CmoCh14G018640 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G018640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr14 : 14025629 .. 14025901 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGTCTTTCTCCATCCAGAATACATCGGATTGCACCTAGTTTCAAGATCAAGTGTTGCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTCCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAAGTTTGAAATCATGGGTTAG

mRNA sequence

ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGTCTTTCTCCATCCAGAATACATCGGATTGCACCTAGTTTCAAGATCAAGTGTTGCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTCCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAAGTTTGAAATCATGGGTTAG

Coding sequence (CDS)

ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGTCTTTCTCCATCCAGAATACATCGGATTGCACCTAGTTTCAAGATCAAGTGTTGCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTCCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAAGTTTGAAATCATGGGTTAG
Homology
[Close]
BLAST of CmoCh14G018640 vs. TrEMBL
Match: A0A0A0L4C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134880 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-06
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 1  MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKC 42
          MAALASS+LQ  LQIR SDS  G L PS IHRIAPSF +KC
Sbjct: 1  MAALASSLLQSSLQIRTSDSSFGSLFPSTIHRIAPSFNLKC 41

[Close]
BLAST of CmoCh14G018640 vs. NCBI nr
Match: gi|659076093|ref|XP_008438497.1| (PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 1  MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKC 42
          MAALASSVLQ PLQIR SDS  G L  SRIHRIAPSF +KC
Sbjct: 1  MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKC 41

The following BLAST results are available for this feature:
BLAST of CmoCh14G018640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G018640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4C7_CUCSA8.1e-0673.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134880 PE=4 SV=1[more]
BLAST of CmoCh14G018640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G018640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076093|ref|XP_008438497.1|1.0e-0678.05PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis m... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G018640.1CmoCh14G018640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G018640MELO3C006407.2Melon (DHL92) v3.6.1cmomedB260
CmoCh14G018640Bhi01G000509Wax gourdcmowgoB0320
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G018640Cucumber (Chinese Long) v3cmocucB0267
CmoCh14G018640Cucumber (Chinese Long) v3cmocucB0283
CmoCh14G018640Watermelon (97103) v2cmowmbB243
CmoCh14G018640Watermelon (97103) v2cmowmbB246
CmoCh14G018640Watermelon (97103) v2cmowmbB253
CmoCh14G018640Wax gourdcmowgoB0299
CmoCh14G018640Wax gourdcmowgoB0333
CmoCh14G018640Cucurbita moschata (Rifu)cmocmoB198
CmoCh14G018640Cucurbita moschata (Rifu)cmocmoB207
CmoCh14G018640Cucurbita moschata (Rifu)cmocmoB213
CmoCh14G018640Cucurbita moschata (Rifu)cmocmoB224
CmoCh14G018640Cucurbita moschata (Rifu)cmocmoB233
CmoCh14G018640Cucumber (Gy14) v1cgycmoB0700
CmoCh14G018640Cucumber (Gy14) v1cgycmoB1054
CmoCh14G018640Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G018640Cucurbita maxima (Rimu)cmacmoB350
CmoCh14G018640Cucurbita maxima (Rimu)cmacmoB500
CmoCh14G018640Cucurbita maxima (Rimu)cmacmoB579
CmoCh14G018640Cucurbita maxima (Rimu)cmacmoB797
CmoCh14G018640Cucurbita maxima (Rimu)cmacmoB883
CmoCh14G018640Wild cucumber (PI 183967)cmocpiB228
CmoCh14G018640Wild cucumber (PI 183967)cmocpiB243
CmoCh14G018640Cucumber (Chinese Long) v2cmocuB225
CmoCh14G018640Cucumber (Chinese Long) v2cmocuB239
CmoCh14G018640Melon (DHL92) v3.5.1cmomeB220
CmoCh14G018640Melon (DHL92) v3.5.1cmomeB221
CmoCh14G018640Melon (DHL92) v3.5.1cmomeB230
CmoCh14G018640Watermelon (Charleston Gray)cmowcgB219
CmoCh14G018640Watermelon (Charleston Gray)cmowcgB221
CmoCh14G018640Watermelon (Charleston Gray)cmowcgB227
CmoCh14G018640Watermelon (97103) v1cmowmB223
CmoCh14G018640Watermelon (97103) v1cmowmB231
CmoCh14G018640Watermelon (97103) v1cmowmB239
CmoCh14G018640Cucurbita pepo (Zucchini)cmocpeB223
CmoCh14G018640Cucurbita pepo (Zucchini)cmocpeB230
CmoCh14G018640Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G018640Cucurbita pepo (Zucchini)cmocpeB252
CmoCh14G018640Cucurbita pepo (Zucchini)cmocpeB254
CmoCh14G018640Bottle gourd (USVL1VR-Ls)cmolsiB213
CmoCh14G018640Bottle gourd (USVL1VR-Ls)cmolsiB233
CmoCh14G018640Bottle gourd (USVL1VR-Ls)cmolsiB235
CmoCh14G018640Cucumber (Gy14) v2cgybcmoB181
CmoCh14G018640Cucumber (Gy14) v2cgybcmoB290
CmoCh14G018640Melon (DHL92) v3.6.1cmomedB249
CmoCh14G018640Melon (DHL92) v3.6.1cmomedB250
CmoCh14G018640Silver-seed gourdcarcmoB0319
CmoCh14G018640Silver-seed gourdcarcmoB0328
CmoCh14G018640Silver-seed gourdcarcmoB1049
CmoCh14G018640Silver-seed gourdcarcmoB1284
CmoCh14G018640Silver-seed gourdcarcmoB1443