CmoCh12G004660.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTTCCATCGTCACGCCTGCTCCCCGTTCCGTCGCGCTTAGCGCCGTTGCCGCATTCCTTCTCCACCGATCTTCTACCTGTCGTCGGTCTCAGGTATTTTCTCTCTCCCCCCATATTTGTTTCATTTCTTACAACGGATGAACGTCTGCAAGCTCAAACGAATCCGAAAATCGGTTCGATTCAAAATCGATTTTGCCTAATCATTAACATTCTTATGATCAAGATTATTGGTTTCGTTATTTGTTTAGCCAAAAACTATAGAAACCGAAGCTTCAGGATTCTGCTAAATGATAGTTTATGCGAGGAGAGAAGATCGAGTGAAATGTCCAGTAAGTGTATGCGAGTATAAATCTTAACAATTCTGGGTTTAGTGGTTTGCTTTTATGAACTGTTTAATAGAGCTACGCTACCATCCTTTAGTTTGTAAACATTGAAGTTATTGTGTATTTGAAATCGTTGACAGCCCTTTAATCTTTGAGAACAAACTATCTCTGAGAAAAAAAAAAACTAAAAGAAAACTTCCTAACAGTACCTTAATGGTATTTATGCGGATTTGATAACCATTTTGATTTCTTACCTTTTATGGATCATAGATTTATCTTTCGTCGTAAAACATTTGAGTTCGAAGCTAAATTTAAAACTAAATAGTGATATGACAAACGGAGTGTAATAGCCCAAGCCCACCGCTAGTAGATATTGTCTTCTTTGGGCTTTCCCTCTCGAGTTTTCCCCTCAAGGTTTTTAGAATACCTCTGCAAGGAAGAGGTTTCTACACTCTTATACACAATGTTTCATTCTCCCCCCAACCGATATGGGATATCATTATCTACCCCCTTTTGAGACCCAGCATCCTTGCTGGCACACCACCTCGTGTCCACTCCCGAACCTAGTGTTTGGCTCTGATACCATTTGTAACAGCCCATGCTCACTACTAGCAAATATTGTCCTTTTTGAGCTTTCCCTTTTGGGCTTCCCCTCAAGGTTCCTAGGACGCATCTGATAGGGAGAGGTTTCCACACTCTTATAAAGAATGTTTCGTTCTTTTCTCCGACTAATGTGAGATATCACACTAAGTTAGTTTGATTTTAGGAATTTGATATTATCTATTCCATCAATTGTCATTATGCTTATAATTTCCGTTGCACATATCTCAACGTGTTTAGAAATTGAAGCCATTGCAAATGAGTTCAAGCAGTGGCTCCATTGGTGAAACTTATTATGATGTACTGTCTTTGAGAGAAGATGCTAGCCATGACGAAATTCGAGCTAGCTACCGGTCTGCCCTCCTTAATTTCCACCCTGATAAGTTACAAGCTATGTGCCAGAAATCTCATCCAGACGACGTTGTGGGAGAACGATACTTCAAGGTGCAGAAGGCTTGGGAAGTCCTCGGCAGCTCGATGTCTCGTGCAGCTTATGACAGAGAGCTCCAAGCTGCCAAAGGGGATGCAATGGGTGCAGAGAGCATAGGCTTAGAGGATATGGCTGTGGAAGATAAAGGTGAGGTTGTAGAACTCTTTTATCAGTGCCGCTGTGGTGATTACTTCTTTATTGATTCTGTGGAGTTGGAGGAAATGGGATATCCAATGTTGAGGATTGGGAGTAAGGTTTCCTTAAGGACGTTCGATGCGTTGCCTGCATCTATTGTTTTGCCGTGTGGTTCGTGTTCTTTGAAAGTTCGTTTGTTAATCGATTCGGGTTCGTGTGCTTCAATTGATTGTTGAGTTTGAATGATTGAAATCATATTGCTCTGTTTTAAGCTCCATGGGATTTCTTTCTTGAATGATTGTGATGTTTGAGAGAGAGTTTATGAATATTTAGTGTTCTTGGTGGAGTTTGCATGGGTTTTCGTAAGTGGAAGTCGAACCTCACGTGTTGGACTCGTTCTGGATATAGCCCTATTTAGATTAGTTCACGCTCCCCTATTGGTGAAAAAATTTCTACACAATTATCTTGCAACGCTCGCCCATGCCATGACACATACATGTGCCACGTTGGAGAGCCACCCCATGTCTCCCCTTATATACATTCATATTTGTTCTGAAACTCATACGCATCAAAATGACAATGAGTCACGAGCCAATGTGAA ATGCCTTCCATCGTCACGCCTGCTCCCCGTTCCGTCGCGCTTAGCGCCGTTGCCGCATTCCTTCTCCACCGATCTTCTACCTGTCGTCGGTCTCAGAAATTGAAGCCATTGCAAATGAGTTCAAGCAGTGGCTCCATTGGTGAAACTTATTATGATGTACTGTCTTTGAGAGAAGATGCTAGCCATGACGAAATTCGAGCTAGCTACCGGTCTGCCCTCCTTAATTTCCACCCTGATAAGTTACAAGCTATGTGCCAGAAATCTCATCCAGACGACGTTGTGGGAGAACGATACTTCAAGGTGCAGAAGGCTTGGGAAGTCCTCGGCAGCTCGATGTCTCGTGCAGCTTATGACAGAGAGCTCCAAGCTGCCAAAGGGGATGCAATGGGTGCAGAGAGCATAGGCTTAGAGGATATGGCTGTGGAAGATAAAGGTGAGGTTGTAGAACTCTTTTATCAGTGCCGCTGTGGTGATTACTTCTTTATTGATTCTGTGGAGTTGGAGGAAATGGGATATCCAATGTTGAGGATTGGGAGTAAGGTTTCCTTAAGGACGTTCGATGCGTTGCCTGCATCTATTGTTTTGCCGTGTGGTTCGTGTTCTTTGAAAGTTCGTTTGTTAATCGATTCGGGTTCGTGTGCTTCAATTGATTGTTGAGTTTGAATGATTGAAATCATATTGCTCTGTTTTAAGCTCCATGGGATTTCTTTCTTGAATGATTGTGATGTTTGAGAGAGAGTTTATGAATATTTAGTGTTCTTGGTGGAGTTTGCATGGGTTTTCGTAAGTGGAAGTCGAACCTCACGTGTTGGACTCGTTCTGGATATAGCCCTATTTAGATTAGTTCACGCTCCCCTATTGGTGAAAAAATTTCTACACAATTATCTTGCAACGCTCGCCCATGCCATGACACATACATGTGCCACGTTGGAGAGCCACCCCATGTCTCCCCTTATATACATTCATATTTGTTCTGAAACTCATACGCATCAAAATGACAATGAGTCACGAGCCAATGTGAA ATGCCTTCCATCGTCACGCCTGCTCCCCGTTCCGTCGCGCTTAGCGCCGTTGCCGCATTCCTTCTCCACCGATCTTCTACCTGTCGTCGGTCTCAGAAATTGAAGCCATTGCAAATGAGTTCAAGCAGTGGCTCCATTGGTGAAACTTATTATGATGTACTGTCTTTGAGAGAAGATGCTAGCCATGACGAAATTCGAGCTAGCTACCGGTCTGCCCTCCTTAATTTCCACCCTGATAAGTTACAAGCTATGTGCCAGAAATCTCATCCAGACGACGTTGTGGGAGAACGATACTTCAAGGTGCAGAAGGCTTGGGAAGTCCTCGGCAGCTCGATGTCTCGTGCAGCTTATGACAGAGAGCTCCAAGCTGCCAAAGGGGATGCAATGGGTGCAGAGAGCATAGGCTTAGAGGATATGGCTGTGGAAGATAAAGGTGAGGTTGTAGAACTCTTTTATCAGTGCCGCTGTGGTGATTACTTCTTTATTGATTCTGTGGAGTTGGAGGAAATGGGATATCCAATGTTGAGGATTGGGAGTAAGGTTTCCTTAAGGACGTTCGATGCGTTGCCTGCATCTATTGTTTTGCCGTGTGGTTCGTGTTCTTTGAAAGTTCGTTTGTTAATCGATTCGGGTTCGTGTGCTTCAATTGATTGTTGA
BLAST of CmoCh12G004660.1 vs. Swiss-Prot
Match: DPH4_YEAST (Diphthamide biosynthesis protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JJJ3 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09 Identity = 49/154 (31.82%), Postives = 75/154 (48.70%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. Swiss-Prot
Match: DPH4_DICDI (DPH4 homolog OS=Dictyostelium discoideum GN=dph4 PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09 Identity = 50/185 (27.03%), Postives = 81/185 (43.78%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. Swiss-Prot
Match: DPH4_CANGA (Diphthamide biosynthesis protein 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DPH4 PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07 Identity = 43/130 (33.08%), Postives = 65/130 (50.00%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. Swiss-Prot
Match: DNAJ_BURM1 (Chaperone protein DnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.8e-07 Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. Swiss-Prot
Match: DNAJ_ANAMM (Chaperone protein DnaJ OS=Anaplasma marginale (strain St. Maries) GN=dnaJ PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.0e-07 Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TrEMBL
Match: A0A0A0LKX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360030 PE=4 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 3.7e-81 Identity = 153/172 (88.95%), Postives = 162/172 (94.19%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TrEMBL
Match: F6HDU0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04120 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52 Identity = 102/172 (59.30%), Postives = 130/172 (75.58%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TrEMBL
Match: B9MVN0_POPTR (DNAJ heat shock N-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s03170g PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 2.8e-52 Identity = 105/172 (61.05%), Postives = 133/172 (77.33%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TrEMBL
Match: M5XZ15_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012299mg PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 2.8e-52 Identity = 105/173 (60.69%), Postives = 135/173 (78.03%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TrEMBL
Match: B9R7F3_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1591240 PE=4 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 3.6e-52 Identity = 102/173 (58.96%), Postives = 133/173 (76.88%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TAIR10
Match: AT4G10130.1 (AT4G10130.1 DNAJ heat shock N-terminal domain-containing protein) HSP 1 Score: 180.6 bits (457), Expect = 1.0e-45 Identity = 86/165 (52.12%), Postives = 120/165 (72.73%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TAIR10
Match: AT1G74250.1 (AT1G74250.1 DNAJ heat shock N-terminal domain-containing protein) HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06 Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TAIR10
Match: AT5G18140.1 (AT5G18140.1 Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 49.7 bits (117), Expect = 2.7e-06 Identity = 31/99 (31.31%), Postives = 49/99 (49.49%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TAIR10
Match: AT3G14200.1 (AT3G14200.1 Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 48.9 bits (115), Expect = 4.6e-06 Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. TAIR10
Match: AT1G56300.1 (AT1G56300.1 Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 48.9 bits (115), Expect = 4.6e-06 Identity = 25/77 (32.47%), Postives = 43/77 (55.84%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. NCBI nr
Match: gi|659087788|ref|XP_008444636.1| (PREDICTED: DPH4 homolog [Cucumis melo]) HSP 1 Score: 313.9 bits (803), Expect = 2.2e-82 Identity = 156/180 (86.67%), Postives = 166/180 (92.22%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. NCBI nr
Match: gi|449470051|ref|XP_004152732.1| (PREDICTED: DPH4 homolog [Cucumis sativus]) HSP 1 Score: 309.3 bits (791), Expect = 5.3e-81 Identity = 153/172 (88.95%), Postives = 162/172 (94.19%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. NCBI nr
Match: gi|743787176|ref|XP_011030219.1| (PREDICTED: DPH4 homolog isoform X1 [Populus euphratica]) HSP 1 Score: 219.5 bits (558), Expect = 5.6e-54 Identity = 105/167 (62.87%), Postives = 133/167 (79.64%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. NCBI nr
Match: gi|743787179|ref|XP_011030225.1| (PREDICTED: DPH4 homolog isoform X2 [Populus euphratica]) HSP 1 Score: 219.5 bits (558), Expect = 5.6e-54 Identity = 105/167 (62.87%), Postives = 133/167 (79.64%), Query Frame = 1
BLAST of CmoCh12G004660.1 vs. NCBI nr
Match: gi|1009169658|ref|XP_015865785.1| (PREDICTED: DPH4 homolog [Ziziphus jujuba]) HSP 1 Score: 216.9 bits (551), Expect = 3.6e-53 Identity = 106/177 (59.89%), Postives = 140/177 (79.10%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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