CmoCh14G020430.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G020430.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lateral organ boundaries (LOB) domain family protein
Location	Cmo_Chr14 : 14933551 .. 14934653 (+)
Sequence length	1015

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAAATCCATACTTGTCTTGTTCTTCCAGTAAGCCTTGCTTAGCTTCTGATGAAAGAACGGCAAGAAAGCAAGGCCGAGATGAGCTCGAGGCACGGCGGTGGAGGTTGCAAGGAGGGCAATGGTGGTAGTAGCAGCAATGGCAGCGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGAAGGAAGTGTACACCGGAGTGTATATTTGCACCTTACTTTGACTCTGAACAAGGCACGACTCATTTTGCAGCCGTGCACAAAGTGTTCGGAGCTAGTAATGTGTCGAAGCTGCTATTGCATATTCCTGAACACAAGCGCCTCGATGCAGCTATAACCATATGCTACGAGGCACAAGCTCGTGTTAGAGAGCCAGTTTTTGGTTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGTAAAACAAAATTAGCTGAAGCTCTATTCGATAACAATTTGGCTTTCGAAAATGTAAACTAATTCGAGTGCCATACATTATTTTTTAGGCTGCGAGGTTGCAAGTAGAGCTCTCATACTTGCAAGCGTACCTAGCAGCATCTGAGCTTTCAAGAACCGCACCACATCCACAGGCACAGCCACAAGATCTGGTCAAGCCAACAATACCCTCAATTGTAAACCTTCCATTAGATTGCCCTTCTTTGCCTTCTGCTGCATCAGATCTTTCACTGCTTCTCGATCCTGTGGAGCAAGCTTCGCCGGCAAAGTTGCAGTCTCCATTGGAATTCTGTCAAATTAGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAGATTGTCCAAAAACAACTCTCCACGATGCAACGCATTGGTGCCTCGCTATTTCCCTACGTCCCTAAACGAGCCTAACTCGTGATTGGACTGCTAATAATCTCAGTGTTCTTCCTGGCTGATCAATAAGTTAAAACTTCAGCTTACTTATATCATGTTTTGATCATCATGAAGGTTTCAATAACAAGCTTGTAAAACTCTTTTCTCATCTATTTCTATTTGAAAATTATGCAACCACTACCCTTAAAAGCAGAAATGAAGCAGACATTTGTGTTCTTTATACTTCAATTCAATGGGAAAAGTGAACTTTGCAT

mRNA sequence

TATAAATCCATACTTGTCTTGTTCTTCCAGTAAGCCTTGCTTAGCTTCTGATGAAAGAACGGCAAGAAAGCAAGGCCGAGATGAGCTCGAGGCACGGCGGTGGAGGTTGCAAGGAGGGCAATGGTGGTAGTAGCAGCAATGGCAGCGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGAAGGAAGTGTACACCGGAGTGTATATTTGCACCTTACTTTGACTCTGAACAAGGCACGACTCATTTTGCAGCCGTGCACAAAGTGTTCGGAGCTAGTAATGTGTCGAAGCTGCTATTGCATATTCCTGAACACAAGCGCCTCGATGCAGCTATAACCATATGCTACGAGGCACAAGCTCGTGTTAGAGAGCCAGTTTTTGGTTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGCTGCGAGGTTGCAAGTAGAGCTCTCATACTTGCAAGCGTACCTAGCAGCATCTGAGCTTTCAAGAACCGCACCACATCCACAGGCACAGCCACAAGATCTGGTCAAGCCAACAATACCCTCAATTGTAAACCTTCCATTAGATTGCCCTTCTTTGCCTTCTGCTGCATCAGATCTTTCACTGCTTCTCGATCCTGTGGAGCAAGCTTCGCCGGCAAAGTTGCAGTCTCCATTGGAATTCTGTCAAATTAGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAGATTGTCCAAAAACAACTCTCCACGATGCAACGCATTGGTGCCTCGCTATTTCCCTACGTCCCTAAACGAGCCTAACTCGTGATTGGACTGCTAATAATCTCAGTGTTCTTCCTGGCTGATCAATAAGTTAAAACTTCAGCTTACTTATATCATGTTTTGATCATCATGAAGGTTTCAATAACAAGCTTGTAAAACTCTTTTCTCATCTATTTCTATTTGAAAATTATGCAACCACTACCCTTAAAAGCAGAAATGAAGCAGACATTTGTGTTCTTTATACTTCAATTCAATGGGAAAAGTGAACTTTGCAT

Coding sequence (CDS)

ATGAAAGAACGGCAAGAAAGCAAGGCCGAGATGAGCTCGAGGCACGGCGGTGGAGGTTGCAAGGAGGGCAATGGTGGTAGTAGCAGCAATGGCAGCGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGAAGGAAGTGTACACCGGAGTGTATATTTGCACCTTACTTTGACTCTGAACAAGGCACGACTCATTTTGCAGCCGTGCACAAAGTGTTCGGAGCTAGTAATGTGTCGAAGCTGCTATTGCATATTCCTGAACACAAGCGCCTCGATGCAGCTATAACCATATGCTACGAGGCACAAGCTCGTGTTAGAGAGCCAGTTTTTGGTTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGCTGCGAGGTTGCAAGTAGAGCTCTCATACTTGCAAGCGTACCTAGCAGCATCTGAGCTTTCAAGAACCGCACCACATCCACAGGCACAGCCACAAGATCTGGTCAAGCCAACAATACCCTCAATTGTAAACCTTCCATTAGATTGCCCTTCTTTGCCTTCTGCTGCATCAGATCTTTCACTGCTTCTCGATCCTGTGGAGCAAGCTTCGCCGGCAAAGTTGCAGTCTCCATTGGAATTCTGTCAAATTAGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAGATTGTCCAAAAACAACTCTCCACGATGCAACGCATTGGTGCCTCGCTATTTCCCTACGTCCCTAAACGAGCCTAA

Homology

[Close]

BLAST of CmoCh14G020430.1 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-54
Identity = 115/184 (62.50%), Postives = 132/184 (71.74%), Query Frame = 1


Query: 16  GGGGC----KEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKV 75
           GGGGC      G GGSS  G GGPCGACKFLRRKC P CIFAPYFDSEQG+ +FAAVHKV
Sbjct: 14  GGGGCGGGGSSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKV 73

Query: 76  FGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSY 135
           FGASNVSKLLLHIP H+R DA +TICYEAQAR+R+P++GCVAHIFALQQQ   LQ E+SY
Sbjct: 74  FGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSY 133

Query: 136 LQAYLAASEL----SRTAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAASDLSLLLDPV 192
           LQA+LA+ EL    +R  P PQ QP     P   +I +LP     LPS   DL+ + D  
Sbjct: 134 LQAHLASLELPQPQTRPQPMPQPQPLFFTPPPPLAITDLPASVSPLPS-TYDLASIFDQT 193

[Close]

BLAST of CmoCh14G020430.1 vs. Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.7e-49
Identity = 105/177 (59.32%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 23  GNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLL 82
           GN  SSS G GGPCGACKFLRRKC   CIFAPYFDSEQG  HFAAVHKVFGASNVSKLL 
Sbjct: 5   GNPSSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLH 64

Query: 83  HIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELS 142
           H+PEHKR DA ++IC+EAQAR+R+P++GCV+HI +LQQQ   LQ ELSYLQA+LA  EL 
Sbjct: 65  HVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLATLEL- 124

Query: 143 RTAPHPQAQPQDLVKPTIPSIVNLPL-DCPSLPSAASDLSLLLDPVEQASPAKLQSP 199
                PQ QP  +   +  S+  L + D P++  +  DLS + +PV  ++ A  Q P
Sbjct: 125 -----PQPQPPQVPVSSSGSLQALSITDLPTISPSVYDLSSIFEPVMSSTWAMQQQP 175

[Close]

BLAST of CmoCh14G020430.1 vs. Swiss-Prot
Match: LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-38
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 23  GNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLL 82
           GN      G  GPCGACKFLRRKC   C+FAPYFD+EQGT  FAAVHKVFGASN SK+LL
Sbjct: 4   GNLNGGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLL 63

Query: 83  HIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELS 142
            +P HKRLDA +T+CYEA AR+R+PV+G V H+F+LQ Q   LQ EL+++QA      LS
Sbjct: 64  RLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQA-----RLS 123

Query: 143 RTAPHPQAQPQDLVKPT 160
                P   PQ +  P+
Sbjct: 124 TIQRFPLQSPQQMQPPS 135

[Close]

BLAST of CmoCh14G020430.1 vs. Swiss-Prot
Match: LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-38
Identity = 88/179 (49.16%), Postives = 116/179 (64.80%), Query Frame = 1


Query: 28  SSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLHIPEH 87
           S+ G GGPCGACKFLRRKC  +C+FAPYFDS +GT+HF AVHKVFGASN SKLL+ IP  
Sbjct: 4   STTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPAS 63

Query: 88  KRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELSRTAPH 147
           +RLDA +T+ YEA AR+R+PV+GCV HIFALQ Q   LQ EL+Y+Q     ++LS     
Sbjct: 64  RRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQ-----TQLSTLQGL 123

Query: 148 PQAQPQDLVKPTIPSIVNLPL-----DCPSLPSAASDLSLLLDPVEQASPAK-LQSPLE 201
           P    Q+  +    S  N+PL        ++ S++S +  +    EQ  P + ++ P E
Sbjct: 124 PPPNSQNNSRTEAASSSNVPLISSVDSKDNMSSSSSHIPCMSQQQEQEQPKEAIEVPTE 177

[Close]

BLAST of CmoCh14G020430.1 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-37
Identity = 74/119 (62.18%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 24  NGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLH 83
           +G  ++ G+G PCGACKFLRRKC  +CIFAPYF SEQG   FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 84  IPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELS 143
           +P H R +A +TI YEAQAR+ +PV+GCV+HIFALQQQ A LQ ++  ++A +A  + S
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTS 122

[Close]

BLAST of CmoCh14G020430.1 vs. TrEMBL
Match: A0A0A0L4D4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126090 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 6.3e-98
Identity = 193/233 (82.83%), Postives = 206/233 (88.41%), Query Frame = 1


Query: 11  MSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 70
           MSSR  GG C +G GG S NGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHK
Sbjct: 1   MSSRRSGGSCTKGKGGGS-NGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHK 60

Query: 71  VFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELS 130
           VFGASNVSK+LLHIPEHKRLDAAITICYEAQARVREPV GCV+HIFALQQQAARLQ+E+S
Sbjct: 61  VFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEIS 120

Query: 131 YLQAYLAASELSRTAPHPQAQPQDLV-KPTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQ 190
           YLQAYLA SEL R+APH QAQP  LV KPT+ SI++LP DCPS P A SDLSLLLDPVEQ
Sbjct: 121 YLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFP-AESDLSLLLDPVEQ 180

Query: 191 ASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPKRA 243
            S  KLQSPLE  QI SNNFPSMGSIDQQ+VQKQLS+MQRIGASLFP +PKRA
Sbjct: 181 VSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231

[Close]

BLAST of CmoCh14G020430.1 vs. TrEMBL
Match: B9RDE1_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1612280 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.3e-54
Identity = 123/178 (69.10%), Postives = 134/178 (75.28%), Query Frame = 1


Query: 16  GGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGAS 75
           GG G   G GG  S+ SGGPCGACKFLRRKC P CIFAPYFDSEQG  HFAAVHKVFGAS
Sbjct: 11  GGSG---GVGGGGSSSSGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGAS 70

Query: 76  NVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAY 135
           NVSKLLLHIP HKRLDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ ELSYLQA+
Sbjct: 71  NVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 130

Query: 136 LAASELSRTAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQASPA 194
           LA  EL   +P P   PQ LV P   SI +LP    S+P A  DLS L DP+ Q SP+
Sbjct: 131 LATLEL--PSPPPPPPPQSLVPPPPLSIADLP-SASSVP-ATYDLSSLFDPMTQPSPS 181

[Close]

BLAST of CmoCh14G020430.1 vs. TrEMBL
Match: A0A0D2RDP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G114400 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.6e-54
Identity = 130/231 (56.28%), Postives = 147/231 (63.64%), Query Frame = 1


Query: 17  GGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASN 76
           GG      GG+   G GGPCGACKFLRRKC P CIFAPYFDSEQG  HFAAVHKVFGASN
Sbjct: 9   GGAAGSSTGGAVGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASN 68

Query: 77  VSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYL 136
           VSKLLLH+P HKRLDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ ELSYLQA+L
Sbjct: 69  VSKLLLHVPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHL 128

Query: 137 AASELSR---TAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQASPA 196
           A  EL      +P P    Q L++P        PL    LP A  DLS L DP+ Q S A
Sbjct: 129 ATLELPTPPLPSPPPPPPQQTLMEPP-------PLSISDLPPATYDLSTLFDPMVQPSWA 188

Query: 197 KLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQ----RIGASLFPYVPK 241
             Q      QI   +  S+GS D Q + ++L   Q    R+ AS  P   K
Sbjct: 189 MQQR-----QINQFDSSSLGSGDLQALARELLHRQGSPPRLPASPSPSFSK 227

[Close]

BLAST of CmoCh14G020430.1 vs. TrEMBL
Match: A0A067KAC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14515 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.6e-54
Identity = 131/225 (58.22%), Postives = 152/225 (67.56%), Query Frame = 1


Query: 9   AEMSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAV 68
           A  SS  G GG   G GGSSS+G  GPCGACKFLRRKC P CIFAPYFDSEQG  HFAAV
Sbjct: 5   ANPSSSGGSGG---GGGGSSSSGGSGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAV 64

Query: 69  HKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVE 128
           HKVFGASNVSKLLLHIP HKRLDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ E
Sbjct: 65  HKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAE 124

Query: 129 LSYLQAYLAASELSRTAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAAS-----DLSLL 188
           L+YLQA+LA  E+  + P P   P  LV P       LPL    LPSA+S     DLS L
Sbjct: 125 LTYLQAHLATLEVP-SPPPPPPPPPALVTP-------LPLSISDLPSASSMPATYDLSSL 184

Query: 189 LDPVEQAS---PAKLQSPLEFCQIRSNNFPSM-GSIDQQIVQKQL 225
            DP+ Q S     +   P +F    +++ P++ G  D Q + ++L
Sbjct: 185 FDPITQPSWTMQQRQMDPRQFGGSSTSSSPAISGGGDLQSLAREL 218

[Close]

BLAST of CmoCh14G020430.1 vs. TrEMBL
Match: B9GPH4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15000g PE=4 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 9.6e-54
Identity = 121/181 (66.85%), Postives = 132/181 (72.93%), Query Frame = 1


Query: 11  MSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 70
           ++S  GGG    G  G SS G GGPCGACKFLRRKC P CIFAPYFDSEQG  HFAAVHK
Sbjct: 9   INSGVGGGSSGGGGAGGSSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHK 68

Query: 71  VFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELS 130
           VFGASNVSKLLLHIP HKR DA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ ELS
Sbjct: 69  VFGASNVSKLLLHIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELS 128

Query: 131 YLQAYLAASELSRTAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQA 190
           YLQA+LAA E+    P P   P  LV     SI +LP    S+P AA DLS L DP+ Q 
Sbjct: 129 YLQAHLAAMEVPSPPPPP---PPALVTSPPFSIADLP-SASSIPGAAYDLSSLFDPMVQP 185

Query: 191 S 192
           S
Sbjct: 189 S 185

[Close]

BLAST of CmoCh14G020430.1 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18)

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-55
Identity = 115/184 (62.50%), Postives = 132/184 (71.74%), Query Frame = 1


Query: 16  GGGGC----KEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKV 75
           GGGGC      G GGSS  G GGPCGACKFLRRKC P CIFAPYFDSEQG+ +FAAVHKV
Sbjct: 14  GGGGCGGGGSSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKV 73

Query: 76  FGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSY 135
           FGASNVSKLLLHIP H+R DA +TICYEAQAR+R+P++GCVAHIFALQQQ   LQ E+SY
Sbjct: 74  FGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSY 133

Query: 136 LQAYLAASEL----SRTAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAASDLSLLLDPV 192
           LQA+LA+ EL    +R  P PQ QP     P   +I +LP     LPS   DL+ + D  
Sbjct: 134 LQAHLASLELPQPQTRPQPMPQPQPLFFTPPPPLAITDLPASVSPLPS-TYDLASIFDQT 193

[Close]

BLAST of CmoCh14G020430.1 vs. TAIR10
Match: AT4G00220.1 (AT4G00220.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-50
Identity = 105/177 (59.32%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 23  GNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLL 82
           GN  SSS G GGPCGACKFLRRKC   CIFAPYFDSEQG  HFAAVHKVFGASNVSKLL 
Sbjct: 5   GNPSSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLH 64

Query: 83  HIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELS 142
           H+PEHKR DA ++IC+EAQAR+R+P++GCV+HI +LQQQ   LQ ELSYLQA+LA  EL 
Sbjct: 65  HVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLATLEL- 124

Query: 143 RTAPHPQAQPQDLVKPTIPSIVNLPL-DCPSLPSAASDLSLLLDPVEQASPAKLQSP 199
                PQ QP  +   +  S+  L + D P++  +  DLS + +PV  ++ A  Q P
Sbjct: 125 -----PQPQPPQVPVSSSGSLQALSITDLPTISPSVYDLSSIFEPVMSSTWAMQQQP 175

[Close]

BLAST of CmoCh14G020430.1 vs. TAIR10
Match: AT2G45410.1 (AT2G45410.1 LOB domain-containing protein 19)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 79/137 (57.66%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 23  GNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLL 82
           GN      G  GPCGACKFLRRKC   C+FAPYFD+EQGT  FAAVHKVFGASN SK+LL
Sbjct: 4   GNLNGGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLL 63

Query: 83  HIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELS 142
            +P HKRLDA +T+CYEA AR+R+PV+G V H+F+LQ Q   LQ EL+++QA      LS
Sbjct: 64  RLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQA-----RLS 123

Query: 143 RTAPHPQAQPQDLVKPT 160
                P   PQ +  P+
Sbjct: 124 TIQRFPLQSPQQMQPPS 135

[Close]

BLAST of CmoCh14G020430.1 vs. TAIR10
Match: AT4G00210.1 (AT4G00210.1 LOB domain-containing protein 31)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 88/179 (49.16%), Postives = 116/179 (64.80%), Query Frame = 1


Query: 28  SSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLHIPEH 87
           S+ G GGPCGACKFLRRKC  +C+FAPYFDS +GT+HF AVHKVFGASN SKLL+ IP  
Sbjct: 4   STTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPAS 63

Query: 88  KRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELSRTAPH 147
           +RLDA +T+ YEA AR+R+PV+GCV HIFALQ Q   LQ EL+Y+Q     ++LS     
Sbjct: 64  RRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQ-----TQLSTLQGL 123

Query: 148 PQAQPQDLVKPTIPSIVNLPL-----DCPSLPSAASDLSLLLDPVEQASPAK-LQSPLE 201
           P    Q+  +    S  N+PL        ++ S++S +  +    EQ  P + ++ P E
Sbjct: 124 PPPNSQNNSRTEAASSSNVPLISSVDSKDNMSSSSSHIPCMSQQQEQEQPKEAIEVPTE 177

[Close]

BLAST of CmoCh14G020430.1 vs. TAIR10
Match: AT2G42430.1 (AT2G42430.1 lateral organ boundaries-domain 16)

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-38
Identity = 74/119 (62.18%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 24  NGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLH 83
           +G  ++ G+G PCGACKFLRRKC  +CIFAPYF SEQG   FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 84  IPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELS 143
           +P H R +A +TI YEAQAR+ +PV+GCV+HIFALQQQ A LQ ++  ++A +A  + S
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTS 122

[Close]

BLAST of CmoCh14G020430.1 vs. NCBI nr
Match: gi|449433121|ref|XP_004134346.1| (PREDICTED: LOB domain-containing protein 18 [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 9.1e-98
Identity = 193/233 (82.83%), Postives = 206/233 (88.41%), Query Frame = 1


Query: 11  MSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 70
           MSSR  GG C +G GG S NGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHK
Sbjct: 1   MSSRRSGGSCTKGKGGGS-NGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHK 60

Query: 71  VFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELS 130
           VFGASNVSK+LLHIPEHKRLDAAITICYEAQARVREPV GCV+HIFALQQQAARLQ+E+S
Sbjct: 61  VFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEIS 120

Query: 131 YLQAYLAASELSRTAPHPQAQPQDLV-KPTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQ 190
           YLQAYLA SEL R+APH QAQP  LV KPT+ SI++LP DCPS P A SDLSLLLDPVEQ
Sbjct: 121 YLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFP-AESDLSLLLDPVEQ 180

Query: 191 ASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPKRA 243
            S  KLQSPLE  QI SNNFPSMGSIDQQ+VQKQLS+MQRIGASLFP +PKRA
Sbjct: 181 VSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231

[Close]

BLAST of CmoCh14G020430.1 vs. NCBI nr
Match: gi|659075449|ref|XP_008438149.1| (PREDICTED: LOB domain-containing protein 18 [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 3.5e-97
Identity = 195/233 (83.69%), Postives = 204/233 (87.55%), Query Frame = 1


Query: 11  MSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 70
           MSSR   G C +G GG S NGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK
Sbjct: 1   MSSRRSSGSCTKGKGGGS-NGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 60

Query: 71  VFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELS 130
           VFGASNVSK+LLHIPEHKRLDAAITICYEAQARVREPV GCVAHIFALQQQAARLQ+E+S
Sbjct: 61  VFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEIS 120

Query: 131 YLQAYLAASELSRTAPHPQAQPQDLV-KPTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQ 190
           YLQ YLA SEL R APH QAQP  LV KPT+ SIV+LP DCPS P A SDLSLLLDPVEQ
Sbjct: 121 YLQGYLATSELPRPAPHLQAQPPALVKKPTLSSIVSLPSDCPSFP-AESDLSLLLDPVEQ 180

Query: 191 ASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPKRA 243
           AS  KLQSPLE  QI SNNFPSM SIDQQ+VQKQLS+MQRIGASLFP VPKR+
Sbjct: 181 ASQEKLQSPLESYQIGSNNFPSMVSIDQQVVQKQLSSMQRIGASLFPNVPKRS 231

[Close]

BLAST of CmoCh14G020430.1 vs. NCBI nr
Match: gi|255541332|ref|XP_002511730.1| (PREDICTED: LOB domain-containing protein 18 [Ricinus communis])

HSP 1 Score: 219.9 bits (559), Expect = 4.7e-54
Identity = 123/178 (69.10%), Postives = 134/178 (75.28%), Query Frame = 1


Query: 16  GGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGAS 75
           GG G   G GG  S+ SGGPCGACKFLRRKC P CIFAPYFDSEQG  HFAAVHKVFGAS
Sbjct: 11  GGSG---GVGGGGSSSSGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGAS 70

Query: 76  NVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAY 135
           NVSKLLLHIP HKRLDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ ELSYLQA+
Sbjct: 71  NVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAH 130

Query: 136 LAASELSRTAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQASPA 194
           LA  EL   +P P   PQ LV P   SI +LP    S+P A  DLS L DP+ Q SP+
Sbjct: 131 LATLEL--PSPPPPPPPQSLVPPPPLSIADLP-SASSVP-ATYDLSSLFDPMTQPSPS 181

[Close]

BLAST of CmoCh14G020430.1 vs. NCBI nr
Match: gi|698498904|ref|XP_009795320.1| (PREDICTED: LOB domain-containing protein 30 [Nicotiana sylvestris])

HSP 1 Score: 219.2 bits (557), Expect = 8.1e-54
Identity = 126/193 (65.28%), Postives = 136/193 (70.47%), Query Frame = 1


Query: 16  GGGGCKEGNGGSSSNGSG--------GPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAA 75
           GGGG   G  GSSS G G        GPCGACKFLRRKC   CIFAPYFDSEQG  HFAA
Sbjct: 18  GGGGVGGGTSGSSSTGGGGAGGGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAA 77

Query: 76  VHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQV 135
           VHKVFGASNVSKLLLHIP HKRLDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ 
Sbjct: 78  VHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQA 137

Query: 136 ELSYLQAYLAASELSRTAPHPQA-QPQDLVKP---TIPSIVNLPLDCPSLPSAASDLSLL 195
           ELSYLQA+LA  EL    P P + QPQ L+ P      SI +LP   PS+  AA DLS L
Sbjct: 138 ELSYLQAHLATLELPTPPPQPPSQQPQTLLPPQPAAALSITDLPTAGPSILPAAYDLSSL 197

Query: 196 LDPVEQASPAKLQ 197
            DP+ Q S A  Q
Sbjct: 198 FDPMVQPSWAMQQ 210

[Close]

BLAST of CmoCh14G020430.1 vs. NCBI nr
Match: gi|1012025631|ref|XP_015950854.1| (PREDICTED: LOB domain-containing protein 18 [Arachis duranensis])

HSP 1 Score: 219.2 bits (557), Expect = 8.1e-54
Identity = 120/193 (62.18%), Postives = 136/193 (70.47%), Query Frame = 1


Query: 13  SRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVF 72
           S  GGGG    +GG  S+G GGPCGACKFLRRKC P CIFAPYFDSEQG THFAAVHKVF
Sbjct: 10  SPSGGGGGGSSSGGGGSSGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGATHFAAVHKVF 69

Query: 73  GASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYL 132
           GASNVSKLL++IP HKRLDA +TICYEAQAR+R+PV+GCVAHIFALQQQ   LQ ELSYL
Sbjct: 70  GASNVSKLLMNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQIVNLQAELSYL 129

Query: 133 QAYLAASELSRTAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAAS-----DLSLLLDPV 192
           Q YLA  EL      P   PQ  + P   SI +LP   P+  S A+     DLS L +P+
Sbjct: 130 QGYLATLELPHPPQLPPTPPQPTLAPPTLSISDLPPPHPTPASTATVPITYDLSSLFEPM 189

Query: 193 EQASPAKLQSPLE 201
            Q S A    P++
Sbjct: 190 AQTSWAMHNRPID 202

The following BLAST results are available for this feature:

BLAST of CmoCh14G020430.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD18_ARATH	2.8e-54	62.50	LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2	[more]
LBD30_ARATH	2.7e-49	59.32	LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1	[more]
LBD19_ARATH	2.8e-38	57.66	LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1	[more]
LBD31_ARATH	2.8e-38	49.16	LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2	[more]
LBD16_ARATH	1.8e-37	62.18	LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1	[more]

BLAST of CmoCh14G020430.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D4_CUCSA	6.3e-98	82.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126090 PE=4 SV=1	[more]
B9RDE1_RICCO	3.3e-54	69.10	LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1612280 PE=4...	[more]
A0A0D2RDP5_GOSRA	9.6e-54	56.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G114400 PE=4 SV=1	[more]
A0A067KAC7_JATCU	9.6e-54	58.22	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14515 PE=4 SV=1	[more]
B9GPH4_POPTR	9.6e-54	66.85	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15000g PE=4 SV=2	[more]

BLAST of CmoCh14G020430.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45420.1	1.6e-55	62.50	LOB domain-containing protein 18	[more]
AT4G00220.1	1.5e-50	59.32	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45410.1	1.6e-39	57.66	LOB domain-containing protein 19	[more]
AT4G00210.1	1.6e-39	49.16	LOB domain-containing protein 31	[more]
AT2G42430.1	1.0e-38	62.18	lateral organ boundaries-domain 16	[more]

BLAST of CmoCh14G020430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433121\|ref\|XP_004134346.1\|	9.1e-98	82.83	PREDICTED: LOB domain-containing protein 18 [Cucumis sativus]	[more]
gi\|659075449\|ref\|XP_008438149.1\|	3.5e-97	83.69	PREDICTED: LOB domain-containing protein 18 [Cucumis melo]	[more]
gi\|255541332\|ref\|XP_002511730.1\|	4.7e-54	69.10	PREDICTED: LOB domain-containing protein 18 [Ricinus communis]	[more]
gi\|698498904\|ref\|XP_009795320.1\|	8.1e-54	65.28	PREDICTED: LOB domain-containing protein 30 [Nicotiana sylvestris]	[more]
gi\|1012025631\|ref\|XP_015950854.1\|	8.1e-54	62.18	PREDICTED: LOB domain-containing protein 18 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045010	actin nucleation
biological_process	GO:0007155	cell adhesion
biological_process	GO:0044036	cell wall macromolecule metabolic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0010311	lateral root formation
biological_process	GO:0048765	root hair cell differentiation
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0010089	xylem development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G020430	CmoCh14G020430	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G020430.1	CmoCh14G020430.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G020430.1.exon.2	CmoCh14G020430.1.exon.2	exon
CmoCh14G020430.1.exon.1	CmoCh14G020430.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G020430.1.five_prime_UTR.1	CmoCh14G020430.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G020430.1.CDS.1	CmoCh14G020430.1.CDS.1	CDS
CmoCh14G020430.1.CDS.2	CmoCh14G020430.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G020430.1.three_prime_UTR.1	CmoCh14G020430.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 35..133 score: 4.8
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 34..136 score: 23
None	No IPR available	PANTHER	PTHR31529	FAMILY NOT NAMED	coord: 8..196 score: 5.1
None	No IPR available	PANTHER	PTHR31529:SF3	LOB DOMAIN-CONTAINING PROTEIN 18-RELATED	coord: 8..196 score: 5.1