CmoCh11G012640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Methyl-CpG-binding domain protein 4) (3.2.2.-)
Location	Cmo_Chr11 : 8062073 .. 8063360 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGGGAAATAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGTATTTCTGTGTCAACTTTTTACTCATAATTGACCCTCTGTTTTCTGATTATGCACCCTTAGTCCTGTAGGTTTCATTTTTGCTGAAAATTTTCAGTTTGACTCAGTCTGCGAGTTCATTTTGAAAATTGCAGGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCGCAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGGAAGTAATTTAGATCATCCTTTTAAACTCATTGATTTATAAGTTCTATCTCTTCCATGCTTATTGAGCTTGGGACGTGTATTAAAATGAATTTGATTTGAGACAGGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAAGTATTGCCTAAAGATCACATGCTTAATTATTACTGGGAGTTTCTCCACAGCATAAAGCACCTGCTCTGATCTTATCTGAGGCAACTGTAGATGGTTCGACACGAGAGAAGCTGTAAATTTCCCGGTCTACTTAACATATATTTTTTGGTACGTTACTCTTTTGACATAATTTTGTTTTGTTAATGTTTATGTTGTTGTTGGGAGTCTGTGAGACCCTTATATCAACACATACTAGAAAGGGGAGAAATGGAAGCTCTCCTCCAAAAGCTAATTAGGCTGTAAGCTTGTATTGAGTGAAGTAGCGTGAGGGTCATGTTATGTTTTGAAAGGTCTGGTAGCTTTATTATGGGCTGTGCCTTCGCTTTTGACTTTTGAATATCAGTTTAGAAAGGAAGGATGATTAGCTTACCTATGATCTCTTTCTTTCTTGCTTTGGTAGGTTCAAAGTTCCTTTCACTTTAACCCGTATGGTCTTATCTTGATGAATTGTGGTTAGAAGTTGGCAAATGATGTAAGTGAAAACACCGGTAAGCTAATTACTATTTCTGGGTATTCAAATAGTTAATCACTGGCATAGCTAAAATTCGGTTGACATGGGCAATAATTTGTTCCACTTAAATCTATTATATAGACGCAGAGATGGATGCTTTGTGAACTCAGCCTCAAAATTTGTTGTTAAATTTAATTTGATTTATTGCATTCATTGTAAGCATTCTTGCTTTATTTTTCATAGTTCAGCCGTAA

mRNA sequence

ATGGTTGGGGAAATAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCGCAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGGAAGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAACATAAAGCACCTGCTCTGATCTTATCTGAGGCAACTGTAGATGGTTCGACACGAGAGAAGCTGTTCAAAGTTCCTTTCACTTTAACCCGTATGCCGTAA

Coding sequence (CDS)

ATGGTTGGGGAAATAAACTCCATGATACTATATATTATCGCAACCAAAACCTTCTATCATTTTGCAAAAGAAGTGATACCTAAACTCTTCACTTTGTGTCCCGATCCAAAGTCTGCTTTGGAGGTATCGCAAGAGCAGATAGAAGATATTATTCGACCTCTTGGTTTACAAAGAAAAAGATCACTTACAATTCAGCGTTTATCTGAGATGTATTTAAAAGAAAGTTGGAGTCATGTCACTCAGCTTCCTGGTGTTGGGAAGTATGGAGCTGATGCACATGCAATATTTTGCACTGGATATTGGACCGAACATAAAGCACCTGCTCTGATCTTATCTGAGGCAACTGTAGATGGTTCGACACGAGAGAAGCTGTTCAAAGTTCCTTTCACTTTAACCCGTATGCCGTAA

Homology

[Close]

BLAST of CmoCh11G012640 vs. Swiss-Prot
Match: MBD4L_ARATH (Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana GN=MBD4L PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-23
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  KT     + VI  LF LC D K+A EV +E+IE++I+PLGLQ+KR+  IQRL
Sbjct: 329 LVICMLLNKTSGAQTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRL 388

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK 106
           S  YL+ESW+HVTQL GVGKY ADA+AIFC G W   K
Sbjct: 389 SLEYLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVK 426

[Close]

BLAST of CmoCh11G012640 vs. Swiss-Prot
Match: MBD4_HUMAN (Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-09
Identity = 30/96 (31.25%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +I  I   +T    A  V+ K     P  + A       + ++++PLGL   R+ TI + 
Sbjct: 460 LIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKF 519

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           S+ YL + W +  +L G+GKYG D++ IFC   W +
Sbjct: 520 SDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQ 555

[Close]

BLAST of CmoCh11G012640 vs. Swiss-Prot
Match: MBD4_MOUSE (Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 29/96 (30.21%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +I  I   +T    A  V+ +     P  + A       + ++++PLGL   R+ TI + 
Sbjct: 434 LIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKF 493

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           S+ YL + W +  +L G+GKYG D++ IFC   W +
Sbjct: 494 SDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQ 529

[Close]

BLAST of CmoCh11G012640 vs. TrEMBL
Match: A0A0A0KRW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630730 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-25
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLG  RKRS T+ RL
Sbjct: 371 LVICMLLNRTSGQQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGFYRKRSRTMHRL 430

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFC 98
           SEMYLKESWSHVTQLPGVGKY A    + C
Sbjct: 431 SEMYLKESWSHVTQLPGVGKYLAYPCTLSC 460

[Close]

BLAST of CmoCh11G012640 vs. TrEMBL
Match: B9I4Y1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s03470g PE=4 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-22
Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    A+ V+  LFTLCPD K+A  V+ E+IE  I+ LGLQ++R+  +QRL
Sbjct: 111 LVICMLLNRTAGTRAERVVADLFTLCPDAKAATGVATEEIERAIKSLGLQKRRAKMVQRL 170

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SE YL+E W+HVTQLPGVGKY ADA+AIFCTG W +
Sbjct: 171 SEDYLEEDWTHVTQLPGVGKYAADAYAIFCTGKWEQ 206

[Close]

BLAST of CmoCh11G012640 vs. TrEMBL
Match: A0A087H7Z2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G088200 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-22
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  KT     + VI  LF LCPD K+A EV +++IE +I+PLGLQ+KR+  IQR 
Sbjct: 374 LVICMLLNKTSGAQTRRVIADLFALCPDAKTATEVEEKEIETLIKPLGLQKKRAKMIQRF 433

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK 106
           S  YL+ESW+HVTQL GVGKY ADA+AIFC G W   K
Sbjct: 434 SHEYLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVK 471

[Close]

BLAST of CmoCh11G012640 vs. TrEMBL
Match: R0HYC9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013672mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-22
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  KT     + VI  LFTLCPD K+A EV +++IE +I+PLGLQ+KR+  IQR 
Sbjct: 340 LVICMLLNKTSGAQTRGVISDLFTLCPDAKTATEVEEKEIESLIKPLGLQKKRAKMIQRF 399

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK 106
           S  YL ESW+HVTQL G+GKY ADA+AIFC G W   K
Sbjct: 400 SLEYLNESWTHVTQLHGIGKYAADAYAIFCNGNWDRVK 437

[Close]

BLAST of CmoCh11G012640 vs. TrEMBL
Match: S8E2C7_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_08394 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.2e-22
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    A  V+ KLF LCP  K+A EV+++ IED IR LGLQRKR+  IQR 
Sbjct: 253 LVICMLLNQTTGRQAFRVLSKLFELCPTAKAATEVARDDIEDAIRCLGLQRKRAEMIQRF 312

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW 102
           SE Y+ E W+HVT+LPG+GKY ADA+AIFCTG W
Sbjct: 313 SEEYMSEEWTHVTELPGIGKYAADAYAIFCTGRW 346

[Close]

BLAST of CmoCh11G012640 vs. TAIR10
Match: AT3G07930.3 (AT3G07930.3 DNA glycosylase superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 8.0e-25
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  KT     + VI  LF LC D K+A EV +E+IE++I+PLGLQ+KR+  IQRL
Sbjct: 329 LVICMLLNKTSGAQTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRL 388

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTEHK 106
           S  YL+ESW+HVTQL GVGKY ADA+AIFC G W   K
Sbjct: 389 SLEYLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVK 426

[Close]

BLAST of CmoCh11G012640 vs. NCBI nr
Match: gi|659121238|ref|XP_008460559.1| (PREDICTED: uncharacterized protein LOC103499353 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 4.7e-35
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLGL RKRS T+ RL
Sbjct: 371 LVICMLLNRTSGRQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGLYRKRSRTMHRL 430

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW+E
Sbjct: 431 SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWSE 466

[Close]

BLAST of CmoCh11G012640 vs. NCBI nr
Match: gi|449449218|ref|XP_004142362.1| (PREDICTED: methyl-CpG-binding domain protein 4 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLG  RKRS T+ RL
Sbjct: 371 LVICMLLNRTSGQQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGFYRKRSRTMHRL 430

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYW+E
Sbjct: 431 SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWSE 466

[Close]

BLAST of CmoCh11G012640 vs. NCBI nr
Match: gi|700197193|gb|KGN52370.1| (hypothetical protein Csa_5G630730 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 7.5e-25
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    AKEVIPKLF+LCP+PK+ LEVS+EQIEDIIRPLG  RKRS T+ RL
Sbjct: 371 LVICMLLNRTSGQQAKEVIPKLFSLCPNPKATLEVSREQIEDIIRPLGFYRKRSRTMHRL 430

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFC 98
           SEMYLKESWSHVTQLPGVGKY A    + C
Sbjct: 431 SEMYLKESWSHVTQLPGVGKYLAYPCTLSC 460

[Close]

BLAST of CmoCh11G012640 vs. NCBI nr
Match: gi|743913730|ref|XP_011000785.1| (PREDICTED: methyl-CpG-binding domain protein 4-like [Populus euphratica])

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-23
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    A+ V+  LFTLCPD K+A  V+ E+IE  I+ LGLQ++R+  +QRL
Sbjct: 108 LVICMLLNRTAGTRAERVVADLFTLCPDAKAATGVATEEIERAIKSLGLQKRRAKMVQRL 167

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SE YL+E W+HVTQLPGVGKY ADAHAIFCTG W +
Sbjct: 168 SEDYLQEDWTHVTQLPGVGKYAADAHAIFCTGKWEQ 203

[Close]

BLAST of CmoCh11G012640 vs. NCBI nr
Match: gi|743940556|ref|XP_011014756.1| (PREDICTED: methyl-CpG-binding domain protein 4-like [Populus euphratica])

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-23
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1


Query: 8   MILYIIATKTFYHFAKEVIPKLFTLCPDPKSALEVSQEQIEDIIRPLGLQRKRSLTIQRL 67
           +++ ++  +T    A+ V+  LFTLCPD K+A  V+ E+IE  I+ LGLQ++R+  +QRL
Sbjct: 108 LVICMLLNRTAGTRAERVVADLFTLCPDAKAATGVATEEIERAIKSLGLQKRRAKMVQRL 167

Query: 68  SEMYLKESWSHVTQLPGVGKYGADAHAIFCTGYWTE 104
           SE YL+E W+HVTQLPGVGKY ADAHAIFCTG W +
Sbjct: 168 SEDYLQEDWTHVTQLPGVGKYAADAHAIFCTGKWEQ 203

The following BLAST results are available for this feature:

BLAST of CmoCh11G012640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD4L_ARATH	1.4e-23	55.10	Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana GN=MBD4...	[more]
MBD4_HUMAN	5.8e-09	31.25	Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1	[more]
MBD4_MOUSE	2.9e-08	30.21	Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1 SV=1	[more]

BLAST of CmoCh11G012640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRW9_CUCSA	5.2e-25	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630730 PE=4 SV=1	[more]
B9I4Y1_POPTR	3.2e-22	54.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s03470g PE=4 SV=2	[more]
A0A087H7Z2_ARAAL	4.1e-22	54.08	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G088200 PE=4 SV=1	[more]
R0HYC9_9BRAS	5.4e-22	54.08	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013672mg PE=4 SV=1	[more]
S8E2C7_9LAMI	9.2e-22	55.32	Uncharacterized protein OS=Genlisea aurea GN=M569_08394 PE=4 SV=1	[more]

BLAST of CmoCh11G012640 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07930.3	8.0e-25	55.10	DNA glycosylase superfamily protein	[more]

BLAST of CmoCh11G012640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121238\|ref\|XP_008460559.1\|	4.7e-35	76.04	PREDICTED: uncharacterized protein LOC103499353 [Cucumis melo]	[more]
gi\|449449218\|ref\|XP_004142362.1\|	1.4e-34	75.00	PREDICTED: methyl-CpG-binding domain protein 4 [Cucumis sativus]	[more]
gi\|700197193\|gb\|KGN52370.1\|	7.5e-25	66.67	hypothetical protein Csa_5G630730 [Cucumis sativus]	[more]
gi\|743913730\|ref\|XP_011000785.1\|	9.2e-23	55.21	PREDICTED: methyl-CpG-binding domain protein 4-like [Populus euphratica]	[more]
gi\|743940556\|ref\|XP_011014756.1\|	9.2e-23	55.21	PREDICTED: methyl-CpG-binding domain protein 4-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003265	HhH-GPD_domain
IPR011257	DNA_glycosylase

Vocabulary: **Biological Process**
Term	Definition
GO:0006284	base-excision repair
GO:0006281	DNA repair

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012640.1	CmoCh11G012640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003265	HhH-GPD domain	PFAM	PF00730	HhH-GPD	coord: 15..92 score: 3.
IPR011257	DNA glycosylase	GENE3D	G3DSA:1.10.340.30		coord: 9..102 score: 2.2
IPR011257	DNA glycosylase	unknown	SSF48150	DNA-glycosylase	coord: 8..103 score: 5.02
None	No IPR available	PANTHER	PTHR15074	5-METHYLCYTOSINE G/T MISMATCH-SPECIFIC DNA GLYCOSYLASE	coord: 22..103 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G012640	Cucumber (Chinese Long) v3	cmocucB0097
CmoCh11G012640	Cucumber (Chinese Long) v3	cmocucB0109
CmoCh11G012640	Cucurbita moschata (Rifu)	cmocmoB048
CmoCh11G012640	Cucumber (Gy14) v1	cgycmoB0050
CmoCh11G012640	Cucumber (Gy14) v1	cgycmoB0051
CmoCh11G012640	Cucurbita maxima (Rimu)	cmacmoB079
CmoCh11G012640	Cucurbita maxima (Rimu)	cmacmoB119
CmoCh11G012640	Wild cucumber (PI 183967)	cmocpiB086
CmoCh11G012640	Wild cucumber (PI 183967)	cmocpiB099
CmoCh11G012640	Cucumber (Chinese Long) v2	cmocuB083
CmoCh11G012640	Cucumber (Chinese Long) v2	cmocuB096
CmoCh11G012640	Melon (DHL92) v3.5.1	cmomeB103
CmoCh11G012640	Cucurbita pepo (Zucchini)	cmocpeB130
CmoCh11G012640	Cucumber (Gy14) v2	cgybcmoB036
CmoCh11G012640	Cucumber (Gy14) v2	cgybcmoB049
CmoCh11G012640	Melon (DHL92) v3.6.1	cmomedB111
CmoCh11G012640	Silver-seed gourd	carcmoB0632