CmoCh12G001040.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGCATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACTGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATGGTGTAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTACAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAACATCGCGAAGATTTTTTGGATGCGCCCGAGGACACTAGCAAGGAATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGCCCGATGTTTACTTATGGGCTGTGTACGTTTTTAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGCAAATAAAGAAGGCCTTGGATTTCTTGATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATGTACTTTATCTTAGTTTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATGTCAAAAGGTTTTATCAAGAAGACAAATTTTGGCAGAGCATTTATGCTTAGCGAGGATAAGTTTTTGGTCAAGTTTGTGATGCAGTATCTTTCTGAGGATCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAAACTCTTGGAGTGCAATTCAGGTAATTCGTCTCTTCTGTAAAAACTGTGCACTTCACTTGTGAGAAGATTGTAGGTTTGTGTGTAAAACTTATGAAATTTCACAGACCTTAGAACTGTTATTCACTGACAGAAGACCCATGAAGGTTATAACATGTAGATCTTTTAGGAATGTTCCCACTTGCACGAGACTGCCTGCTAAGAATCAAGCAACTATTATGATGCTTAACTTTAAAAATTGATATACTTAAAATTATCCCCATAACATAGATGTCCCTATAAGAATTAACTACAATTTAGTTCATACTGTAATTGATTGACTTTTGGTGGGTCATTGGAGCTTCCGGTAGATTACCCTGGCCTATTCTATTTGCATGTTTACAGTACGAGATCCAATAACCTAACGAAAATCATTTAACTATAAAAAAAAAAAAAAAAAAAAAAAAGTGAAATCCCACATCAATTGGAAGAGGAACAAGTGCCAGCTAGGACGCTGGCTCCGAAGGGGATTGGATTGTGAGATCTAACATCGGTTGGAGATGGAAATGAAACATTCTTTATAAAGGTGTGGAAAACTCTCCCTAGCACACACGTTTTAAAAACCTTGAGGGGAAGCTCGAAAGGGAAAACCCAAAGATGATAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAAAAAACCTCGAGGAAAATTGTAACATCTCGATGCTTTAGTTTAGGAGATGTGCTATCCCCCTGCTCTTTTTGTGGTTGCTGCTCTGATTGATCCAGTAGGCTGCTCATTTATGGTCAACATGCTTGTGATATTTGGAAAAATTCTATATTTGGAAGTGCACATTAAAGGTGAACCATATCTTTAGTATGAAACTATCTGGTTTGTAGAGGTGAAGACTTTGCAGAAGATAGTTTAGATCTTTGAGGCTTAAAAGTTAAAACCAAACTTTCTAAATGGTAAATGTCGGGAGTAAATTGGTGTAGAAGGACTTTTGAGACACAGACTCAAGTCTGGATTTTGTAATGGATCTTTTCCAATCAAATACCTTGGCCATTGAGATGGAACCCCATAGGTTAATCAAAATAAAGTGGAGTATGAAAGGATGGAGATAGAGAGGAAGTGGGATTTGAGCTATGAGAGGATTCTTGAAGGAAAATACTTTCCATATACAACATTTAAAGGTGTCTAGGTACTACACATCTCCCTATCAGCCACAAGTTCTTCCAAGAGTTAGAAGTGAAGGCCTTGTCCTCTAAATAAAATTCTTGAGGAAAAAAGAAGTGGTTTCCTAACCAAAATGGTTAAACTGAATTCAAATAGAAGAATGAATAAGGTCCTGTTCTTTCCTTGATATCTAATTCCTTCCAAATAAGGGCAAGCCAGAAGATGGGGAATCCGCATTTGATTCGGAATAGTAGTCTGTTGGTTAACTTTAATCCAAGATTGAGTTATATTTGTGAAAAGCTTTCTGATGATGACTTCATTGGAAGACAGGACACTTCGTACGTGTAGTCCACTAGACCTTTTGGGTGGGGTTTTCCTCTTCCTCCCTCACTAGGCTGTCTTTTTTTTTCGTTCTTTTTGTTAATAATACAGTGTGAAAAGCAAAATGGAGATCGTAACTTCCTCTTTAATTCTGTCCTCTGTTGTGGAACCGTTGGTCTACACGCTAAAGGATTGAGTTGGTGTCAACTTAGTTTGGCCTTCTTAATCTGCGAACAACCTCCTCCAGTTACTCCCTCTTAAGAGGAGGATAAAGTTCTTTGGAAGATCATTGTAACCGTCCAAGCCCACCGCTAACAGTTCTCTCAAAGTTTTTAAAACGCGTCTACTAGGAAGAGGTTTCCACACCCTTATAAAGAAGGATTCGTTCCTCTCTCCAACCGATGTGGGATCTCACAATCCACTCCCCCTTCGGGGTTCACTGTCCTCGTTGACACTCATTCCTCCAATTGATGTGGGATCTCTCAATCATGGTGAAGACTGATACTATGAGTTAGGGATTATAGGTTTGGAAGGAGTAGGATAACTTTTGTGGGGGTGGTAGGATAGTTTAAAATCATAGGTTTGGAAGGAGTAGGATAACTTTTGTGGGGGTGGTAGGATAGTTTAAAATCAAAGAAATCTCTTGTAACGATAAGGGTTTCAAAATGGAAAAAAAAAAAAAAAAAAAAAAAAACCGCCTTAAATCTCGCTGGAAATAGTATTTCCGGTGAGGCATGTCTTGCCAGCAAGGGCGTATTAATGCCTTAAGTCCCCATATTAAACCCTAGGTACCTTAGTAGCCGTCTTTTCTTTTTGAGTCACTGTTGTACCTGTGAGGGAGGAGCTGAAAGGTTTAGGTGAGGAATCGAAAACGTCGCGAGACTTCGGACTTCTGTGAGTCCTTAGATAGGAGCAAACCAACGCTGAGGTACGTTAGGGCAAGGAAGGACAGACGCACCATCAGGGACGAACGGACGATGACGATTCCACTGGCGACACGGGCGCGGGTCGGTTCGTCGGGTATTTTGCGAGTCGTCTCAGCCGACACCACCACTGGGCCGCGTCCCATTTCGGCCCGAAACCAGTGATGCCTAGACGCATCCAGAAACCCTGCGCCGTTAGTGGTCTTTGCAGCCCATCGGCTTCAGCTTCGTCGGCAGCTCTGTTGCACTCCAGGCTCGGCTCGACTCGGCAGTGTGGCTTAGCGGCTCGACGTACGAATAATATACCAATTCCTAGGTTTCCGACCCTTCTGGAGCCATTCCTACCCTTGTTTCAACCATCTGAGGTCAATAGAACTCCATTTTTTATAAAACAAGTTGTGATAGGGACGTACCTTGGTAGCTAGGCATAAGGGCTAGTTGTGAAATGGCTCTAAGCGTGTCATATGATCTTATAGGGGTAGTTAGGCGTCGGAGTTAGCGGTGCGAGTGACTTCTGCTAAGGTCAAGGAGATAAGTAACCTTACTGTTGGTTTTAGTTATGTATGTATGTTGGTGTGTGCCCTGTGGCCCTTGCATGCACGATGTGTGTTGTTGATGTATGCTAGGTTATATGTTTCTTGCAGTGAAATGCTACGTATGCCATGTATGTGATGTTTATGTCATGACTTGCTACCTTGTATGCATGAGCTTGATTGACGTGTCACGATTGTAATGAGAACTCCGCATGCCATGAATGTGATGACTAGTGTGCTACGATACGCTTACTGTTGTTTAATCCAGTTATGCTATGTAATGCGGCTATGATATGCTTATCCGTTGTTTAACCCAGTTATGCTATGTAATGCGGTGAGGGGATGGAACGTTGTATGTATAATGCCATGGAGGTAAACCTTAGGGACCTCATGCACGCTATGTGCTACGTGCATGGGGTTACTTCCCCGTTATGCTAATGATGGTACGGACGCGTACGTTCGATATTATGTTCGCTATGATATCATGCAGACCCTCCTTTTTCGTGGTGTCCGATATTGTATGTCATACGTACCCGACAAGCCAGGCTCAGGGAGTTTGCATGCGAACTTGCCTGGTGGGTCCACAGTCATGCATGTGGGCCATGTGTGGGAAAGTACCATGTATCCACCCCGCCCGGACAAAGCAAGGGCCTAAGGCCATGGGAAGGAATGGAAGATAGGCCCCCTCTCGTTTTCTTTCTTTAGCACTTGTGCTTATGTATGTGTATTGTATGCGATCGCATGTATCCTAATGTATGTTATATGCTTAATCCCAATAGTGGGGCGACTTACTGGGTATTTCATATAATACTCAAGCTACGTGCTACCTACATTTTCAGGTAAGGGCAAGGCCCCCATGTACGGCTGACGGTGAACGCTGCGAAGGCCATGGAAGTTTTAGGAAGGGCTTGTAGTGTCGTAGGCGTCTTGTTTGGACTCCTTGTTTGGACTCCCTCCGATGATAGTTATTGCAATTATTTCTTCTAGTTATCTATTGATTATTTCTTAGTTAGGCTGTTGTTATTGTTTTTCCCCAGGTATGAACGTATTGTCGTTATTGAGACTGTCTTACATAAACTTTCGTACTTTCGTTATACAAGTACAAGGTAACGACGCTAATTAGGTTAGAGAAAATTAGGGCGTTACATCTCTATTCTTCACACCCCACCATTTTTCTTCAAGATTCTCTTGATGCGACCCAAAACTTCATATTAGCATTTTTCTTCTTCCTCAGTGGTATAAGATGTTATTCATCCAAGAACATGAACTTCCTGTTAGCAACGATATTGTAAATGGGAACATTCTTGGTGATTACATTCAAGTTGCTTCCAAGTTTAGAGCTCATACAGGGGTTGAATATTTCCATACTGCCATGAATGAACGTTGTAAATGTGTAAATGCATTCTCAATCCTTTTCTGTTACTTCTGCTGCAGTTTGATTATCGTTTTGAATCCAACACACCATATATTAGTTTGTTTCGACTTCGTGCATATCGTACTCACATTTGCGTTCTCGGTCATGAATATATTCTTTTTTTCAGGAAGAAAACAGACAAAATTTTGGAAAGTCCAGGTTTCATGGACATCAATTTCTGGCAGGATGGTCTTTGAAGAGAGATTTGAGATTCTGAGCGGTTTTTTGTGGGTATTTTACCGAATTTTGGGATGCAGAAATGAATGTATTGTTCTGGACCTGCTGATGGTTAATTAGCTCAAATTATTCATTATATTTTAGGAATTATAATCTTTGGGGTTGCTCGAAATCTGTCAAAGACTTACTCTTACCCCAGAGTGGATGACTCGAATAGCTCGTAGCATGAGGTCGTATCTCTGGAAACACCGATGCCGGTCACATGCTTCAAAGTACAAAAGGGCGGAG ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGCATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACTGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATGGTGTAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTACAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAACATCGCGAAGATTTTTTGGATGCGCCCGAGGACACTAGCAAGGAATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGCAAATAAAGAAGGCCTTGGATTTCTTGATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATGTCAAAAGGAAGAAAACAGACAAAATTTTGGAAAGTCCAGGTTTCATGGACATCAATTTCTGGCAGGATGGTCTTTGAAGAGAGATTTGAGATTCTGAGCGGTTTTTTGTGGGTATTTTACCGAATTTTGGGATGCAGAAATGAATGTATTGTTCTGGACCTGCTGATGGTTAATTAGCTCAAATTATTCATTATATTTTAGGAATTATAATCTTTGGGGTTGCTCGAAATCTGTCAAAGACTTACTCTTACCCCAGAGTGGATGACTCGAATAGCTCGTAGCATGAGGTCGTATCTCTGGAAACACCGATGCCGGTCACATGCTTCAAAGTACAAAAGGGCGGAG ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGCATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACTGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATGGTGTAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTACAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAACATCGCGAAGATTTTTTGGATGCGCCCGAGGACACTAGCAAGGAATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGCAAATAAAGAAGGCCTTGGATTTCTTGATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATGTCAAAAGGAAGAAAACAGACAAAATTTTGGAAAGTCCAGGTTTCATGGACATCAATTTCTGGCAGGATGGTCTTTGA
BLAST of CmoCh12G001040.1 vs. TrEMBL
Match: A0A0A0LK19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346010 PE=4 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 5.3e-81 Identity = 175/292 (59.93%), Postives = 205/292 (70.21%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TrEMBL
Match: A0A0A0LQN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402010 PE=4 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 7.0e-81 Identity = 164/271 (60.52%), Postives = 201/271 (74.17%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TrEMBL
Match: A0A059AAC3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00315 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 4.6e-40 Identity = 98/238 (41.18%), Postives = 134/238 (56.30%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TrEMBL
Match: A0A059A9T0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39 Identity = 91/223 (40.81%), Postives = 132/223 (59.19%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TrEMBL
Match: A0A059AB47_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39 Identity = 91/223 (40.81%), Postives = 132/223 (59.19%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 117.9 bits (294), Expect = 1.2e-26 Identity = 68/222 (30.63%), Postives = 124/222 (55.86%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 102.8 bits (255), Expect = 3.8e-22 Identity = 66/236 (27.97%), Postives = 112/236 (47.46%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TAIR10
Match: AT5G64950.1 (AT5G64950.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 83.6 bits (205), Expect = 2.4e-16 Identity = 63/228 (27.63%), Postives = 106/228 (46.49%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TAIR10
Match: AT1G61970.1 (AT1G61970.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 83.6 bits (205), Expect = 2.4e-16 Identity = 59/220 (26.82%), Postives = 105/220 (47.73%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. TAIR10
Match: AT3G46950.1 (AT3G46950.1 Mitochondrial transcription termination factor family protein) HSP 1 Score: 83.2 bits (204), Expect = 3.1e-16 Identity = 60/222 (27.03%), Postives = 107/222 (48.20%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. NCBI nr
Match: gi|778670382|ref|XP_004143080.2| (PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus]) HSP 1 Score: 309.3 bits (791), Expect = 7.6e-81 Identity = 175/292 (59.93%), Postives = 205/292 (70.21%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. NCBI nr
Match: gi|449442098|ref|XP_004138819.1| (PREDICTED: uncharacterized protein LOC101219073 [Cucumis sativus]) HSP 1 Score: 308.9 bits (790), Expect = 1.0e-80 Identity = 164/271 (60.52%), Postives = 201/271 (74.17%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. NCBI nr
Match: gi|659089103|ref|XP_008445328.1| (PREDICTED: uncharacterized protein LOC103488393 [Cucumis melo]) HSP 1 Score: 300.1 bits (767), Expect = 4.6e-78 Identity = 167/271 (61.62%), Postives = 194/271 (71.59%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. NCBI nr
Match: gi|659068543|ref|XP_008444984.1| (PREDICTED: uncharacterized protein LOC103488160 [Cucumis melo]) HSP 1 Score: 299.3 bits (765), Expect = 7.9e-78 Identity = 168/271 (61.99%), Postives = 194/271 (71.59%), Query Frame = 1
BLAST of CmoCh12G001040.1 vs. NCBI nr
Match: gi|1009119129|ref|XP_015876211.1| (PREDICTED: uncharacterized protein LOC107412900 [Ziziphus jujuba]) HSP 1 Score: 211.8 bits (538), Expect = 1.7e-51 Identity = 125/294 (42.52%), Postives = 175/294 (59.52%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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