           MENRDESMRKSLSMGNLNLHS CNNVLDLN    A   VNNV  DN+ASAD++GYLSDG 
Sbjct: 44  MENRDESMRKSLSMGNLNLHSSCNNVLDLNNNTTA---VNNVTGDNAASADDSGYLSDGL 103

Query: 61  IHNKRRKAAHERKKG 75
           IHNKRRKAAHERKKG
Sbjct: 104 IHNKRRKAAHERKKG 115

[Close]
BLAST of CmoCh16G002420.1 vs. NCBI nr
Match: gi|778697489|ref|XP_004146936.2| (PREDICTED: myb-like protein I [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASA---DNAGYLSD 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLN        VNNV  DN+A+A   D+AGYLSD
Sbjct: 45  MENRDESMRKSLSMGNLNLHSCNNVLDLNN----TTTVNNVTGDNTAAAASTDDAGYLSD 104

Query: 61  GFIHNKRRKAAHERKKG 75
           G IHNKRRKAAHERKKG
Sbjct: 105 GLIHNKRRKAAHERKKG 117

[Close]
BLAST of CmoCh16G002420.1 vs. NCBI nr
Match: gi|470146824|ref|XP_004309020.1| (PREDICTED: myb-like protein J isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           ME +++S++KS SMGNL             AA      NN+    +  AD+AGYLSDG I
Sbjct: 46  MERQEDSIKKSYSMGNLQ------------AAGNGDQNNNI----NVGADDAGYLSDGLI 103

Query: 61  HNKRRKAAHERKKG 75
           HNK+RKAAHERKKG
Sbjct: 106 HNKKRKAAHERKKG 103

[Close]
BLAST of CmoCh16G002420.1 vs. NCBI nr
Match: gi|764634901|ref|XP_011470039.1| (PREDICTED: myb-like protein J isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           ME +++S++KS SMGNL             AA      NN+    +  AD+AGYLSDG I
Sbjct: 46  MERQEDSIKKSYSMGNLQ------------AAGNGDQNNNI----NVGADDAGYLSDGLI 103

Query: 61  HNKRRKAAHERKKG 75
           HNK+RKAAHERKKG
Sbjct: 106 HNKKRKAAHERKKG 103

The following BLAST results are available for this feature:
BLAST of CmoCh16G002420.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002420.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXN0_CUCSA1.3e-2077.92Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025050 PE=4 SV=1[more]
BLAST of CmoCh16G002420.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002420.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107781|ref|XP_008453855.1|6.2e-2181.33PREDICTED: transcription factor MYB1R1 isoform X2 [Cucumis melo][more]
gi|659107779|ref|XP_008453854.1|6.2e-2181.33PREDICTED: transcription factor MYB1R1 isoform X1 [Cucumis melo][more]
gi|778697489|ref|XP_004146936.2|1.8e-2077.92PREDICTED: myb-like protein I [Cucumis sativus][more]
gi|470146824|ref|XP_004309020.1|9.6e-0650.00PREDICTED: myb-like protein J isoform X1 [Fragaria vesca subsp. vesca][more]
gi|764634901|ref|XP_011470039.1|9.6e-0650.00PREDICTED: myb-like protein J isoform X2 [Fragaria vesca subsp. vesca][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh16G002420CmoCh16G002420gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh16G002420.1CmoCh16G002420.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G002420.1.exon.1CmoCh16G002420.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G002420.1.CDS.1CmoCh16G002420.1.CDS.1CDS