CmoCh11G012640.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012640.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Methyl-CpG-binding domain protein 4) (3.2.2.-)
Location	Cmo_Chr11 : 8062073 .. 8063360 (+)
Sequence length	408

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGGGAAATAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGTATTTCTGTGTCAACTTTTTACTCATAATTGACCCTCTGTTTTCTGATTATGCACCCTTAGTCCTGTAGGTTTCATTTTTGCTGAAAATTTTCAGTTTGACTCAGTCTGCGAGTTCATTTTGAAAATTGCAGGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCGCAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGGAAGTAATTTAGATCATCCTTTTAAACTCATTGATTTATAAGTTCTATCTCTTCCATGCTTATTGAGCTTGGGACGTGTATTAAAATGAATTTGATTTGAGACAGGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAAGTATTGCCTAAAGATCACATGCTTAATTATTACTGGGAGTTTCTCCACAGCATAAAGCACCTGCTCTGATCTTATCTGAGGCAACTGTAGATGGTTCGACACGAGAGAAGCTGTAAATTTCCCGGTCTACTTAACATATATTTTTTGGTACGTTACTCTTTTGACATAATTTTGTTTTGTTAATGTTTATGTTGTTGTTGGGAGTCTGTGAGACCCTTATATCAACACATACTAGAAAGGGGAGAAATGGAAGCTCTCCTCCAAAAGCTAATTAGGCTGTAAGCTTGTATTGAGTGAAGTAGCGTGAGGGTCATGTTATGTTTTGAAAGGTCTGGTAGCTTTATTATGGGCTGTGCCTTCGCTTTTGACTTTTGAATATCAGTTTAGAAAGGAAGGATGATTAGCTTACCTATGATCTCTTTCTTTCTTGCTTTGGTAGGTTCAAAGTTCCTTTCACTTTAACCCGTATGGTCTTATCTTGATGAATTGTGGTTAGAAGTTGGCAAATGATGTAAGTGAAAACACCGGTAAGCTAATTACTATTTCTGGGTATTCAAATAGTTAATCACTGGCATAGCTAAAATTCGGTTGACATGGGCAATAATTTGTTCCACTTAAATCTATTATATAGACGCAGAGATGGATGCTTTGTGAACTCAGCCTCAAAATTTGTTGTTAAATTTAATTTGATTTATTGCATTCATTGTAAGCATTCTTGCTTTATTTTTCATAGTTCAGCCGTAA

mRNA sequence

ATGGTTGGGGAAATAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCGCAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGGAAGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAACATAAAGCACCTGCTCTGATCTTATCTGAGGCAACTGTAGATGGTTCGACACGAGAGAAGCTGTTCAAAGTTCCTTTCACTTTAACCCGTATGCCGTAA

Coding sequence (CDS)

ATGGTTGGGGAAATAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCGCAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGGAAGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAACATAAAGCACCTGCTCTGATCTTATCTGAGGCAACTGTAGATGGTTCGACACGAGAGAAGCTGTTCAAAGTTCCTTTCACTTTAACCCGTATGCCGTAA

Homology

[Close]

BLAST of CmoCh11G012640.1 vs. Swiss-Prot
Match: MBD4L_ARATH (Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana GN=MBD4L PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-23
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  KT     + VI  LF LC D K+A EV +E+IE++I+PLGLQ+KR+  IQRL
Sbjct: 329 LVICMLLNKTSGAQTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRL 388

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK 106
           S  YL+ESW+HVTQL GVGKY ADA+AIFC G W   K
Sbjct: 389 SLEYLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVK 426

[Close]

BLAST of CmoCh11G012640.1 vs. Swiss-Prot
Match: MBD4_HUMAN (Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 30/96 (31.25%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +I  I   +T    A  V+ K     P  + A       + ++++PLGL   R+ TI + 
Sbjct: 460 LIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKF 519

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           S+ YL + W +  +L G+GKYG D++ IFC   W +
Sbjct: 520 SDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQ 555

[Close]

BLAST of CmoCh11G012640.1 vs. Swiss-Prot
Match: MBD4_MOUSE (Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 29/96 (30.21%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +I  I   +T    A  V+ +     P  + A       + ++++PLGL   R+ TI + 
Sbjct: 434 LIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKF 493

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           S+ YL + W +  +L G+GKYG D++ IFC   W +
Sbjct: 494 SDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQ 529

[Close]

BLAST of CmoCh11G012640.1 vs. TrEMBL
Match: A0A0A0KRW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630730 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-25
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLG  RKRS T+ RL
Sbjct: 371 LVICMLLNRTSGQQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGFYRKRSRTMHRL 430

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFC 98
           SEMYLKESWSHVTQLPGVGKY A    + C
Sbjct: 431 SEMYLKESWSHVTQLPGVGKYLAYPCTLSC 460

[Close]

BLAST of CmoCh11G012640.1 vs. TrEMBL
Match: B9I4Y1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s03470g PE=4 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-22
Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    A+ V+  LFTLCPD K+A  V+ E+IE  I+ LGLQ++R+  +QRL
Sbjct: 111 LVICMLLNRTAGTRAERVVADLFTLCPDAKAATGVATEEIERAIKSLGLQKRRAKMVQRL 170

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SE YL+E W+HVTQLPGVGKY ADA+AIFCTG W +
Sbjct: 171 SEDYLEEDWTHVTQLPGVGKYAADAYAIFCTGKWEQ 206

[Close]

BLAST of CmoCh11G012640.1 vs. TrEMBL
Match: A0A087H7Z2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G088200 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-22
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  KT     + VI  LF LCPD K+A EV +++IE +I+PLGLQ+KR+  IQR 
Sbjct: 374 LVICMLLNKTSGAQTRRVIADLFALCPDAKTATEVEEKEIETLIKPLGLQKKRAKMIQRF 433

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK 106
           S  YL+ESW+HVTQL GVGKY ADA+AIFC G W   K
Sbjct: 434 SHEYLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVK 471

[Close]

BLAST of CmoCh11G012640.1 vs. TrEMBL
Match: R0HYC9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013672mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-22
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  KT     + VI  LFTLCPD K+A EV +++IE +I+PLGLQ+KR+  IQR 
Sbjct: 340 LVICMLLNKTSGAQTRGVISDLFTLCPDAKTATEVEEKEIESLIKPLGLQKKRAKMIQRF 399

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK 106
           S  YL ESW+HVTQL G+GKY ADA+AIFC G W   K
Sbjct: 400 SLEYLNESWTHVTQLHGIGKYAADAYAIFCNGNWDRVK 437

[Close]

BLAST of CmoCh11G012640.1 vs. TrEMBL
Match: S8E2C7_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_08394 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.2e-22
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    A  V+ KLF LCP  K+A EV+++ IED IR LGLQRKR+  IQR 
Sbjct: 253 LVICMLLNQTTGRQAFRVLSKLFELCPTAKAATEVARDDIEDAIRCLGLQRKRAEMIQRF 312

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW 102
           SE Y+ E W+HVT+LPG+GKY ADA+AIFCTG W
Sbjct: 313 SEEYMSEEWTHVTELPGIGKYAADAYAIFCTGRW 346

[Close]

BLAST of CmoCh11G012640.1 vs. TAIR10
Match: AT3G07930.3 (AT3G07930.3 DNA glycosylase superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 8.0e-25
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  KT     + VI  LF LC D K+A EV +E+IE++I+PLGLQ+KR+  IQRL
Sbjct: 329 LVICMLLNKTSGAQTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRL 388

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK 106
           S  YL+ESW+HVTQL GVGKY ADA+AIFC G W   K
Sbjct: 389 SLEYLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVK 426

[Close]

BLAST of CmoCh11G012640.1 vs. NCBI nr
Match: gi|659121238|ref|XP_008460559.1| (PREDICTED: uncharacterized protein LOC103499353 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 4.7e-35
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLGL RKRS T+ RL
Sbjct: 371 LVICMLLNRTSGRQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGLYRKRSRTMHRL 430

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW+E
Sbjct: 431 SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWSE 466

[Close]

BLAST of CmoCh11G012640.1 vs. NCBI nr
Match: gi|449449218|ref|XP_004142362.1| (PREDICTED: methyl-CpG-binding domain protein 4 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLG  RKRS T+ RL
Sbjct: 371 LVICMLLNRTSGQQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGFYRKRSRTMHRL 430

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW+E
Sbjct: 431 SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWSE 466

[Close]

BLAST of CmoCh11G012640.1 vs. NCBI nr
Match: gi|700197193|gb|KGN52370.1| (hypothetical protein Csa_5G630730 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 7.5e-25
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLG  RKRS T+ RL
Sbjct: 371 LVICMLLNRTSGQQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGFYRKRSRTMHRL 430

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFC 98
           SEMYLKESWSHVTQLPGVGKY A    + C
Sbjct: 431 SEMYLKESWSHVTQLPGVGKYLAYPCTLSC 460

[Close]

BLAST of CmoCh11G012640.1 vs. NCBI nr
Match: gi|743913730|ref|XP_011000785.1| (PREDICTED: methyl-CpG-binding domain protein 4-like [Populus euphratica])

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-23
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    A+ V+  LFTLCPD K+A  V+ E+IE  I+ LGLQ++R+  +QRL
Sbjct: 108 LVICMLLNRTAGTRAERVVADLFTLCPDAKAATGVATEEIERAIKSLGLQKRRAKMVQRL 167

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SE YL+E W+HVTQLPGVGKY ADAHAIFCTG W +
Sbjct: 168 SEDYLQEDWTHVTQLPGVGKYAADAHAIFCTGKWEQ 203

[Close]

BLAST of CmoCh11G012640.1 vs. NCBI nr
Match: gi|743940556|ref|XP_011014756.1| (PREDICTED: methyl-CpG-binding domain protein 4-like [Populus euphratica])

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-23
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    A+ V+  LFTLCPD K+A  V+ E+IE  I+ LGLQ++R+  +QRL
Sbjct: 108 LVICMLLNRTAGTRAERVVADLFTLCPDAKAATGVATEEIERAIKSLGLQKRRAKMVQRL 167

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SE YL+E W+HVTQLPGVGKY ADAHAIFCTG W +
Sbjct: 168 SEDYLQEDWTHVTQLPGVGKYAADAHAIFCTGKWEQ 203

The following BLAST results are available for this feature:

BLAST of CmoCh11G012640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD4L_ARATH	1.4e-23	55.10	Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana GN=MBD4...	[more]
MBD4_HUMAN	5.8e-09	31.25	Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1	[more]
MBD4_MOUSE	2.9e-08	30.21	Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1 SV=1	[more]

BLAST of CmoCh11G012640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRW9_CUCSA	5.2e-25	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630730 PE=4 SV=1	[more]
B9I4Y1_POPTR	3.2e-22	54.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s03470g PE=4 SV=2	[more]
A0A087H7Z2_ARAAL	4.1e-22	54.08	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G088200 PE=4 SV=1	[more]
R0HYC9_9BRAS	5.4e-22	54.08	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013672mg PE=4 SV=1	[more]
S8E2C7_9LAMI	9.2e-22	55.32	Uncharacterized protein OS=Genlisea aurea GN=M569_08394 PE=4 SV=1	[more]

BLAST of CmoCh11G012640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07930.3	8.0e-25	55.10	DNA glycosylase superfamily protein	[more]

BLAST of CmoCh11G012640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121238\|ref\|XP_008460559.1\|	4.7e-35	76.04	PREDICTED: uncharacterized protein LOC103499353 [Cucumis melo]	[more]
gi\|449449218\|ref\|XP_004142362.1\|	1.4e-34	75.00	PREDICTED: methyl-CpG-binding domain protein 4 [Cucumis sativus]	[more]
gi\|700197193\|gb\|KGN52370.1\|	7.5e-25	66.67	hypothetical protein Csa_5G630730 [Cucumis sativus]	[more]
gi\|743913730\|ref\|XP_011000785.1\|	9.2e-23	55.21	PREDICTED: methyl-CpG-binding domain protein 4-like [Populus euphratica]	[more]
gi\|743940556\|ref\|XP_011014756.1\|	9.2e-23	55.21	PREDICTED: methyl-CpG-binding domain protein 4-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003265	HhH-GPD_domain
IPR011257	DNA_glycosylase

Vocabulary: **Biological Process**
Term	Definition
GO:0006284	base-excision repair
GO:0006281	DNA repair

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G012640	CmoCh11G012640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012640.1	CmoCh11G012640.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012640.1.exon.1	CmoCh11G012640.1.exon.1	exon
CmoCh11G012640.1.exon.2	CmoCh11G012640.1.exon.2	exon
CmoCh11G012640.1.exon.3	CmoCh11G012640.1.exon.3	exon
CmoCh11G012640.1.exon.4	CmoCh11G012640.1.exon.4	exon
CmoCh11G012640.1.exon.5	CmoCh11G012640.1.exon.5	exon
CmoCh11G012640.1.exon.6	CmoCh11G012640.1.exon.6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012640.1.CDS.1	CmoCh11G012640.1.CDS.1	CDS
CmoCh11G012640.1.CDS.2	CmoCh11G012640.1.CDS.2	CDS
CmoCh11G012640.1.CDS.3	CmoCh11G012640.1.CDS.3	CDS
CmoCh11G012640.1.CDS.4	CmoCh11G012640.1.CDS.4	CDS
CmoCh11G012640.1.CDS.5	CmoCh11G012640.1.CDS.5	CDS
CmoCh11G012640.1.CDS.6	CmoCh11G012640.1.CDS.6	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003265	HhH-GPD domain	PFAM	PF00730	HhH-GPD	coord: 15..92 score: 3.
IPR011257	DNA glycosylase	GENE3D	G3DSA:1.10.340.30		coord: 9..102 score: 2.2
IPR011257	DNA glycosylase	unknown	SSF48150	DNA-glycosylase	coord: 8..103 score: 5.02
None	No IPR available	PANTHER	PTHR15074	5-METHYLCYTOSINE G/T MISMATCH-SPECIFIC DNA GLYCOSYLASE	coord: 22..103 score: 3.8