CmoCh14G019080.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G019080.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box family protein
Location	Cmo_Chr14 : 14206638 .. 14209727 (+)
Sequence length	748

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTGGGTTTCTATTTTGCAACCGCCATTTCCTTAGCAATGTCGGCCAGATCACAATGCTAATCGCCGATCGCGCCATCCTCTCCAAAACCCTTTTCGCCTCTTGAGCTTTGAATTTATGGCGCAAAGTGACTTCCTCCGGCCGCCGATGAAAGCAAGGAAGAAGAAGAAGAAGCGAGAGAGTGTCTCGGATGAACAAGGGCAACAAAATGGAACCCGTAATGAACTTCTCCAAGATCCTTTCGAGGTTTTAGGTCCTGATCTATTAATGACGATACTTAGCTACGTTGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTGGCTTCCAGCGATCGCCTATGGAATTCGAAGGTCAGCGTCTTCACTCCGTTAATTCGTTTATGTTATGGTGCTTGTGATTAAATTCGATTCTCTGGAATTGGATTTTGGTATTTGATCTTCTGTTGGTTGTGGTAATTGTTTTCCCTGTGCAAATGGAGTCGTTCACTCGTTTTTGCAATTAGAAAATCGTTTCGTTTGTGTCGAACCGAGGTCCTTATTCTGTGGCTTTCACTTCTATTTTGTTTCACGTACTTATCTTCTCTCTCGTCGGATTTGAATCTTAAATTTATGTAGCCTGTGGTTTTTTCTGCTGAATTCAGCTTTTTCTACCTAGATTGATCATAACAAACTGCAGTTAGTGGATTTTTTGTTCGACCTCTCATGTTAATTTGAATTATTTCTCTCGGTTGTTGAAAACTCATCTTCAAATCATTTCCTCGACTCTTTCTAAGAGTGATATCCACATTTCTATGGTAAAAAGTGTTCCAAGCCTGTTAAAATTATGAGGTAGATAATCAAAATCGATGCAAGTGTTTCTGGGAGAAGTATGTCAAGAAAACAAGTGCTGTACTTACTAGAAAAGTCATTCCAAGATGCGGAAGCTTGACATCATGAAATCCTTAGTAGAAATTCTGAGGTTATCCTATCTTGGTTTCACCCTTCGATAGATACGAAATTGTATGTGCATAGTTTTGACCTATATCCGTCTCTATGTTCCTGCCCAGAAGGTGTGTGTATTTTACAACACAATGTCAAGTGCTTGTGTAGGTGTGTTCGAAAGATGCATTGTAGATTATTTTCTAAAATTCATGTCTTCTTTTAAGCTTTTAGAAAATATTTGGAATTTGAATATACGTTTTAACTTATTTGTTTAGATGCAAATATTAGATGTTATATGAACAAGGATTGAAGTTGAAGCCAAGAAATTCACATCCTTCTTTCTGGATAGCTCATTCCTGGTTATGCCAGGGGATAGTTATGACTGCCTGTCATGTGTATGTTATTAGACACTGGGATAGATGATTTAAAATTCTACAAATTTTAAAGGGTGTAGCTGCAAAAAAACTAACGTTCTTTACTGTTTACTGTAAAATTGAACATTTGGTAAGCAAGTTTATTGTATTTTCTCTTAGTGCATGGAACTGTGGCTCGGGAAAGCACATATCCCTAGATTGGCACGAACCCGAAGTTTTTCAAGGCTGGCTGCCTATTCGTTATCCATCATGGATGGCAAACGAGTTAAGTTTCTCTCTCCACCCCCAAGCAATAGTTTCGGGAGTATGTCGTTCCATATACTTATATATGTGTGTTACTCCATGTATAGTCGTGTGAACGCAGTTGGGATGACAAAGTGCATCTACTGAATCTCGTCATCAATAATTTAGAAAAAAGAATATGTTCTACACATGTACTCCCAAGCATGGCATAGTGAGAAGCATGTATTACTTTGATATCGTTTTTCATGGGTTTAACTTCTTGTATCAGACTCGCATTATGAGGGAGGATTTATGTGCTCATGCCTGGCAATTTCACTTCAATAAGGTATGTTGGTCTTTTATGCAGTCATCAAACATTGTTTCTGGACGCTAACCATCATGTAATGAATTAGATAATATGAAACCTGGTTAGGAGAGGAGGATATTGAAGTTCTAAATTAACTGGATGAATTCTTTTACGTTTGTGTTTTATGATTGATTAAACCTGCTTATGTTATTACATATTTTCTACACATTTGAGTACCTTTTATCTTTTCTACACCATTCCTTAGGCATCTTACGAAGATTCATGGTATCTACATCTAATTTTATCCTCGTCTTAGTTGCACACCAACTATATGGTTTCCATCACAAATATTCATAATTTATTTTAAGTGTGCCCTACTCACTGGGAGAGGTTAGATGGCTGGTGGTGGATATTTTAGCAATACAAATTTCATGGATGATCCTCACAGCTTAGATAGCCATGCTAGTGATTGTGTTAAAAAAAACATCTAACATGCACCCCAAAAAAAAAAAAAAATTCCCATACCACTTGGATTTGGAACTGTCTATGGAGCATGATAATCGTATATAATGCGTCTATTTTCAAATTTGTGTGGTGTCATGGCCGTGTCTATGTTTCTTCGTGAAATGTCTGCTGGTACTCACAATATTGATGGCCGTACTAGTGATTTAGAGGGTATATCCCAAAAGGTGTCTACTGCTTGATCCTGAATACCTTTTGAGAAGTACAATTGCATGGTTCTATTATCATGCTCGAGTGCAGGCTGGTTTTAGTCCAAGCTACCAATTTTCTGCTTAGATGCAAATGTATCTAAAGTTATAATGTGCAACCGACTGAACATCCACGTCCAAATCTTTAAGGCACCTTTCCTGATGAGGGGCAAATTGATTCATAATGTCTGGTGAGTTAATTTCTGTTCCCTTCAGGAAGCTCCCATATACTGGCGGAATCTTGATCCGTATTGGCAAGGCAGCCACCCTCTGATGCGCCGATATTTCCATCCCGATGGGAGCCAAACTGCTGATCCTGATGATAGAGTATGGGGTGGGCATGAATGCTGCTTTTCCACGGTTACAAGTTTCATCGGCGATGGGGAGATCAGAGAACACTACGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGGAAGATGTCGAATCATTTCACCTCGTACTCAAGCATAGCCGATGCTGACAAGGATAGCGGGACGGGGCCACTCTAA

mRNA sequence

AAACTGGGTTTCTATTTTGCAACCGCCATTTCCTTAGCAATGTCGGCCAGATCACAATGCTAATCGCCGATCGCGCCATCCTCTCCAAAACCCTTTTCGCCTCTTGAGCTTTGAATTTATGGCGCAAAGTGACTTCCTCCGGCCGCCGATGAAAGCAAGGAAGAAGAAGAAGAAGCGAGAGAGTGTCTCGGATGAACAAGGGCAACAAAATGGAACCCGTAATGAACTTCTCCAAGATCCTTTCGAGGTTTTAGGTCCTGATCTATTAATGACGATACTTAGCTACGTTGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTGGCTTCCAGCGATCGCCTATGGAATTCGAAGACTCGCATTATGAGGGAGGATTTATGTGCTCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCCATATACTGGCGGAATCTTGATCCGTATTGGCAAGGCAGCCACCCTCTGATGCGCCGATATTTCCATCCCGATGGGAGCCAAACTGCTGATCCTGATGATAGAGTATGGGGTGGGCATGAATGCTGCTTTTCCACGGTTACAAGTTTCATCGGCGATGGGGAGATCAGAGAACACTACGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGGAAGATGTCGAATCATTTCACCTCGTACTCAAGCATAGCCGATGCTGACAAGGATAGCGGGACGGGGCCACTCTAA

Coding sequence (CDS)

ATGGCGCAAAGTGACTTCCTCCGGCCGCCGATGAAAGCAAGGAAGAAGAAGAAGAAGCGAGAGAGTGTCTCGGATGAACAAGGGCAACAAAATGGAACCCGTAATGAACTTCTCCAAGATCCTTTCGAGGTTTTAGGTCCTGATCTATTAATGACGATACTTAGCTACGTTGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTGGCTTCCAGCGATCGCCTATGGAATTCGAAGACTCGCATTATGAGGGAGGATTTATGTGCTCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCCATATACTGGCGGAATCTTGATCCGTATTGGCAAGGCAGCCACCCTCTGATGCGCCGATATTTCCATCCCGATGGGAGCCAAACTGCTGATCCTGATGATAGAGTATGGGGTGGGCATGAATGCTGCTTTTCCACGGTTACAAGTTTCATCGGCGATGGGGAGATCAGAGAACACTACGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGGAAGATGTCGAATCATTTCACCTCGTACTCAAGCATAGCCGATGCTGACAAGGATAGCGGGACGGGGCCACTCTAA

Homology

[Close]

BLAST of CmoCh14G019080.1 vs. TrEMBL
Match: A0A0A0L471_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133360 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 6.1e-97
Identity = 182/247 (73.68%), Postives = 195/247 (78.95%), Query Frame = 1


Query: 1   MAQSDFLR--PPMKARKKKKKRESVSDEQGQQNG-TRNELLQDPFEVLGPDLLMTILSYV 60
           MAQSDFL      K+RKKKKKRE+VSDE+GQQN  TRN LLQDPFEVLG DLL+ ILSY+
Sbjct: 1   MAQSDFLGGGARWKSRKKKKKRETVSDERGQQNSKTRNPLLQDPFEVLGSDLLLAILSYL 60

Query: 61  DARSVALSLLVSRSWYAVASSDRLWNS--------------------------------- 120
           DARSVALSL VSRSWYAVASSDRLW+S                                 
Sbjct: 61  DARSVALSLPVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLAQSRGLPKLAAYSLSVMD 120

Query: 121 --KTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRV 180
             +TRIMREDLC HAWQFHFNKEAP+YWR+LDPYWQGSHPLMRRYFHPDG+QTADPDDRV
Sbjct: 121 GKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGTQTADPDDRV 180

Query: 181 WGGHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADK 210
           WGGHE CFSTVTSF+GDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD +K
Sbjct: 181 WGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPEK 240

[Close]

BLAST of CmoCh14G019080.1 vs. TrEMBL
Match: A0A061EM39_THECC (F-box family protein OS=Theobroma cacao GN=TCM_020443 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 131/235 (55.74%), Postives = 163/235 (69.36%), Query Frame = 1


Query: 12  KARKKKKKRESVSDEQGQQNGTRNE--LLQDPFEVLGPDLLMTILSYVDARSVALSLLVS 71
           + +K+K+  E+  ++Q Q+ G   E  + +DP EV G D+++ ILS +DARSVALSLLVS
Sbjct: 19  RLKKRKRNEENDPEDQKQEQGNEEEEVVARDPLEVFGRDIMVMILSNLDARSVALSLLVS 78

Query: 72  RSWYAVASS--------DRLWNSK---------------------------TRIMREDLC 131
           R+W+ VASS        + LW+ K                           TRIM++DLC
Sbjct: 79  RAWHGVASSDRLWSSKCEELWHGKAHIPRASQARGLSKLAAYSISVMDGKRTRIMKDDLC 138

Query: 132 AHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVT 191
            H W+FHFNK AP YWRNLDPYW+G+ PLMRRYFHPDGSQTADP D+VWGGHECC+S VT
Sbjct: 139 DHVWEFHFNKAAPEYWRNLDPYWKGTGPLMRRYFHPDGSQTADPGDKVWGGHECCYSVVT 198

Query: 192 SFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 210
           S +G+G+IR HYVRINRWPRMFVSRN+DWSW+MSN    Y+S+ DADK  GTGPL
Sbjct: 199 SVVGEGKIRVHYVRINRWPRMFVSRNQDWSWEMSNCLYCYTSVPDADKKGGTGPL 253

[Close]

BLAST of CmoCh14G019080.1 vs. TrEMBL
Match: F6HS42_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00330 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.7e-68
Identity = 133/239 (55.65%), Postives = 159/239 (66.53%), Query Frame = 1


Query: 5   DFLRPPMKARKKKKKRESVSDEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDARSVAL 64
           D  + P   RKKK+KR+  ++E       ++E+LQDP EV G D++M ILSY+DA SVAL
Sbjct: 34  DVTKSPGSKRKKKRKRQDGAEEG------KSEVLQDPLEVFGSDMMMMILSYLDAPSVAL 93

Query: 65  SLLVSRSWYAVASS--------DRLWNSK---------------------------TRIM 124
           SLLVSR W+ VASS        + LW  K                           +RI 
Sbjct: 94  SLLVSRGWHGVASSDRLWSTKCEELWCGKAHIPRVSQERGLSKLAAYSFSVMDGKRSRIT 153

Query: 125 REDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECC 184
           ++DLC H W FHFN+ AP YWRNLDPYW+G+ P MRRYFHPDGSQTADP D+VWGGHECC
Sbjct: 154 KDDLCDHVWNFHFNRGAPDYWRNLDPYWKGTGPPMRRYFHPDGSQTADPGDQVWGGHECC 213

Query: 185 FSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGP 209
           +S VTSF+G G+IREHYVRINRWP+M V R  DWSW+MSNH   YSSI DADK+ GTGP
Sbjct: 214 YSIVTSFVGGGKIREHYVRINRWPQMSVFRKPDWSWEMSNHLYCYSSIPDADKEGGTGP 266

[Close]

BLAST of CmoCh14G019080.1 vs. TrEMBL
Match: B9RWR4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023650 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.8e-67
Identity = 137/237 (57.81%), Postives = 156/237 (65.82%), Query Frame = 1


Query: 8   RPPMKARKKKKKRESVSDEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDARSVALSLL 67
           R   K RK+KKK++S  ++  +Q         DP EVLG DL+M ILS +DARSVALSLL
Sbjct: 26  RDDFKERKRKKKKKSEGEDCERQ---------DPLEVLGWDLMMKILSNLDARSVALSLL 85

Query: 68  VSRSWYAVASS--------DRLWNSK---------------------------TRIMRED 127
           VSRSW  +A S        + LW  K                           TRIMR+D
Sbjct: 86  VSRSWNLLACSDRLWTSKCEELWLGKAHIPRLSQVRGLSKLAAYSLSVMDAKRTRIMRDD 145

Query: 128 LCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFST 187
           LC H W+FHF K AP YWRNLDPYW+G+ PLM RYFH DGSQ+ADP DRVWGGHECCFS 
Sbjct: 146 LCDHVWEFHFTKVAPEYWRNLDPYWKGTGPLMHRYFHQDGSQSADPGDRVWGGHECCFSV 205

Query: 188 VTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 210
           VTSFIGDG IREHYVRINRWPR+ VSR +DWSW+MSNH   YSSI DA K+ GTGPL
Sbjct: 206 VTSFIGDGTIREHYVRINRWPRLSVSRKQDWSWEMSNHLFCYSSIPDAYKEGGTGPL 253

[Close]

BLAST of CmoCh14G019080.1 vs. TrEMBL
Match: A0A067KNI3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12918 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.5e-66
Identity = 131/233 (56.22%), Postives = 154/233 (66.09%), Query Frame = 1


Query: 12  KARKKKKKRESVSDEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDARSVALSLLVSRS 71
           + R+K+KK E+ ++    +    + L QDP E LG D+++ ILS +DARSVALSLLVSR 
Sbjct: 57  RRRRKRKKTENGNEAAEVKCNEEDFLRQDPLEGLGWDIMLKILSNLDARSVALSLLVSRG 116

Query: 72  WYAVAS--------SDRLWNSK---------------------------TRIMREDLCAH 131
           W+ +AS         + LW  K                           TRIMR+DLC H
Sbjct: 117 WHRLASSDRLWSSKCEELWLGKAHIPRLSQIRGISKLAAYSLSVMDGKRTRIMRDDLCDH 176

Query: 132 AWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTSF 191
           AW+FHF K AP YWRNLDPYW+G+ PLM RYFH DGSQTADP DRVWGGHECCFS VTSF
Sbjct: 177 AWEFHFTKLAPEYWRNLDPYWKGTEPLMHRYFHQDGSQTADPGDRVWGGHECCFSVVTSF 236

Query: 192 IGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 210
           I DG IREHYVRINRWPRM VSR +DWSW+MSNH   YSS+ DA K  GTGP+
Sbjct: 237 IADGTIREHYVRINRWPRMSVSRKQDWSWEMSNHLFCYSSVPDAYKKGGTGPV 289

[Close]

BLAST of CmoCh14G019080.1 vs. NCBI nr
Match: gi|449432476|ref|XP_004134025.1| (PREDICTED: uncharacterized protein LOC101220252 isoform X2 [Cucumis sativus])

HSP 1 Score: 380.6 bits (976), Expect = 1.8e-102
Identity = 183/212 (86.32%), Postives = 195/212 (91.98%), Query Frame = 1


Query: 1   MAQSDFLR--PPMKARKKKKKRESVSDEQGQQNG-TRNELLQDPFEVLGPDLLMTILSYV 60
           MAQSDFL      K+RKKKKKRE+VSDE+GQQN  TRN LLQDPFEVLG DLL+ ILSY+
Sbjct: 1   MAQSDFLGGGARWKSRKKKKKRETVSDERGQQNSKTRNPLLQDPFEVLGSDLLLAILSYL 60

Query: 61  DARSVALSLLVSRSWYAVASSDRLWNSKTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYW 120
           DARSVALSL VSRSWYAVASSDRLW+SKTRIMREDLC HAWQFHFNKEAP+YWR+LDPYW
Sbjct: 61  DARSVALSLPVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYW 120

Query: 121 QGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTSFIGDGEIREHYVRINRWPRMFV 180
           QGSHPLMRRYFHPDG+QTADPDDRVWGGHE CFSTVTSF+GDGEIREHYVRINRWPRMFV
Sbjct: 121 QGSHPLMRRYFHPDGTQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFV 180

Query: 181 SRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 210
           SRNEDWSW+MSNHFTSYSSIAD +K  GTGPL
Sbjct: 181 SRNEDWSWRMSNHFTSYSSIADPEKTGGTGPL 212

[Close]

BLAST of CmoCh14G019080.1 vs. NCBI nr
Match: gi|659075960|ref|XP_008438424.1| (PREDICTED: uncharacterized protein LOC103483521 isoform X2 [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 4.0e-102
Identity = 184/219 (84.02%), Postives = 195/219 (89.04%), Query Frame = 1


Query: 1   MAQSDFL---------RPPMKARKKKKKRESVSDEQGQQNG-TRNELLQDPFEVLGPDLL 60
           MAQSDFL         +   K +KKKKKRE+VSDE+GQQN  T N +LQDPFEVLG DLL
Sbjct: 1   MAQSDFLDGGARWKTRKKKKKKKKKKKKRETVSDERGQQNRRTGNPILQDPFEVLGSDLL 60

Query: 61  MTILSYVDARSVALSLLVSRSWYAVASSDRLWNSKTRIMREDLCAHAWQFHFNKEAPIYW 120
           M ILSY+DARSVALSLLVSRSWYAVASSDRLW+SKTRIMREDLC HAWQFHFNKEAP+YW
Sbjct: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 120

Query: 121 RNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTSFIGDGEIREHYVRIN 180
           R+LDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHE CFSTVTSF+GDGEIREHYVRIN
Sbjct: 121 RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN 180

Query: 181 RWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 210
           RWPRMFVSRNEDWSW+MSNHFTSYSSIAD DK  GTGPL
Sbjct: 181 RWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 219

[Close]

BLAST of CmoCh14G019080.1 vs. NCBI nr
Match: gi|449432472|ref|XP_004134023.1| (PREDICTED: uncharacterized protein LOC101220252 isoform X1 [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 8.7e-97
Identity = 182/247 (73.68%), Postives = 195/247 (78.95%), Query Frame = 1


Query: 1   MAQSDFLR--PPMKARKKKKKRESVSDEQGQQNG-TRNELLQDPFEVLGPDLLMTILSYV 60
           MAQSDFL      K+RKKKKKRE+VSDE+GQQN  TRN LLQDPFEVLG DLL+ ILSY+
Sbjct: 1   MAQSDFLGGGARWKSRKKKKKRETVSDERGQQNSKTRNPLLQDPFEVLGSDLLLAILSYL 60

Query: 61  DARSVALSLLVSRSWYAVASSDRLWNS--------------------------------- 120
           DARSVALSL VSRSWYAVASSDRLW+S                                 
Sbjct: 61  DARSVALSLPVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLAQSRGLPKLAAYSLSVMD 120

Query: 121 --KTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRV 180
             +TRIMREDLC HAWQFHFNKEAP+YWR+LDPYWQGSHPLMRRYFHPDG+QTADPDDRV
Sbjct: 121 GKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGTQTADPDDRV 180

Query: 181 WGGHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADK 210
           WGGHE CFSTVTSF+GDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD +K
Sbjct: 181 WGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPEK 240

[Close]

BLAST of CmoCh14G019080.1 vs. NCBI nr
Match: gi|659075958|ref|XP_008438422.1| (PREDICTED: uncharacterized protein LOC103483521 isoform X1 [Cucumis melo])

HSP 1 Score: 340.5 bits (872), Expect = 2.1e-90
Identity = 175/254 (68.90%), Postives = 187/254 (73.62%), Query Frame = 1


Query: 1   MAQSDFL---------RPPMKARKKKKKRESVSDEQGQQNG-TRNELLQDPFEVLGPDLL 60
           MAQSDFL         +   K +KKKKKRE+VSDE+GQQN  T N +LQDPFEVLG DLL
Sbjct: 1   MAQSDFLDGGARWKTRKKKKKKKKKKKKRETVSDERGQQNRRTGNPILQDPFEVLGSDLL 60

Query: 61  MTILSYVDARSVALSLLVSRSWY-----------------------------------AV 120
           M ILSY+DARSVALSLLVSRSWY                                   A 
Sbjct: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKCLELWLGKAHIPRLAQSRGLPKLAA 120

Query: 121 ASSDRLWNSKTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQT 180
            S   +   +TRIMREDLC HAWQFHFNKEAP+YWR+LDPYWQGSHPLMRRYFHPDGSQT
Sbjct: 121 YSLSIMDGKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT 180

Query: 181 ADPDDRVWGGHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYS 210
           ADPDDRVWGGHE CFSTVTSF+GDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYS
Sbjct: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 240

[Close]

BLAST of CmoCh14G019080.1 vs. NCBI nr
Match: gi|590657285|ref|XP_007034521.1| (F-box family protein [Theobroma cacao])

HSP 1 Score: 270.8 bits (691), Expect = 2.0e-69
Identity = 131/235 (55.74%), Postives = 163/235 (69.36%), Query Frame = 1


Query: 12  KARKKKKKRESVSDEQGQQNGTRNE--LLQDPFEVLGPDLLMTILSYVDARSVALSLLVS 71
           + +K+K+  E+  ++Q Q+ G   E  + +DP EV G D+++ ILS +DARSVALSLLVS
Sbjct: 19  RLKKRKRNEENDPEDQKQEQGNEEEEVVARDPLEVFGRDIMVMILSNLDARSVALSLLVS 78

Query: 72  RSWYAVASS--------DRLWNSK---------------------------TRIMREDLC 131
           R+W+ VASS        + LW+ K                           TRIM++DLC
Sbjct: 79  RAWHGVASSDRLWSSKCEELWHGKAHIPRASQARGLSKLAAYSISVMDGKRTRIMKDDLC 138

Query: 132 AHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVT 191
            H W+FHFNK AP YWRNLDPYW+G+ PLMRRYFHPDGSQTADP D+VWGGHECC+S VT
Sbjct: 139 DHVWEFHFNKAAPEYWRNLDPYWKGTGPLMRRYFHPDGSQTADPGDKVWGGHECCYSVVT 198

Query: 192 SFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 210
           S +G+G+IR HYVRINRWPRMFVSRN+DWSW+MSN    Y+S+ DADK  GTGPL
Sbjct: 199 SVVGEGKIRVHYVRINRWPRMFVSRNQDWSWEMSNCLYCYTSVPDADKKGGTGPL 253

The following BLAST results are available for this feature:

BLAST of CmoCh14G019080.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G019080.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L471_CUCSA	6.1e-97	73.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133360 PE=4 SV=1	[more]
A0A061EM39_THECC	1.4e-69	55.74	F-box family protein OS=Theobroma cacao GN=TCM_020443 PE=4 SV=1	[more]
F6HS42_VITVI	2.7e-68	55.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00330 PE=4 SV=...	[more]
B9RWR4_RICCO	3.8e-67	57.81	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023650 PE=4 SV=1	[more]
A0A067KNI3_JATCU	5.5e-66	56.22	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12918 PE=4 SV=1	[more]

BLAST of CmoCh14G019080.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G019080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432476\|ref\|XP_004134025.1\|	1.8e-102	86.32	PREDICTED: uncharacterized protein LOC101220252 isoform X2 [Cucumis sativus]	[more]
gi\|659075960\|ref\|XP_008438424.1\|	4.0e-102	84.02	PREDICTED: uncharacterized protein LOC103483521 isoform X2 [Cucumis melo]	[more]
gi\|449432472\|ref\|XP_004134023.1\|	8.7e-97	73.68	PREDICTED: uncharacterized protein LOC101220252 isoform X1 [Cucumis sativus]	[more]
gi\|659075958\|ref\|XP_008438422.1\|	2.1e-90	68.90	PREDICTED: uncharacterized protein LOC103483521 isoform X1 [Cucumis melo]	[more]
gi\|590657285\|ref\|XP_007034521.1\|	2.0e-69	55.74	F-box family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G019080	CmoCh14G019080	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G019080.1	CmoCh14G019080.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G019080.1.exon.3	CmoCh14G019080.1.exon.3	exon
CmoCh14G019080.1.exon.2	CmoCh14G019080.1.exon.2	exon
CmoCh14G019080.1.exon.1	CmoCh14G019080.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G019080.1.five_prime_UTR.1	CmoCh14G019080.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G019080.1.CDS.1	CmoCh14G019080.1.CDS.1	CDS
CmoCh14G019080.1.CDS.2	CmoCh14G019080.1.CDS.2	CDS
CmoCh14G019080.1.CDS.3	CmoCh14G019080.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 47..84 score: 2.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 39..119 score: 7.06E-13coord: 171..187 score: 7.06
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 39..84 score: 8.4
None	No IPR available	PANTHER	PTHR22844	F-BOX AND WD40 DOMAIN PROTEIN	coord: 14..208 score: 2.1
None	No IPR available	PANTHER	PTHR22844:SF163	SUBFAMILY NOT NAMED	coord: 14..208 score: 2.1