CmoCh11G020370.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G020370.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Phy rapidly regulated 1, putative
Location	Cmo_Chr11 : 13859765 .. 13860133 (+)
Sequence length	369

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATCCCAAATTCAAAGACTCAAACTCGCCATTCAGACCAAGCGAACCACCACTCCTCGCCATAAAGCCCTAATCCTCAACGCATTGCATAAATCTCCTCTCAATCGCAACGCCCGCCGCCGGAGACGCACAAAACCCACCCGCATTGCCTCCGGAAAAGCCGAGGAGAAGGAGGCCGTCGAACGGAAGATTCGCGCGTTGCAGACCATCGTCCCGGGAGGGGAATCGCTCGGAGTTGACAAACTATTCGAACAGACGGCGGAGTATATCATGAATTTGCAGCATCAAGTGAAGGCCATGAGAGCGCTGTCGAGCTTCTTCGAAAGCTTGGAGAAGGAGAAGAGCAAGTGCGGCGGAGGTTGA

mRNA sequence

ATGGGGAAATCCCAAATTCAAAGACTCAAACTCGCCATTCAGACCAAGCGAACCACCACTCCTCGCCATAAAGCCCTAATCCTCAACGCATTGCATAAATCTCCTCTCAATCGCAACGCCCGCCGCCGGAGACGCACAAAACCCACCCGCATTGCCTCCGGAAAAGCCGAGGAGAAGGAGGCCGTCGAACGGAAGATTCGCGCGTTGCAGACCATCGTCCCGGGAGGGGAATCGCTCGGAGTTGACAAACTATTCGAACAGACGGCGGAGTATATCATGAATTTGCAGCATCAAGTGAAGGCCATGAGAGCGCTGTCGAGCTTCTTCGAAAGCTTGGAGAAGGAGAAGAGCAAGTGCGGCGGAGGTTGA

Coding sequence (CDS)

ATGGGGAAATCCCAAATTCAAAGACTCAAACTCGCCATTCAGACCAAGCGAACCACCACTCCTCGCCATAAAGCCCTAATCCTCAACGCATTGCATAAATCTCCTCTCAATCGCAACGCCCGCCGCCGGAGACGCACAAAACCCACCCGCATTGCCTCCGGAAAAGCCGAGGAGAAGGAGGCCGTCGAACGGAAGATTCGCGCGTTGCAGACCATCGTCCCGGGAGGGGAATCGCTCGGAGTTGACAAACTATTCGAACAGACGGCGGAGTATATCATGAATTTGCAGCATCAAGTGAAGGCCATGAGAGCGCTGTCGAGCTTCTTCGAAAGCTTGGAGAAGGAGAAGAGCAAGTGCGGCGGAGGTTGA

Homology

[Close]

BLAST of CmoCh11G020370.1 vs. Swiss-Prot
Match: PAR2_ARATH (Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1


Query: 15  TKRTTTPRHKALILNALHKSPLNRNARRRRRTKPTRIAS----GKAEEKEAVERKIRALQ 74
           TKR++ P   + +  +   +  NR  R+R       ++      + E++E VE KI ALQ
Sbjct: 10  TKRSSPPSPSSAVNTS--STGFNRRTRQRLSDATASVSETDVEDEDEDEEGVEEKIEALQ 69

Query: 75  TIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 122
           TIVPGG  LGVD LFE+TA YI+ LQ Q+ A++ L++F E  EK+  K GG
Sbjct: 70  TIVPGGTELGVDALFEETASYILALQCQINAIKVLTTFLERCEKKDMKFGG 118

[Close]

BLAST of CmoCh11G020370.1 vs. Swiss-Prot
Match: PAR1_ARATH (Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-11
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 15  TKRTTTPRHKALILNALHKSPLNRNARRRRRTKPTRIASGKA---EEKEAVERKIRALQT 74
           T+R+ +P   A + +    +   R  +RR       +   +    EE++ V+ KI ALQ 
Sbjct: 11  TRRSLSPSCSATVKS--RAAGFERRTKRRLSETNASVREDREEAEEEEDEVKEKIEALQR 70

Query: 75  IVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 122
           I+PGG +LGVD LFE+TA YI++LQ Q+K ++ L+SF + +++E  K GG
Sbjct: 71  IIPGGAALGVDALFEETAGYILSLQCQIKTIKVLTSFLQRIDQEDMKFGG 118

[Close]

BLAST of CmoCh11G020370.1 vs. TrEMBL
Match: A0A0A0KGU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423410 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-33
Identity = 92/132 (69.70%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 1   MGKSQIQRLKLAIQTKRTTTPRHKALILNALHKSPLNRNARRRRRTKPTRIA-------- 60
           M K Q Q LK       TTT R K LILNALHKS L+R  R RRR   +RIA        
Sbjct: 1   MDKPQFQTLK------STTTSRQKTLILNALHKSSLHRR-RSRRRVPTSRIADKIHRNHP 60

Query: 61  ---SGKAEEKEAVERKIRALQTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFF 120
              S + +EKEAVERKIRALQ+IVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFF
Sbjct: 61  VFTSEEPDEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFF 120

Query: 121 ESLEKEKSKCGG 122
           ESLEKEKS+CGG
Sbjct: 121 ESLEKEKSECGG 125

[Close]

BLAST of CmoCh11G020370.1 vs. TrEMBL
Match: W9RT05_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021396 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-17
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 52  ASGKAEEKEAVERKIRALQTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFES 111
           +S + +EKE VERKI+ALQ +VPGGESLGV+KLFE+TA YIM LQ Q+KAM+AL+SFFES
Sbjct: 64  SSVEVDEKEEVERKIKALQRVVPGGESLGVEKLFEETASYIMALQCQLKAMKALASFFES 123

Query: 112 LEKEKSKCGG 122
           L+KEK   GG
Sbjct: 124 LDKEKRMFGG 133

[Close]

BLAST of CmoCh11G020370.1 vs. TrEMBL
Match: A0A0B2PW36_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019931 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 57  EEKEAVERKIRALQTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 116
           +++E +ERKI ALQ IVPGGESLGVDKLF++TA YI+ LQ+QVKA+RAL+ FFE LEKEK
Sbjct: 72  DDREEIERKIHALQRIVPGGESLGVDKLFDETAGYILALQYQVKALRALTGFFEKLEKEK 131

Query: 117 SKCGG 122
           +K GG
Sbjct: 132 TKFGG 136

[Close]

BLAST of CmoCh11G020370.1 vs. TrEMBL
Match: I1JJ47_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G286900 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1


Query: 19  TTPRHKALILNALHKSPLNRNARRRRRTKPTRIASG--KAEEKEAVERKIRALQTIVPGG 78
           TTP HK+L +         R+ RR R+    +      + +++E +ERKI ALQ IVPGG
Sbjct: 32  TTPSHKSLHV-------FRRSRRRWRKEVAVKEDEDVDEGDDREEIERKIHALQRIVPGG 91

Query: 79  ESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 122
           ESLGVDKLF++TA YI+ LQ+QVKA+RAL+ FF+ LEKEK+K GG
Sbjct: 92  ESLGVDKLFDETAGYILALQYQVKALRALTGFFDKLEKEKTKFGG 129

[Close]

BLAST of CmoCh11G020370.1 vs. TrEMBL
Match: C6SXX6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1


Query: 19  TTPRHKALILNALHKSPLNRNARRRRRTKPTRIASG--KAEEKEAVERKIRALQTIVPGG 78
           TTP HK+L +         R+ RR R+    +      + +++E +ERKI ALQ IVPGG
Sbjct: 30  TTPSHKSLHV-------FRRSRRRWRKEVAVKEDEDVDEGDDREEIERKIHALQRIVPGG 89

Query: 79  ESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 122
           ESLGVDKLF++TA YI+ LQ+QVKA+RAL+ FF+ LEKEK+K GG
Sbjct: 90  ESLGVDKLFDETAGYILALQYQVKALRALTGFFDKLEKEKTKFGG 127

[Close]

BLAST of CmoCh11G020370.1 vs. TAIR10
Match: AT3G58850.1 (AT3G58850.1 phy rapidly regulated 2)

HSP 1 Score: 73.9 bits (180), Expect = 7.5e-14
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1


Query: 15  TKRTTTPRHKALILNALHKSPLNRNARRRRRTKPTRIAS----GKAEEKEAVERKIRALQ 74
           TKR++ P   + +  +   +  NR  R+R       ++      + E++E VE KI ALQ
Sbjct: 10  TKRSSPPSPSSAVNTS--STGFNRRTRQRLSDATASVSETDVEDEDEDEEGVEEKIEALQ 69

Query: 75  TIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 122
           TIVPGG  LGVD LFE+TA YI+ LQ Q+ A++ L++F E  EK+  K GG
Sbjct: 70  TIVPGGTELGVDALFEETASYILALQCQINAIKVLTTFLERCEKKDMKFGG 118

[Close]

BLAST of CmoCh11G020370.1 vs. TAIR10
Match: AT2G42870.1 (AT2G42870.1 phy rapidly regulated 1)

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-12
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 15  TKRTTTPRHKALILNALHKSPLNRNARRRRRTKPTRIASGKA---EEKEAVERKIRALQT 74
           T+R+ +P   A + +    +   R  +RR       +   +    EE++ V+ KI ALQ 
Sbjct: 11  TRRSLSPSCSATVKS--RAAGFERRTKRRLSETNASVREDREEAEEEEDEVKEKIEALQR 70

Query: 75  IVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEKSKCGG 122
           I+PGG +LGVD LFE+TA YI++LQ Q+K ++ L+SF + +++E  K GG
Sbjct: 71  IIPGGAALGVDALFEETAGYILSLQCQIKTIKVLTSFLQRIDQEDMKFGG 118

[Close]

BLAST of CmoCh11G020370.1 vs. TAIR10
Match: AT3G05800.1 (AT3G05800.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1)

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 35/104 (33.65%), Postives = 50/104 (48.08%), Query Frame = 1


Query: 19  TTPRHKALILNALHKSPLNRNARRRRRTKPTRI---------ASGKAEEKEAVERKIRAL 78
           TT R       A+  S    + RRRR TKP             SG+  +  AV  ++R L
Sbjct: 99  TTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVL 158

Query: 79  QTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLE 114
             +VPG     + +L ++TA+YI  L+ QV+AM ALS     L+
Sbjct: 159 GGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILSELQ 202

[Close]

BLAST of CmoCh11G020370.1 vs. NCBI nr
Match: gi|659097277|ref|XP_008449537.1| (PREDICTED: transcription factor PAR2-like [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 5.2e-33
Identity = 92/133 (69.17%), Postives = 98/133 (73.68%), Query Frame = 1


Query: 1   MGKSQIQRLKLAIQTKRTTTPRHKALILNALHKSPLNRNARRRRRTKPTRIASGK----- 60
           M K Q Q LK       TTT R K LILNALHKS L+R  R RRR   +RI + K     
Sbjct: 1   MDKPQFQTLK------STTTSRQKTLILNALHKSSLHRR-RSRRRVPTSRIIADKIHRNH 60

Query: 61  -------AEEKEAVERKIRALQTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSF 120
                  A+EKEAVERKIRALQ+IVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSF
Sbjct: 61  PVFTYEEADEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSF 120

Query: 121 FESLEKEKSKCGG 122
           FESLEKEKS+CGG
Sbjct: 121 FESLEKEKSECGG 126

[Close]

BLAST of CmoCh11G020370.1 vs. NCBI nr
Match: gi|449444983|ref|XP_004140253.1| (PREDICTED: transcription factor PAR2-like [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 6.8e-33
Identity = 92/132 (69.70%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 1   MGKSQIQRLKLAIQTKRTTTPRHKALILNALHKSPLNRNARRRRRTKPTRIA-------- 60
           M K Q Q LK       TTT R K LILNALHKS L+R  R RRR   +RIA        
Sbjct: 1   MDKPQFQTLK------STTTSRQKTLILNALHKSSLHRR-RSRRRVPTSRIADKIHRNHP 60

Query: 61  ---SGKAEEKEAVERKIRALQTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFF 120
              S + +EKEAVERKIRALQ+IVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFF
Sbjct: 61  VFTSEEPDEKEAVERKIRALQSIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFF 120

Query: 121 ESLEKEKSKCGG 122
           ESLEKEKS+CGG
Sbjct: 121 ESLEKEKSECGG 125

[Close]

BLAST of CmoCh11G020370.1 vs. NCBI nr
Match: gi|703120720|ref|XP_010102162.1| (hypothetical protein L484_021396 [Morus notabilis])

HSP 1 Score: 95.9 bits (237), Expect = 5.2e-17
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 52  ASGKAEEKEAVERKIRALQTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFES 111
           +S + +EKE VERKI+ALQ +VPGGESLGV+KLFE+TA YIM LQ Q+KAM+AL+SFFES
Sbjct: 64  SSVEVDEKEEVERKIKALQRVVPGGESLGVEKLFEETASYIMALQCQLKAMKALASFFES 123

Query: 112 LEKEKSKCGG 122
           L+KEK   GG
Sbjct: 124 LDKEKRMFGG 133

[Close]

BLAST of CmoCh11G020370.1 vs. NCBI nr
Match: gi|470140199|ref|XP_004305830.1| (PREDICTED: transcription factor PAR1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 56  AEEKEAVERKIRALQTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKE 115
           A+++E VERKI ALQ IVPGGESLGVDKLFE+TA YIM LQ Q+KAM+AL+SFFE LEKE
Sbjct: 78  ADDREEVERKIEALQRIVPGGESLGVDKLFEETAGYIMTLQVQLKAMKALASFFEGLEKE 137

Query: 116 KSKCG 121
           K K G
Sbjct: 138 KKKFG 142

[Close]

BLAST of CmoCh11G020370.1 vs. NCBI nr
Match: gi|734348775|gb|KHN11958.1| (hypothetical protein glysoja_019931 [Glycine soja])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 1


Query: 57  EEKEAVERKIRALQTIVPGGESLGVDKLFEQTAEYIMNLQHQVKAMRALSSFFESLEKEK 116
           +++E +ERKI ALQ IVPGGESLGVDKLF++TA YI+ LQ+QVKA+RAL+ FFE LEKEK
Sbjct: 72  DDREEIERKIHALQRIVPGGESLGVDKLFDETAGYILALQYQVKALRALTGFFEKLEKEK 131

Query: 117 SKCGG 122
           +K GG
Sbjct: 132 TKFGG 136

The following BLAST results are available for this feature:

BLAST of CmoCh11G020370.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAR2_ARATH	1.3e-12	41.44	Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1	[more]
PAR1_ARATH	7.3e-11	37.27	Transcription factor PAR1 OS=Arabidopsis thaliana GN=PAR1 PE=1 SV=1	[more]

BLAST of CmoCh11G020370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGU6_CUCSA	4.7e-33	69.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G423410 PE=4 SV=1	[more]
W9RT05_9ROSA	3.6e-17	70.00	Uncharacterized protein OS=Morus notabilis GN=L484_021396 PE=4 SV=1	[more]
A0A0B2PW36_GLYSO	1.1e-16	70.77	Uncharacterized protein OS=Glycine soja GN=glysoja_019931 PE=4 SV=1	[more]
I1JJ47_SOYBN	1.4e-16	52.38	Uncharacterized protein OS=Glycine max GN=GLYMA_02G286900 PE=4 SV=1	[more]
C6SXX6_SOYBN	1.4e-16	52.38	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of CmoCh11G020370.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58850.1	7.5e-14	41.44	phy rapidly regulated 2	[more]
AT2G42870.1	4.1e-12	37.27	phy rapidly regulated 1	[more]
AT3G05800.1	3.4e-06	33.65	AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1	[more]

BLAST of CmoCh11G020370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097277\|ref\|XP_008449537.1\|	5.2e-33	69.17	PREDICTED: transcription factor PAR2-like [Cucumis melo]	[more]
gi\|449444983\|ref\|XP_004140253.1\|	6.8e-33	69.70	PREDICTED: transcription factor PAR2-like [Cucumis sativus]	[more]
gi\|703120720\|ref\|XP_010102162.1\|	5.2e-17	70.00	hypothetical protein L484_021396 [Morus notabilis]	[more]
gi\|470140199\|ref\|XP_004305830.1\|	6.8e-17	75.38	PREDICTED: transcription factor PAR1 [Fragaria vesca subsp. vesca]	[more]
gi\|734348775\|gb\|KHN11958.1\|	1.5e-16	70.77	hypothetical protein glysoja_019931 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G020370	CmoCh11G020370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G020370.1	CmoCh11G020370.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G020370.1.exon.1	CmoCh11G020370.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G020370.1.CDS.1	CmoCh11G020370.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 37..122 score: 6.6
None	No IPR available	PANTHER	PTHR33124:SF3	EXPRESSED PROTEIN	coord: 37..122 score: 6.6