CmoCh14G018640.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G018640.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr14 : 14025629 .. 14025901 (-)
Sequence length273
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGTCTTTCTCCATCCAGAATACATCGGATTGCACCTAGTTTCAAGATCAAGTGTTGCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTCCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAAGTTTGAAATCATGGGTTAG

mRNA sequence

ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGTCTTTCTCCATCCAGAATACATCGGATTGCACCTAGTTTCAAGATCAAGTGTTGCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTCCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAAGTTTGAAATCATGGGTTAG

Coding sequence (CDS)

ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGTCTTTCTCCATCCAGAATACATCGGATTGCACCTAGTTTCAAGATCAAGTGTTGCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTCCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAAGTTTGAAATCATGGGTTAG
Homology
[Close]
BLAST of CmoCh14G018640.1 vs. TrEMBL
Match: A0A0A0L4C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134880 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-06
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 1  MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKC 42
          MAALASS+LQ  LQIR SDS  G L PS IHRIAPSF +KC
Sbjct: 1  MAALASSLLQSSLQIRTSDSSFGSLFPSTIHRIAPSFNLKC 41

[Close]
BLAST of CmoCh14G018640.1 vs. NCBI nr
Match: gi|659076093|ref|XP_008438497.1| (PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 1  MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKC 42
          MAALASSVLQ PLQIR SDS  G L  SRIHRIAPSF +KC
Sbjct: 1  MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKC 41

The following BLAST results are available for this feature:
BLAST of CmoCh14G018640.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G018640.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4C7_CUCSA8.1e-0673.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134880 PE=4 SV=1[more]
BLAST of CmoCh14G018640.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G018640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076093|ref|XP_008438497.1|1.0e-0678.05PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis m... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh14G018640CmoCh14G018640gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh14G018640.1CmoCh14G018640.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh14G018640.1.CDS.1CmoCh14G018640.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh14G018640.1.exon.1CmoCh14G018640.1.exon.1exon