CmoCh12G011070.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTGTTCGTCCCTACCACTCAATTTCTTATGGAACTCACAGATTTTCGTCTCCATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTGTGAGTTCTCTGCCTTTGAATTCTTGAGAGCGAAACTAAATTTGTGTTGTTCGGAGAATCTATGGGTTGAATGTTTAATGCAGATATATAGTTATAGAATAATTTGAACTTTTGTTTATCATGGGAAGAAAATGGTAATGATCTGGTGTATGTTTATGAGAATTTGATAATCTTTCTGAGACCCATTTTTAGAAAGTGGGCATCATATTGTGATGGGTTGTTTAAAATGATGGCCACAATATTGAGAAATACCTTCTCTGGTCTAAAGTCTTGGCTACTCACATATTGTCCTTTTGGATTTTTTCTTTCGGATTTTTCTAAGGAGAGGTTCCCATATCTTTATAAAGAATGAATTGTATACTCCTCAACTAATGTGAGGTCTCACAATCCACCCCCTTTGGAGCCCAGCGTCATCGTTCCCCTCTCCAATTGATGTGGGACCCCCTAATCGACCCCCCTTCGGGACCCAGCGTCCTCGTTCCCCTCTCCAATTGATGTGGGACTCCCTAATCGACCCCCCTTCGGGGCCCAGCGTCCTCGTTCCCCTCTCCAATTGATGTAAGATCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCCTCGTTCCCCTCTCCAATTGATGTGGGACCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCAGTGCTGGCACATCGCCTAGTGTCCACCCTCCTTTGGGGTTCAATCTCCTTGTTGGCACATCGTCCTCTGATACCATTTGTAACAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCATTGCTAGCAGATATTGTCCTCTTTGGACAGCCTCTTTTCGAGCGCTTCCCTTAAGGTTTTTAAAACGGATCTCCTAAGGGGAGGTTTCTACACCTTCATAAAGAATACTTTGTTCTTCTCCCTAACTGATGTGAGATCTCACAATCCACCCCCTTCGGAGTCCACTATCCTTGCTAGCACTCGTTCACCTCTCCAATCAACGTGGGATCCCCAATCCACCCCCCTTTGGGGCCCAGCGTCCTCGTAGGCACACCACCTGATGTCCACCCCCCTTTCAGGGTTCAGCCTCCTCGCTGGCACATTGCCTGGTGTCTAGCTCTGATACCATTTGTAACAGTCCAAGTCCACCGCTAGCAGATATTGTCCTTTTTTGGTTTTCCCATTCGGGCTTCCCTTCAAGGTTTTTAAAACTAGTCTTCTAGGTAAAGGTTTCCACACCCTTATAAAAAATGATTTGTTCTACTCCCCAACCAATGTGGGATCTCACAATGGTCTTCCTCAAAGAGTAGTAAGGTGGGCCATGAGCACAAGAAACATAGGTTAAATTATAAGTTTACGCTTTGATCACTTAAGTTTGTGTCTAAAGGGTCCCGAAACGTTATGAACTGCTGATTGTAGAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGGTAAACTAAGCTAACTACCACTTATTTCACTCTTCACTTTCCAAGCTACAATTTCTACCATTTCTTGCTTAAATTGAACACATTACAACTAGTAGATGCCTTAACTATACTCGTAGTCGTGTCTCCGTGTTTATGCGAGTTGACCTTGCATATGAGTTTCTCGACTTCAAAGGAAAAGAAAACCACAAACAAACTTGTATGTATCTTAGCACGTGTCAATATCCCAACTAGCGTTGTTGTTTCTACTAGGTCTGTGAGCTCTAAAAACGTCGAATATGTTGAGGACTCGTTAAACACAAATGAAAAGTTTCTGGATTTATTAGACATTGTTTGAAGCCTAGAAACCAAATAGACACGAATCTCATAGTTCAGGGACTTGTTAGGCACAAACTTGAGGAACTTCATCTTAATATTGTTCTCGGTTGCTTTTGCTCTAAGCTCTGATACTAAATGTAACCGTCCAAACCCACCGCTAGCAGATATTGCCCTTTTTGGGCTTTCTTTTCCGGGCTTCCCCGCAAGGTTTTAAAACATGTTTGCTAGGAAGAGGTTTCCACACCTTTCCCCTCTCCAATCGATGTGGGATCTCACAATCCACCCCGTTGGTGGTTCAACGTCCTTGCTAGCATATTGCCCGGTGTCTAGCTTTGATACCATTTGTAACAGTCCAAGTTCACCGCTAGCAGTTATTGTCTTCTTTGGGCTTTCACTTCCGGGTCTCTCCTTGAGGTTTTAAAACGTGTTTGCTGGGTCTTGAAGGGGGAGTACGAAACATTCTTTATAGGGGTGTAGAAACCTTTCTCTAGCAGACGCGTTTTAAAACTGTGAGACTGACGGTGATACATAACGGGCCAAAGCGGACAATATCTATTAGTGTGGGCTTGAGACGTTACACTAAAACACTAAAACACCAGGATGAATGCATCAAAGAAGTGAATAATATGCTTGTAGTTGCTACTTCATTTATGAAACTGCAGGGTGAGTAAGGTTTGTTATGTAACTGCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAAGAAACATGTAAGACCCAGATCTTCCCATCTATTTCCTTCACATTCAAGTGTATAAATTTGATGCTGTATGATCGCTACAAGATGATTTGCAAGAAACCTGTTATGAAACATAGTTGAGTTTTTTTGTTCTTCTTGTTCTTCATCTTCTAGGCCTACCCTTTCCTTTTTGTTCATTTTGTTTTTAACAATTAGGATATTGGAGGTTCGAGATATTCACGGGCAAAGACAGAGAA AGTGTTCGTCCCTACCACTCAATTTCTTATGGAACTCACAGATTTTCGTCTCCATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAAGAAACATGTAAGACCCAGATCTTCCCATCTATTTCCTTCACATTCAAGTGTATAAATTTGATGCTGTATGATCGCTACAAGATGATTTGCAAGAAACCTGTTATGAAACATAGTTGAGTTTTTTTGTTCTTCTTGTTCTTCATCTTCTAGGCCTACCCTTTCCTTTTTGTTCATTTTGTTTTTAACAATTAGGATATTGGAGGTTCGAGATATTCACGGGCAAAGACAGAGAA ATGGAAACCATTCTCTTTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAACCCTTCCACTTCCAAGAATCTCTTCCCCGTTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCTGTTTCGCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCGATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCATATCGATTTCGTCACTGTTAGAAAGCTCACTAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAGGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCGTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTAACCGAGAATCTCCCAGTATTAGCTACCGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGA
BLAST of CmoCh12G011070.1 vs. Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 2.9e-106 Identity = 206/292 (70.55%), Postives = 242/292 (82.88%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2) HSP 1 Score: 375.6 bits (963), Expect = 5.1e-103 Identity = 206/302 (68.21%), Postives = 244/302 (80.79%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 5.1e-103 Identity = 206/302 (68.21%), Postives = 244/302 (80.79%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. TrEMBL
Match: A0A0A0LGA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020910 PE=4 SV=1) HSP 1 Score: 479.6 bits (1233), Expect = 2.8e-132 Identity = 251/298 (84.23%), Postives = 271/298 (90.94%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. TrEMBL
Match: A0A0D2SSZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G294200 PE=4 SV=1) HSP 1 Score: 434.1 bits (1115), Expect = 1.3e-118 Identity = 230/297 (77.44%), Postives = 252/297 (84.85%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. TrEMBL
Match: A0A0B0PCT8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05899 PE=4 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 1.8e-118 Identity = 231/297 (77.78%), Postives = 253/297 (85.19%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. TrEMBL
Match: M5WJ69_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009374mg PE=4 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 8.7e-118 Identity = 226/297 (76.09%), Postives = 256/297 (86.20%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. TrEMBL
Match: A0A061F263_THECC (Thylakoid lumen 18.3 kDa protein OS=Theobroma cacao GN=TCM_026607 PE=4 SV=1) HSP 1 Score: 430.3 bits (1105), Expect = 1.9e-117 Identity = 231/297 (77.78%), Postives = 252/297 (84.85%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. TAIR10
Match: AT1G54780.1 (AT1G54780.1 thylakoid lumen 18.3 kDa protein) HSP 1 Score: 386.3 bits (991), Expect = 1.6e-107 Identity = 206/292 (70.55%), Postives = 242/292 (82.88%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. NCBI nr
Match: gi|659070442|ref|XP_008455096.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo]) HSP 1 Score: 492.7 bits (1267), Expect = 4.6e-136 Identity = 261/298 (87.58%), Postives = 272/298 (91.28%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. NCBI nr
Match: gi|449442857|ref|XP_004139197.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis sativus]) HSP 1 Score: 479.6 bits (1233), Expect = 4.0e-132 Identity = 251/298 (84.23%), Postives = 271/298 (90.94%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. NCBI nr
Match: gi|1009117133|ref|XP_015875151.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 437.2 bits (1123), Expect = 2.3e-119 Identity = 231/297 (77.78%), Postives = 259/297 (87.21%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. NCBI nr
Match: gi|951025484|ref|XP_014513692.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Vigna radiata var. radiata]) HSP 1 Score: 434.1 bits (1115), Expect = 1.9e-118 Identity = 229/294 (77.89%), Postives = 257/294 (87.41%), Query Frame = 1
BLAST of CmoCh12G011070.1 vs. NCBI nr
Match: gi|823196841|ref|XP_012493059.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Gossypium raimondii]) HSP 1 Score: 434.1 bits (1115), Expect = 1.9e-118 Identity = 230/297 (77.44%), Postives = 252/297 (84.85%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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