CmoCh14G020580 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G020580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	D-isomer specific 2-hydroxyacid dehydrogenase family protein
Location	Cmo_Chr14 : 15030230 .. 15030460 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATTCTGGGGTGCTGGGTGTCACAATCGCATCGCACTTCGAGCATGACCGTGACACTGGGCTGGATGTGTTTGAGAATGAACCCGAAATTCCGAAACAGCTCTTTAAACTAGATAATGGTGCTATCATAACACATGAATCTTTTGTGGGAATGTCTAAGTTGGTGGTGGAAAACATGGAGGCACTCTTCTCAAACAAACCTCTGGTGTCTCCCTTCATGGATTAG

mRNA sequence

ATGTTTGATTCTGGGGTGCTGGGTGTCACAATCGCATCGCACTTCGAGCATGACCGTGACACTGGGCTGGATGTGTTTGAGAATGAACCCGAAATTCCGAAACAGCTCTTTAAACTAGATAATGGTGCTATCATAACACATGAATCTTTTGTGGGAATGTCTAAGTTGGTGGTGGAAAACATGGAGGCACTCTTCTCAAACAAACCTCTGGTGTCTCCCTTCATGGATTAG

Coding sequence (CDS)

ATGTTTGATTCTGGGGTGCTGGGTGTCACAATCGCATCGCACTTCGAGCATGACCGTGACACTGGGCTGGATGTGTTTGAGAATGAACCCGAAATTCCGAAACAGCTCTTTAAACTAGATAATGGTGCTATCATAACACATGAATCTTTTGTGGGAATGTCTAAGTTGGTGGTGGAAAACATGGAGGCACTCTTCTCAAACAAACCTCTGGTGTCTCCCTTCATGGATTAG

Homology

[Close]

BLAST of CmoCh14G020580 vs. Swiss-Prot
Match: HPPR_PLESU (Hydroxyphenylpyruvate reductase OS=Plectranthus scutellarioides GN=HPPR PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDNGAIITH------ESFVGMSKLVVENMEALFSNKPLVSP 74
           GLDVFE EPE+P++LF L+N  ++ H      E+   M+ LVV N+EA FS KPL++P
Sbjct: 254 GLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTP 311

[Close]

BLAST of CmoCh14G020580 vs. Swiss-Prot
Match: HPR3_ARATH (Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-07
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSP 74
           GLDVFENEP +P++LF LDN       A+ T  S   ++++ + N++A FSN+PL+SP
Sbjct: 262 GLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKAFFSNRPLLSP 319

[Close]

BLAST of CmoCh14G020580 vs. TrEMBL
Match: A0A0A0L908_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124900 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 76
           GLDVFE EPEIPKQLF LDN       A+ THESFVG++KL VEN+EA FSNKPL+SP++
Sbjct: 265 GLDVFEFEPEIPKQLFTLDNVVLSPHTAVTTHESFVGIAKLAVENLEAFFSNKPLLSPYV 324

[Close]

BLAST of CmoCh14G020580 vs. TrEMBL
Match: A0A0A0L4C2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124920 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-12
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 19  RDTGLDVFENEPEIPKQLFKLDNG------AIITHESFVGMSKLVVENMEALFSNKPLVS 77
           +  GLDVFE+EPEIPKQLF LDN       A+ T ES  G+ +L +EN+EA FSNKPLVS
Sbjct: 264 KGAGLDVFEDEPEIPKQLFNLDNVVLSPHVAVTTTESIAGLIELALENLEAFFSNKPLVS 323

[Close]

BLAST of CmoCh14G020580 vs. TrEMBL
Match: A0A0A0L7K6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124910 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 77
           GLDVFENEP +P++LF LDN       A++T+ES V +SKLVV N+EA FSNKPLVSP +
Sbjct: 272 GLDVFENEPNVPEELFNLDNVVLSPHAAVMTYESKVELSKLVVNNLEAFFSNKPLVSPVV 331

[Close]

BLAST of CmoCh14G020580 vs. TrEMBL
Match: B9IC39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06940g PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 77
           GLDVFENEP++PK+LF+LDN       A+ T ESF+ + +LVV N+EA FSN PL+SP +
Sbjct: 278 GLDVFENEPDVPKELFELDNVVLSPHRAVFTSESFMALCELVVGNLEAFFSNTPLLSPVI 337

[Close]

BLAST of CmoCh14G020580 vs. TrEMBL
Match: A0A067H4Q9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020160mg PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPF 75
           GLDVFENEP++P+QLF LDN       A+ T ESF  + +L V N+EA FSNKPL++PF
Sbjct: 268 GLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF 326

[Close]

BLAST of CmoCh14G020580 vs. TAIR10
Match: AT2G45630.2 (AT2G45630.2 D-isomer specific 2-hydroxyacid dehydrogenase family protein)

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 76
           GLDVFE+EP +PK+LF+LDN       A +T E    + K+VV N+EA FSNKPL++P +
Sbjct: 279 GLDVFEDEPNVPKELFELDNVVFSPHSAFMTLEGLEELGKVVVGNIEAFFSNKPLLTPVL 338

[Close]

BLAST of CmoCh14G020580 vs. TAIR10
Match: AT1G12550.1 (AT1G12550.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-08
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSP 74
           GLDVFENEP +P++LF LDN       A+ T  S   ++++ + N++A FSN+PL+SP
Sbjct: 262 GLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALANLKAFFSNRPLLSP 319

[Close]

BLAST of CmoCh14G020580 vs. TAIR10
Match: AT1G79870.1 (AT1G79870.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein)

HSP 1 Score: 50.1 bits (118), Expect = 7.2e-07
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1


Query: 23  LDVFENEPEIPKQLFKLDNGAIITH------ESFVGMSKLVVENMEALFSNKPLVSP 74
           LDVFE EP +P++LF L+N  ++ H      E+   M+ LVV N+EA FS K L++P
Sbjct: 255 LDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLEAHFSGKSLLTP 311

[Close]

BLAST of CmoCh14G020580 vs. NCBI nr
Match: gi|659077733|ref|XP_008439355.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 76
           GLDVFE EPEIPKQLF LDN       AI THESF GM+KL VEN+EA FSNKPLVSP++
Sbjct: 262 GLDVFEFEPEIPKQLFTLDNVVLSPHAAITTHESFGGMAKLAVENLEAFFSNKPLVSPYL 321

[Close]

BLAST of CmoCh14G020580 vs. NCBI nr
Match: gi|659075382|ref|XP_008438113.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-13
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDNG------AIITHESFVGMSKLVVENMEALFSNKPLVSPF 75
           GLDVFENEPEIP++LF  DN       A++THE+ VG+S+LVV+N+EALFSNKPLVSPF
Sbjct: 270 GLDVFENEPEIPEELFNFDNVVLSPHVAVMTHETLVGLSRLVVDNLEALFSNKPLVSPF 328

[Close]

BLAST of CmoCh14G020580 vs. NCBI nr
Match: gi|449433109|ref|XP_004134340.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDN------GAIITHESFVGMSKLVVENMEALFSNKPLVSPFM 76
           GLDVFE EPEIPKQLF LDN       A+ THESFVG++KL VEN+EA FSNKPL+SP++
Sbjct: 265 GLDVFEFEPEIPKQLFTLDNVVLSPHTAVTTHESFVGIAKLAVENLEAFFSNKPLLSPYV 324

[Close]

BLAST of CmoCh14G020580 vs. NCBI nr
Match: gi|778677348|ref|XP_004133892.2| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 22  GLDVFENEPEIPKQLFKLDNG------AIITHESFVGMSKLVVENMEALFSNKPLVSPF 75
           GLDVFENEPEIP++LF  DN       A++THE+  G+S+LVV+N+EALFSNKPLVSPF
Sbjct: 272 GLDVFENEPEIPEELFNFDNVVLSPHVAVMTHETLEGLSRLVVDNLEALFSNKPLVSPF 330

[Close]

BLAST of CmoCh14G020580 vs. NCBI nr
Match: gi|659075398|ref|XP_008438122.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 19  RDTGLDVFENEPEIPKQLFKLDNGAIITH------ESFVGMSKLVVENMEALFSNKPLVS 77
           +  GLDVFE+EPEIPKQLF LDN  +  H      ES VG+++L  EN+EA FSNKPLVS
Sbjct: 264 KGAGLDVFEHEPEIPKQLFNLDNVVLSPHAAGTTTESIVGLTELAFENLEAFFSNKPLVS 323

The following BLAST results are available for this feature:

BLAST of CmoCh14G020580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HPPR_PLESU	1.8e-07	50.00	Hydroxyphenylpyruvate reductase OS=Plectranthus scutellarioides GN=HPPR PE=1 SV=...	[more]
HPR3_ARATH	2.3e-07	46.55	Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 S...	[more]

BLAST of CmoCh14G020580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L908_CUCSA	2.6e-13	68.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124900 PE=3 SV=1	[more]
A0A0A0L4C2_CUCSA	3.7e-12	60.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124920 PE=3 SV=1	[more]
A0A0A0L7K6_CUCSA	1.1e-11	62.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124910 PE=3 SV=1	[more]
B9IC39_POPTR	2.0e-10	57.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06940g PE=3 SV=1	[more]
A0A067H4Q9_CITSI	1.3e-09	57.63	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020160mg PE=3 SV=1	[more]

BLAST of CmoCh14G020580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45630.2	8.2e-11	51.67	D-isomer specific 2-hydroxyacid dehydrogenase family protein	[more]
AT1G12550.1	1.3e-08	46.55	D-isomer specific 2-hydroxyacid dehydrogenase family protein	[more]
AT1G79870.1	7.2e-07	45.61	D-isomer specific 2-hydroxyacid dehydrogenase family protein	[more]

BLAST of CmoCh14G020580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077733\|ref\|XP_008439355.1\|	1.3e-13	71.67	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo]	[more]
gi\|659075382\|ref\|XP_008438113.1\|	2.2e-13	67.80	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo]	[more]
gi\|449433109\|ref\|XP_004134340.1\|	3.7e-13	68.33	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3 [Cucumis sativus]	[more]
gi\|778677348\|ref\|XP_004133892.2\|	1.1e-12	66.10	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis sativus]	[more]
gi\|659075398\|ref\|XP_008438122.1\|	2.4e-12	60.94	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G020580.1	CmoCh14G020580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10996	2-HYDROXYACID DEHYDROGENASE-RELATED	coord: 22..76 score: 1.5
None	No IPR available	PANTHER	PTHR10996:SF155	D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE-LIKE PROTEIN-RELATED	coord: 22..76 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G020580	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G020580	Watermelon (Charleston Gray)	cmowcgB225
CmoCh14G020580	Watermelon (97103) v1	cmowmB231
CmoCh14G020580	Watermelon (97103) v1	cmowmB235
CmoCh14G020580	Watermelon (97103) v1	cmowmB241
CmoCh14G020580	Cucurbita pepo (Zucchini)	cmocpeB223
CmoCh14G020580	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G020580	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G020580	Bottle gourd (USVL1VR-Ls)	cmolsiB211
CmoCh14G020580	Bottle gourd (USVL1VR-Ls)	cmolsiB233
CmoCh14G020580	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G020580	Cucumber (Gy14) v2	cgybcmoB571
CmoCh14G020580	Cucumber (Gy14) v2	cgybcmoB717
CmoCh14G020580	Melon (DHL92) v3.6.1	cmomedB221
CmoCh14G020580	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G020580	Silver-seed gourd	carcmoB0319
CmoCh14G020580	Silver-seed gourd	carcmoB0659
CmoCh14G020580	Silver-seed gourd	carcmoB0850
CmoCh14G020580	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G020580	Cucumber (Chinese Long) v3	cmocucB0299
CmoCh14G020580	Cucumber (Chinese Long) v3	cmocucB0308
CmoCh14G020580	Watermelon (97103) v2	cmowmbB228
CmoCh14G020580	Watermelon (97103) v2	cmowmbB243
CmoCh14G020580	Watermelon (97103) v2	cmowmbB249
CmoCh14G020580	Wax gourd	cmowgoB0308
CmoCh14G020580	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh14G020580	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh14G020580	Cucurbita moschata (Rifu)	cmocmoB235
CmoCh14G020580	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G020580	Cucumber (Gy14) v1	cgycmoB0823
CmoCh14G020580	Cucumber (Gy14) v1	cgycmoB0992
CmoCh14G020580	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G020580	Cucurbita maxima (Rimu)	cmacmoB350
CmoCh14G020580	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G020580	Cucurbita maxima (Rimu)	cmacmoB885
CmoCh14G020580	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G020580	Wild cucumber (PI 183967)	cmocpiB258
CmoCh14G020580	Wild cucumber (PI 183967)	cmocpiB263
CmoCh14G020580	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G020580	Cucumber (Chinese Long) v2	cmocuB257
CmoCh14G020580	Melon (DHL92) v3.5.1	cmomeB197
CmoCh14G020580	Melon (DHL92) v3.5.1	cmomeB199
CmoCh14G020580	Melon (DHL92) v3.5.1	cmomeB230