CmoCh14G020580.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G020580.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	D-isomer specific 2-hydroxyacid dehydrogenase family protein
Location	Cmo_Chr14 : 15030230 .. 15030460 (+)
Sequence length	231

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATTCTGGGGTGCTGGGTGTCACAATCGCATCGCACTTCGAGCATGACCGTGACACTGGGCTGGATGTGTTTGAGAATGAACCCGAAATTCCGAAACAGCTCTTTAAACTAGATAATGGTGCTATCATAACACATGAATCTTTTGTGGGAATGTCTAAGTTGGTGGTGGAAAACATGGAGGCACTCTTCTCAAACAAACCTCTGGTGTCTCCCTTCATGGATTAG

mRNA sequence

ATGTTTGATTCTGGGGTGCTGGGTGTCACAATCGCATCGCACTTCGAGCATGACCGTGACACTGGGCTGGATGTGTTTGAGAATGAACCCGAAATTCCGAAACAGCTCTTTAAACTAGATAATGGTGCTATCATAACACATGAATCTTTTGTGGGAATGTCTAAGTTGGTGGTGGAAAACATGGAGGCACTCTTCTCAAACAAACCTCTGGTGTCTCCCTTCATGGATTAG

Coding sequence (CDS)

ATGTTTGATTCTGGGGTGCTGGGTGTCACAATCGCATCGCACTTCGAGCATGACCGTGACACTGGGCTGGATGTGTTTGAGAATGAACCCGAAATTCCGAAACAGCTCTTTAAACTAGATAATGGTGCTATCATAACACATGAATCTTTTGTGGGAATGTCTAAGTTGGTGGTGGAAAACATGGAGGCACTCTTCTCAAACAAACCTCTGGTGTCTCCCTTCATGGATTAG

Homology

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BLAST of CmoCh14G020580.1 vs. Swiss-Prot
Match: HPPR_PLESU (Hydroxyphenylpyruvate reductase OS=Plectranthus scutellarioides GN=HPPR PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDNGAIITH------ESFVGMSKLVVENMEALFSNKPLVSP 74
           GLDVFE EPE+P++LF L+N  ++ H      E+   M+ LVV N+EA FS KPL++P
Sbjct: 254 GLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTP 311

[Close]

BLAST of CmoCh14G020580.1 vs. Swiss-Prot
Match: HPR3_ARATH (Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-07
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSP 74
           GLDVFENEP +P++LF LDN       A+ T  S   ++++ + N++A FSN+PL+SP
Sbjct: 262 GLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKAFFSNRPLLSP 319

[Close]

BLAST of CmoCh14G020580.1 vs. TrEMBL
Match: A0A0A0L908_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124900 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 76
           GLDVFE EPEIPKQLF LDN       A+ THESFVG++KL VEN+EA FSNKPL+SP++
Sbjct: 265 GLDVFEFEPEIPKQLFTLDNVVLSPHTAVTTHESFVGIAKLAVENLEAFFSNKPLLSPYV 324

[Close]

BLAST of CmoCh14G020580.1 vs. TrEMBL
Match: A0A0A0L4C2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124920 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-12
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 19  RDTGLDVFENEPEIPKQLFKLDNG------AIITHESFVGMSKLVVENMEALFSNKPLVS 77
           +  GLDVFE+EPEIPKQLF LDN       A+ T ES  G+ +L +EN+EA FSNKPLVS
Sbjct: 264 KGAGLDVFEDEPEIPKQLFNLDNVVLSPHVAVTTTESIAGLIELALENLEAFFSNKPLVS 323

[Close]

BLAST of CmoCh14G020580.1 vs. TrEMBL
Match: A0A0A0L7K6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124910 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 77
           GLDVFENEP +P++LF LDN       A++T+ES V +SKLVV N+EA FSNKPLVSP +
Sbjct: 272 GLDVFENEPNVPEELFNLDNVVLSPHAAVMTYESKVELSKLVVNNLEAFFSNKPLVSPVV 331

[Close]

BLAST of CmoCh14G020580.1 vs. TrEMBL
Match: B9IC39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06940g PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 77
           GLDVFENEP++PK+LF+LDN       A+ T ESF+ + +LVV N+EA FSN PL+SP +
Sbjct: 278 GLDVFENEPDVPKELFELDNVVLSPHRAVFTSESFMALCELVVGNLEAFFSNTPLLSPVI 337

[Close]

BLAST of CmoCh14G020580.1 vs. TrEMBL
Match: A0A067H4Q9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020160mg PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPF 75
           GLDVFENEP++P+QLF LDN       A+ T ESF  + +L V N+EA FSNKPL++PF
Sbjct: 268 GLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF 326

[Close]

BLAST of CmoCh14G020580.1 vs. TAIR10
Match: AT2G45630.2 (AT2G45630.2 D-isomer specific 2-hydroxyacid dehydrogenase family protein)

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 76
           GLDVFE+EP +PK+LF+LDN       A +T E    + K+VV N+EA FSNKPL++P +
Sbjct: 279 GLDVFEDEPNVPKELFELDNVVFSPHSAFMTLEGLEELGKVVVGNIEAFFSNKPLLTPVL 338

[Close]

BLAST of CmoCh14G020580.1 vs. TAIR10
Match: AT1G12550.1 (AT1G12550.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-08
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSP 74
           GLDVFENEP +P++LF LDN       A+ T  S   ++++ + N++A FSN+PL+SP
Sbjct: 262 GLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKAFFSNRPLLSP 319

[Close]

BLAST of CmoCh14G020580.1 vs. TAIR10
Match: AT1G79870.1 (AT1G79870.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein)

HSP 1 Score: 50.1 bits (118), Expect = 7.2e-07
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 23  LDVFENEPEIPKQLFKLDNGAIITH------ESFVGMSKLVVENMEALFSNKPLVSP 74
           LDVFE EP +P++LF L+N  ++ H      E+   M+ LVV N+EA FS K L++P
Sbjct: 255 LDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLEAHFSGKSLLTP 311

[Close]

BLAST of CmoCh14G020580.1 vs. NCBI nr
Match: gi|659077733|ref|XP_008439355.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 76
           GLDVFE EPEIPKQLF LDN       AI THESF GM+KL VEN+EA FSNKPLVSP++
Sbjct: 262 GLDVFEFEPEIPKQLFTLDNVVLSPHAAITTHESFGGMAKLAVENLEAFFSNKPLVSPYL 321

[Close]

BLAST of CmoCh14G020580.1 vs. NCBI nr
Match: gi|659075382|ref|XP_008438113.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDNG------AIITHESFVGMSKLVVENMEALFSNKPLVSPF 75
           GLDVFENEPEIP++LF  DN       A++THE+ VG+S+LVV+N+EALFSNKPLVSPF
Sbjct: 270 GLDVFENEPEIPEELFNFDNVVLSPHVAVMTHETLVGLSRLVVDNLEALFSNKPLVSPF 328

[Close]

BLAST of CmoCh14G020580.1 vs. NCBI nr
Match: gi|449433109|ref|XP_004134340.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 76
           GLDVFE EPEIPKQLF LDN       A+ THESFVG++KL VEN+EA FSNKPL+SP++
Sbjct: 265 GLDVFEFEPEIPKQLFTLDNVVLSPHTAVTTHESFVGIAKLAVENLEAFFSNKPLLSPYV 324

[Close]

BLAST of CmoCh14G020580.1 vs. NCBI nr
Match: gi|778677348|ref|XP_004133892.2| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDNG------AIITHESFVGMSKLVVENMEALFSNKPLVSPF 75
           GLDVFENEPEIP++LF  DN       A++THE+  G+S+LVV+N+EALFSNKPLVSPF
Sbjct: 272 GLDVFENEPEIPEELFNFDNVVLSPHVAVMTHETLEGLSRLVVDNLEALFSNKPLVSPF 330

[Close]

BLAST of CmoCh14G020580.1 vs. NCBI nr
Match: gi|659075398|ref|XP_008438122.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 19  RDTGLDVFENEPEIPKQLFKLDNGAIITH------ESFVGMSKLVVENMEALFSNKPLVS 77
           +  GLDVFE+EPEIPKQLF LDN  +  H      ES VG+++L  EN+EA FSNKPLVS
Sbjct: 264 KGAGLDVFEHEPEIPKQLFNLDNVVLSPHAAGTTTESIVGLTELAFENLEAFFSNKPLVS 323

The following BLAST results are available for this feature:

BLAST of CmoCh14G020580.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HPPR_PLESU	1.8e-07	50.00	Hydroxyphenylpyruvate reductase OS=Plectranthus scutellarioides GN=HPPR PE=1 SV=...	[more]
HPR3_ARATH	2.3e-07	46.55	Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 S...	[more]

BLAST of CmoCh14G020580.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L908_CUCSA	2.6e-13	68.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124900 PE=3 SV=1	[more]
A0A0A0L4C2_CUCSA	3.7e-12	60.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124920 PE=3 SV=1	[more]
A0A0A0L7K6_CUCSA	1.1e-11	62.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124910 PE=3 SV=1	[more]
B9IC39_POPTR	2.0e-10	57.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06940g PE=3 SV=1	[more]
A0A067H4Q9_CITSI	1.3e-09	57.63	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020160mg PE=3 SV=1	[more]

BLAST of CmoCh14G020580.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45630.2	8.2e-11	51.67	D-isomer specific 2-hydroxyacid dehydrogenase family protein	[more]
AT1G12550.1	1.3e-08	46.55	D-isomer specific 2-hydroxyacid dehydrogenase family protein	[more]
AT1G79870.1	7.2e-07	45.61	D-isomer specific 2-hydroxyacid dehydrogenase family protein	[more]

BLAST of CmoCh14G020580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077733\|ref\|XP_008439355.1\|	1.3e-13	71.67	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo]	[more]
gi\|659075382\|ref\|XP_008438113.1\|	2.2e-13	67.80	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo]	[more]
gi\|449433109\|ref\|XP_004134340.1\|	3.7e-13	68.33	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3 [Cucumis sativus]	[more]
gi\|778677348\|ref\|XP_004133892.2\|	1.1e-12	66.10	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis sativus]	[more]
gi\|659075398\|ref\|XP_008438122.1\|	2.4e-12	60.94	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G020580	CmoCh14G020580	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G020580.1	CmoCh14G020580.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G020580.1.exon.1	CmoCh14G020580.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G020580.1.CDS.1	CmoCh14G020580.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10996	2-HYDROXYACID DEHYDROGENASE-RELATED	coord: 22..76 score: 1.5
None	No IPR available	PANTHER	PTHR10996:SF155	D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE-LIKE PROTEIN-RELATED	coord: 22..76 score: 1.5