CmoCh16G002420 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 1072714 .. 1072941 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA

mRNA sequence

ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA

Coding sequence (CDS)

ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA
Homology
[Close]
BLAST of CmoCh16G002420 vs. TrEMBL
Match: A0A0A0KXN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025050 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-20
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASA---DNAGYLSD 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLN        VNNV  DN+A+A   D+AGYLSD
Sbjct: 45  MENRDESMRKSLSMGNLNLHSCNNVLDLNN----TTTVNNVTGDNTAAAASTDDAGYLSD 104

Query: 61  GFIHNKRRKAAHERKKG 75
           G IHNKRRKAAHERKKG
Sbjct: 105 GLIHNKRRKAAHERKKG 117

[Close]
BLAST of CmoCh16G002420 vs. NCBI nr
Match: gi|659107781|ref|XP_008453855.1| (PREDICTED: transcription factor MYB1R1 isoform X2 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-21
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHS-CNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGF 60
           MENRDESMRKSLSMGNLNLHS CNNVLDLN    A   VNNV  DN+ASAD++GYLSDG 
Sbjct: 44  MENRDESMRKSLSMGNLNLHSSCNNVLDLNNNTTA---VNNVTGDNAASADDSGYLSDGL 103

Query: 61  IHNKRRKAAHERKKG 75
           IHNKRRKAAHERKKG
Sbjct: 104 IHNKRRKAAHERKKG 115

[Close]
BLAST of CmoCh16G002420 vs. NCBI nr
Match: gi|659107779|ref|XP_008453854.1| (PREDICTED: transcription factor MYB1R1 isoform X1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.2e-21
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHS-CNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGF 60
           MENRDESMRKSLSMGNLNLHS CNNVLDLN    A   VNNV  DN+ASAD++GYLSDG 
Sbjct: 44  MENRDESMRKSLSMGNLNLHSSCNNVLDLNNNTTA---VNNVTGDNAASADDSGYLSDGL 103

Query: 61  IHNKRRKAAHERKKG 75
           IHNKRRKAAHERKKG
Sbjct: 104 IHNKRRKAAHERKKG 115

[Close]
BLAST of CmoCh16G002420 vs. NCBI nr
Match: gi|778697489|ref|XP_004146936.2| (PREDICTED: myb-like protein I [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASA---DNAGYLSD 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLN        VNNV  DN+A+A   D+AGYLSD
Sbjct: 45  MENRDESMRKSLSMGNLNLHSCNNVLDLNN----TTTVNNVTGDNTAAAASTDDAGYLSD 104

Query: 61  GFIHNKRRKAAHERKKG 75
           G IHNKRRKAAHERKKG
Sbjct: 105 GLIHNKRRKAAHERKKG 117

[Close]
BLAST of CmoCh16G002420 vs. NCBI nr
Match: gi|470146824|ref|XP_004309020.1| (PREDICTED: myb-like protein J isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           ME +++S++KS SMGNL             AA      NN+    +  AD+AGYLSDG I
Sbjct: 46  MERQEDSIKKSYSMGNLQ------------AAGNGDQNNNI----NVGADDAGYLSDGLI 103

Query: 61  HNKRRKAAHERKKG 75
           HNK+RKAAHERKKG
Sbjct: 106 HNKKRKAAHERKKG 103

[Close]
BLAST of CmoCh16G002420 vs. NCBI nr
Match: gi|764634901|ref|XP_011470039.1| (PREDICTED: myb-like protein J isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           ME +++S++KS SMGNL             AA      NN+    +  AD+AGYLSDG I
Sbjct: 46  MERQEDSIKKSYSMGNLQ------------AAGNGDQNNNI----NVGADDAGYLSDGLI 103

Query: 61  HNKRRKAAHERKKG 75
           HNK+RKAAHERKKG
Sbjct: 106 HNKKRKAAHERKKG 103

The following BLAST results are available for this feature:
BLAST of CmoCh16G002420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXN0_CUCSA1.3e-2077.92Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025050 PE=4 SV=1[more]
BLAST of CmoCh16G002420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107781|ref|XP_008453855.1|6.2e-2181.33PREDICTED: transcription factor MYB1R1 isoform X2 [Cucumis melo][more]
gi|659107779|ref|XP_008453854.1|6.2e-2181.33PREDICTED: transcription factor MYB1R1 isoform X1 [Cucumis melo][more]
gi|778697489|ref|XP_004146936.2|1.8e-2077.92PREDICTED: myb-like protein I [Cucumis sativus][more]
gi|470146824|ref|XP_004309020.1|9.6e-0650.00PREDICTED: myb-like protein J isoform X1 [Fragaria vesca subsp. vesca][more]
gi|764634901|ref|XP_011470039.1|9.6e-0650.00PREDICTED: myb-like protein J isoform X2 [Fragaria vesca subsp. vesca][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002420.1CmoCh16G002420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002420MELO3C017638.2Melon (DHL92) v3.6.1cmomedB343
CmoCh16G002420CsaV3_4G004280Cucumber (Chinese Long) v3cmocucB0384
CmoCh16G002420Cla97C07G144100Watermelon (97103) v2cmowmbB337
CmoCh16G002420Carg08040Silver-seed gourdcarcmoB0509
CmoCh16G002420Carg16765Silver-seed gourdcarcmoB1175
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002420Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002420Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002420Cucurbita pepo (Zucchini)cmocpeB325
CmoCh16G002420Bottle gourd (USVL1VR-Ls)cmolsiB289
CmoCh16G002420Bottle gourd (USVL1VR-Ls)cmolsiB312
CmoCh16G002420Cucumber (Gy14) v2cgybcmoB464
CmoCh16G002420Cucumber (Gy14) v2cgybcmoB598
CmoCh16G002420Silver-seed gourdcarcmoB0967
CmoCh16G002420Cucumber (Chinese Long) v3cmocucB0402
CmoCh16G002420Watermelon (97103) v2cmowmbB312
CmoCh16G002420Wax gourdcmowgoB0438
CmoCh16G002420Cucurbita moschata (Rifu)cmocmoB280
CmoCh16G002420Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002420Cucumber (Gy14) v1cgycmoB0189
CmoCh16G002420Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002420Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002420Wild cucumber (PI 183967)cmocpiB328
CmoCh16G002420Wild cucumber (PI 183967)cmocpiB341
CmoCh16G002420Cucumber (Chinese Long) v2cmocuB321
CmoCh16G002420Cucumber (Chinese Long) v2cmocuB333
CmoCh16G002420Melon (DHL92) v3.5.1cmomeB299
CmoCh16G002420Watermelon (Charleston Gray)cmowcgB287
CmoCh16G002420Watermelon (Charleston Gray)cmowcgB295
CmoCh16G002420Watermelon (97103) v1cmowmB307