CmoCh11G012530.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G012530.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA/RNA polymerases superfamily protein
Location	Cmo_Chr11 : 7939023 .. 7940478 (+)
Sequence length	1167

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGACAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAGGAAGTCCCTAACACCCTCTGCTTCCTGGAAGCACGGGTGACCGAATTGAGTGGGAAAGTCAGAGAAATCGGCGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAACTGATGTTTTGAGTGACCTCGCTCGAAGAAAGAGTTGCTCCTACGAGCAGCCCAAAACCGTCTGGTAATCCGGATAGCTCTGTCGCACACAAAGAGGGACGTGGCGAAGAGTTCGACGTGCTGCAAAATACAATAATGAGTTTGTTCAATGAATTAGCTGATGAATTCAGAACAATAATCGACGACATCCAAGAAAGGATGACCTCCATGAGCACTCGAATTGAAGTGACCAGGAAAGCCGTGGAAGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGATTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAGGAGTTGGAAAACTTCATCTTTGATGTCGAACAGTACTTCAAAACCACAACGGCTTGTACTGACAACCAGAAGGTGACTGTAGCCTCGATGTATCTCATAGATGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCAAGAATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAAAGAGTTGAGGGAACAATTCCTCCCCGAAAATGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACATACTGGAAACATACGAGACTATGTCAGACAGTTCTCAACCTTGATGTTGGATATCAGCGGCACAGCAGAGAAGGACAAGGTGTTCTTCTTTATAAATGGGTTACAGCCGTGGGCCAAAACAAAGTTACATGAGAACAAGGTCCAAACCCTAGCTGCCGCAATGGCCTGCGCCGAGAGACTCCTAGACTGTGGGAACGAAGCAGGATCCCAAAAAGAATGACACCGGTCCCAAACACTGGGGCAAAACATACAAGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAACGGAGGAAACGACAAACTAAACGGATGGACGGATAGACCTCCTCAGAACAATCAAGTGGGGACATCTCGAGGACCTTACCATCAAAGAAACCACCCGACGACACCTTTACAATGCATGCTGTGTAAAGGTCCCCACAAAGTATCCTACTGTCCTCATCGGGCCTCTCTCATTGTGCTCCAAGTGTCCATTCAAGAGAGCAATGATGCAAGGGTCGAGACTATGCTAGACAAGAAGGAAGATCACGACAACCCCCGAATGGGCGCACTTAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAACTCTCGACCGAGCAAGAGCACCCTGATAGACTGA

mRNA sequence

ATGTCGGCGACAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAGGAAGTCCCTAACACCCTCTGCTTCCTGGAAGCACGGGTGACCGAATTGAGTGGGAAAGTCAGAGAAATCGGCGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAACTGATAACAATAATCGACGACATCCAAGAAAGGATGACCTCCATGAGCACTCGAATTGAAGTGACCAGGAAAGCCGTGGAAGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGATTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAGGAGTTGGAAAACTTCATCTTTGATGTCGAACAGTACTTCAAAACCACAACGGCTTGTACTGACAACCAGAAGGTGACTGTAGCCTCGATGTATCTCATAGATGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCAAGAATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAAAGAGTTGAGGGAACAATTCCTCCCCGAAAATGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACATACTGGAAACATACGAGACTATGTCAGACAGTTCTCAACCTTGATGTTGGATATCAGCGGCACAGCAGAGAAGGACAAGGATCCCAAAAAGAATGACACCGGTCCCAAACACTGGGGCAAAACATACAAGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAACGGAGGAAACGACAAACTAAACGGATGGACGGATAGACCTCCTCAGAACAATCAAGTGGGGACATCTCGAGGACCTTACCATCAAAGAAACCACCCGACGACACCTTTACAATGCATGCTGTGTAAAGGTCCCCACAAAGTATCCTACTGTCCTCATCGGGCCTCTCTCATTGTGCTCCAAGTGTCCATTCAAGAGAGCAATGATGCAAGGGTCGAGACTATGCTAGACAAGAAGGAAGATCACGACAACCCCCGAATGGGCGCACTTAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAACTCTCGACCGAGCAAGAGCACCCTGATAGACTGA

Coding sequence (CDS)

ATGTCGGCGACAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAGGAAGTCCCTAACACCCTCTGCTTCCTGGAAGCACGGGTGACCGAATTGAGTGGGAAAGTCAGAGAAATCGGCGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAACTGATAACAATAATCGACGACATCCAAGAAAGGATGACCTCCATGAGCACTCGAATTGAAGTGACCAGGAAAGCCGTGGAAGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGATTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAGGAGTTGGAAAACTTCATCTTTGATGTCGAACAGTACTTCAAAACCACAACGGCTTGTACTGACAACCAGAAGGTGACTGTAGCCTCGATGTATCTCATAGATGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCAAGAATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAAAGAGTTGAGGGAACAATTCCTCCCCGAAAATGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACATACTGGAAACATACGAGACTATGTCAGACAGTTCTCAACCTTGATGTTGGATATCAGCGGCACAGCAGAGAAGGACAAGGATCCCAAAAAGAATGACACCGGTCCCAAACACTGGGGCAAAACATACAAGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAACGGAGGAAACGACAAACTAAACGGATGGACGGATAGACCTCCTCAGAACAATCAAGTGGGGACATCTCGAGGACCTTACCATCAAAGAAACCACCCGACGACACCTTTACAATGCATGCTGTGTAAAGGTCCCCACAAAGTATCCTACTGTCCTCATCGGGCCTCTCTCATTGTGCTCCAAGTGTCCATTCAAGAGAGCAATGATGCAAGGGTCGAGACTATGCTAGACAAGAAGGAAGATCACGACAACCCCCGAATGGGCGCACTTAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAACTCTCGACCGAGCAAGAGCACCCTGATAGACTGA

Homology

[Close]

BLAST of CmoCh11G012530.1 vs. TrEMBL
Match: A5AYX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 103/303 (33.99%), Postives = 161/303 (53.14%), Query Frame = 1


Query: 103 KLRFPDPRAFKGNRDAKELENFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTK 162
           ++  P P  F G RDAKEL+NF++ +E+YF+      +  KV   ++YL D+A LWWR +
Sbjct: 8   RVEVPKPHTFSGKRDAKELDNFLWHMERYFEAIALTDEAAKVRTVTLYLTDNATLWWRRR 67

Query: 163 VQDIKNGLCTIDSWEDLKKELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLD 222
             DI+ G CTID+W+  K+E++ QF PE+  ++A + +  LKHTG+IR+YV++FSTLML+
Sbjct: 68  FADIERGTCTIDTWDAFKREIKRQFYPEDVAYLARKSLKRLKHTGSIREYVKEFSTLMLE 127

Query: 223 ISGTAEKDKDPKKNDTGPKHWGK------TYKPPGHRNGS---PNRPNGGNDKLNGWTDR 282
           I   AE++      D   + W +            +R G    P  P+ GN    G   R
Sbjct: 128 IPNMAEEELLFNFMDN-LQSWAEQELRRCVESLVDYRRGDSSKPKPPSKGNQAKGGGDKR 187

Query: 283 PP-QNNQVGTSRGPYHQ-------RNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQ 342
                ++ G+S+GP  +       R        C LC GPH    CP R +L        
Sbjct: 188 SQGHTSKEGSSKGPSSKDGKGKDKRKEFMPRTNCFLCDGPHWARDCPKRKAL-------- 247

Query: 343 ESNDARVETMLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKST 389
                    M+++KE   + ++G+L+ L+AL+ K  PK    KGLM+V+  +N + +K+ 
Sbjct: 248 -------NAMIEEKEQEGDAKVGSLQLLNALKAKPMPKTPQNKGLMYVETLVNGKATKA- 293

[Close]

BLAST of CmoCh11G012530.1 vs. TrEMBL
Match: A5B1A3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.8e-39
Identity = 113/363 (31.13%), Postives = 182/363 (50.14%), Query Frame = 1


Query: 64  LITIIDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKL---------RFPDPRAFKG 123
           ++T+   ++ RM +++ R++   + +    A    A S ++           P P  F G
Sbjct: 81  VMTMFASVESRMEALAARMDARDQEIRQELAIYKTAVSARVMATHEAPRVEVPKPHTFSG 140

Query: 124 NRDAKELENFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTID 183
            RDAKEL+NF++ +E+YF+      +  KV  A++Y  D+A LWWR +  DI+ G CTID
Sbjct: 141 KRDAKELDNFLWHMERYFEAIALMDEATKVRTATLYFTDNATLWWRRRFADIERGTCTID 200

Query: 184 SWEDLKKELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKD---- 243
           +W+  K+E++ QF PE+  +IA + +  LKHTG+IR+YV++FSTLML+I   AE++    
Sbjct: 201 TWDAFKREIKRQFYPEDVAYIARKSLKRLKHTGSIREYVKEFSTLMLEIPNMAEEELLFN 260

Query: 244 --------KDPKKNDTGPKHWGKT---------YKPPGHRNGSPNRPNGGNDKLNGWTDR 303
                    + +    G +    T         YK     +  P  P+ GN    G   R
Sbjct: 261 FMDNLQSWAEQELRRRGVQDLATTMAVAESLVDYKRGD--SSKPKPPSKGNQAKGGGDKR 320

Query: 304 PPQNN-QVGTSRGP-------YHQRNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQ 363
              +  + G+S+GP         +R   T    C LC GPH     P R +L        
Sbjct: 321 SQGHTPKEGSSKGPSGKDGKGKDKRKEFTPRTNCFLCDGPHWARDYPKRKAL-------- 380

Query: 364 ESNDARVETMLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKST 389
                    M+++KE   + +MG+L+ L+AL+ K  PK    KGLM+V+A +N + +K+ 
Sbjct: 381 -------NAMIEEKEQEGDAKMGSLQLLNALKAKPMPKTPQSKGLMYVEALVNGKVTKA- 425

[Close]

BLAST of CmoCh11G012530.1 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 112/354 (31.64%), Postives = 184/354 (51.98%), Query Frame = 1


Query: 63  ELITIIDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELE 122
           +++T+   ++ RM +++ R++   + +    A    A   ++  P P  F G RDAKEL+
Sbjct: 117 KVMTMFASVESRMKALAARMDARDQEIRQELAIYKIAAP-RVEVPKPHTFSGKRDAKELD 176

Query: 123 NFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKE 182
           NF++ +E+YF+      +  KV +A++YL D+A LWWR    DI+ G CTID+W+  K+E
Sbjct: 177 NFLWHMERYFEAIALMDEATKVRIATLYLTDNATLWWRRWFADIERGTCTIDTWDAFKRE 236

Query: 183 LREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKH 242
           ++ QF PE+  ++A + +  LKHTG+IRDYV++FSTLML+I   AE++      D     
Sbjct: 237 IKRQFYPEDVAYLARKSLKRLKHTGSIRDYVKEFSTLMLEIPNMAEEELLFNFIDNLQSW 296

Query: 243 WGKTYKPPG----------------HRNG---SPNRPNGGNDKLNGWTDRPPQ--NNQVG 302
             K  +  G                +R G    P  P+ GN ++ G  D+  Q   ++ G
Sbjct: 297 AEKELRRYGVQDLATAMAVAESLVDYRRGDSSKPKPPSKGN-QVKGRGDKRLQGHTSKEG 356

Query: 303 TSRGP-------YHQRNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQESNDARVET 362
           +S+GP         +R   T    C LC GPH    CP R +L                 
Sbjct: 357 SSKGPSGKDGKGKDKRKEFTPRTNCFLCDGPHWARDCPKRKAL---------------NA 416

Query: 363 MLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
           M+++KE   + ++G+L+ L+ L+ K   K    K LM+V+A +N + +K+ L+D
Sbjct: 417 MIEEKEQEGDAKVGSLQLLNXLKAKSMFKTPQSKRLMYVEALVNGKATKA-LVD 452

[Close]

BLAST of CmoCh11G012530.1 vs. TrEMBL
Match: A5B1F0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034229 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 102/300 (34.00%), Postives = 160/300 (53.33%), Query Frame = 1


Query: 103 KLRFPDPRAFKGNRDAKELENFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTK 162
           ++  P P  F G RDAKEL+NF++ +E YF+      +  KV  A++YL D+A LWW  +
Sbjct: 130 RVEVPKPHTFSGKRDAKELDNFLWHMESYFEAIALMDEATKVRTATLYLTDNATLWWHRR 189

Query: 163 VQDIKNGLCTIDSWEDLKKELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLD 222
             DI+ G CTID+W+  ++E++ QF PE+  ++A + +  LKHTG+IR+YV++FSTLML+
Sbjct: 190 FADIEKGTCTIDTWDAFRREIKRQFYPEDVAYLARKSMKRLKHTGSIREYVKEFSTLMLE 249

Query: 223 ISGTAEKDKDPKKNDTGPKHWGKTYKPPGHRNGSPNR------PNGGNDK-LNGWTDRPP 282
           I   AE++      D       +  +  G ++ +  R        GG DK   G T +  
Sbjct: 250 IPNMAEEELLFNFMDNLQSWVEQELRRRGVQDLATARAVAESLAKGGGDKGSRGHTSKE- 309

Query: 283 QNNQVGTSRGPYHQRNHP-------TTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQESN 342
                G+S+GP  +           T    C LC GPH    CP R +L           
Sbjct: 310 -----GSSKGPSGKDGKDKDKWKEFTPRTNCFLCDGPHWARDCPKRKAL----------- 369

Query: 343 DARVETMLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
                 M+++KE   + ++G+L+ L+AL+ K  PK    KGLM+V+A +N + +K+ L+D
Sbjct: 370 ----NAMIEEKEQEGDAKVGSLQLLNALKAKPMPKTTQSKGLMYVEALVNGKATKA-LVD 407

[Close]

BLAST of CmoCh11G012530.1 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.9e-38
Identity = 111/362 (30.66%), Postives = 179/362 (49.45%), Query Frame = 1


Query: 63  ELITIIDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKL---------RFPDPRAFK 122
           +++T+   ++ RM +++ R++V  + +    A    A S ++           P    F 
Sbjct: 102 KVMTMFASVESRMEALAARMDVRDQEIRQELAIYKTAVSARVMATHEAPRVEVPKLHTFS 161

Query: 123 GNRDAKELENFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTI 182
           G RDAKEL+NF++ +E+YF+      +  KV  A++YL D+A LWWR +  DI+ G CTI
Sbjct: 162 GKRDAKELDNFLWHMERYFEAIALTDEATKVRTATLYLTDNATLWWRRRFADIERGTCTI 221

Query: 183 DSWEDLKKELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDP 242
           D+W+  K+E++ QF PE+  ++A + +  LKHTG+IR+YV++FSTLML+I   AE++   
Sbjct: 222 DTWDAFKREIKRQFYPEDVAYLARKNLKRLKHTGSIREYVKEFSTLMLEIPNMAEEELLF 281

Query: 243 KKNDTGPKHWGKTYKPPG----------------HRNG---SPNRPNGGNDKLNGWTDRP 302
              D       +  +  G                +R G    P  P+ GN    G   R 
Sbjct: 282 NFMDNLQSWAEQELRRRGVQDLATAMAVAESLVDYRKGDSSKPKPPSKGNQAKGGGDKRS 341

Query: 303 PQNN-QVGTSRGP-------YHQRNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQE 362
             +  + G+S+GP         +R   T    C LC GPH    CP R +L         
Sbjct: 342 QGHTPKEGSSKGPSGKDGKGKDKRKEFTPRTNCFLCDGPHXARDCPKRKAL--------- 401

Query: 363 SNDARVETMLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTL 389
                   M+++K    + +MG+L  L AL+ K  PK    K LM+V+  +N + +K+ L
Sbjct: 402 ------NAMIEEKXQEGDAKMGSLXLLXALKAKXMPKTPQSKXLMYVETLVNGKATKA-L 447

[Close]

BLAST of CmoCh11G012530.1 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 233.8 bits (595), Expect = 5.1e-58
Identity = 141/357 (39.50%), Postives = 201/357 (56.30%), Query Frame = 1


Query: 68  IDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENFIFD 127
           ++ ++  M  ++T++ +T +AVE   A        +++ P+PRA+ G RDAKELENF+FD
Sbjct: 281 VEALKIEMGQINTKLAITMRAVENRPAVPVGGDYGRMKVPEPRAYGGARDAKELENFLFD 340

Query: 128 VEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKELREQF 187
           +EQYF+     ++  KVT+A+MYL +DAKLWWR+K +DIKN  C ID+W+ L+KEL+ QF
Sbjct: 341 MEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQF 400

Query: 188 LPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGKT- 247
           LPEN  +IA   +  L+ TGN+RDYV+ FS LMLDI   +EKDK     + G K W +T 
Sbjct: 401 LPENVDYIARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLE-GLKPWARTE 460

Query: 248 -----------------------YKPPGHRNGSPNRPNGGNDK---------LNGWTDRP 307
                                   + P +R   P+  N  + +           G   R 
Sbjct: 461 LQRQRVQDLASALGAAERLMDYSTESPINRRPQPSPSNANSSRPFRPANLPRPGGSDSRK 520

Query: 308 PQNNQVGTSRGPYHQRNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSI--QESNDARV 367
           P N +    R P      P  PL C LC GPH+V  CPH+ +L  LQ SI  QE    R 
Sbjct: 521 PPNTREPPPRNPNAFGFRP-RPLTCFLCNGPHRVGECPHKTALSALQASIRSQEHEGGRE 580

Query: 368 ETMLDKKEDHDNPRMGALKFLSALQ-RKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
           E +   +E  D  ++GAL+FL+AL  + V+ ++  EKGLMFVDA IN + +KS ++D
Sbjct: 581 EVV---EEGEDGAQVGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVD 632

[Close]

BLAST of CmoCh11G012530.1 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 142/353 (40.23%), Postives = 199/353 (56.37%), Query Frame = 1


Query: 75  MTSMSTRIEVTRKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENFIFDVEQYFKT 134
           M  ++T++ +T +AVE   A        +++ P+PRA+ G RDAKELENF+FD+EQYF+ 
Sbjct: 1   MGQINTKLAITMRAVENRPAVPMGGDYGRMKVPEPRAYGGARDAKELENFLFDMEQYFRA 60

Query: 135 TTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKELREQFLPENAGH 194
               ++  KVT+A+MYL +DAKLWWR+K +DIKN  C ID+W+ L+KEL+ QFLPEN  +
Sbjct: 61  IKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQFLPENVDY 120

Query: 195 IAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGKT-------- 254
           IA   +  L+ TGN+RDYV+ FS LMLDI   +EKDK     + G K W +T        
Sbjct: 121 IARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLE-GLKPWARTELQRQRVQ 180

Query: 255 ----------------YKPPGHRNGSPNRPNGGNDKLNGWTDRPPQNNQVGTS--RGPYH 314
                            + P +R   P+  N  + +      RP    + G S  R P +
Sbjct: 181 DLASALGAAERLMDYSTESPINRRPQPSPSNANSSR----PFRPANLPRPGGSDNRKPPN 240

Query: 315 QRNHP----------TTPLQCMLCKGPHKVSYCPHRASLIVLQVSI--QESNDARVETML 374
            R  P            PL C LC GPH+V  CPH+ +L  LQ SI  QE    R E + 
Sbjct: 241 TREPPPRNPNAFGFRPRPLTCFLCNGPHRVGECPHKTALSALQASIRSQEHEGGREEVV- 300

Query: 375 DKKEDHDNPRMGALKFLSALQ-RKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
             +E  D  ++GAL+FL+AL  + V+ ++  EKGLMFVDA IN + +KS ++D
Sbjct: 301 --EEGEDGAQVGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVD 345

[Close]

BLAST of CmoCh11G012530.1 vs. NCBI nr
Match: gi|1009165187|ref|XP_015900908.1| (PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba])

HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54
Identity = 137/360 (38.06%), Postives = 202/360 (56.11%), Query Frame = 1


Query: 68  IDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENFIFD 127
           ++ ++  M  ++T++ +T +AVE   A        +++ P+PRA+ G RDAKELENF+FD
Sbjct: 99  VEALKIEMGQINTKLAITMRAVENRPAVPVGGDYGRMKVPEPRAYGGARDAKELENFLFD 158

Query: 128 VEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKELREQF 187
           +EQYF+     ++  KVT+A+MYL +DAKLWWR+K +DIKN  C ID+W+ L+KEL+ Q 
Sbjct: 159 MEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQS 218

Query: 188 LPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGKT- 247
           LP+N  +IA   +  L+ TGN+RDYV+ FS LMLDI   +EKDK     + G K W +T 
Sbjct: 219 LPKNVDYIARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLE-GLKPWARTE 278

Query: 248 -----------------------YKPPGHRNGSPNRPNGGNDKLNGWTDRPPQNNQVGTS 307
                                   + P +R   P+  N  + +      RP    ++G S
Sbjct: 279 LQRQRVQDLASALGAAERLMDYSTESPINRRPQPSPSNANSSR----PFRPANLPRLGGS 338

Query: 308 --RGPYHQRNHP----------TTPLQCMLCKGPHKVSYCPHRASLIVLQVSI--QESND 367
             R P + R  P            PL C LC GPH+V  CPH+ +L  LQ +I  QE   
Sbjct: 339 DNRKPPNTREPPPWNPNAFGFRPRPLTCFLCNGPHRVGECPHKTALSALQAAIRSQEHEG 398

Query: 368 ARVETMLDKKEDHDNPRMGALKFLSALQ-RKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
            R E +   +E  D  ++GAL+FL+AL  + V+ ++  EKGLM +DA IN + +KS ++D
Sbjct: 399 GREEVV---EEGEDGAQVGALRFLNALNGQVVQARKTNEKGLMLMDAAINGKAAKSVMVD 450

[Close]

BLAST of CmoCh11G012530.1 vs. NCBI nr
Match: gi|731424323|ref|XP_010662836.1| (PREDICTED: uncharacterized protein LOC104882234 [Vitis vinifera])

HSP 1 Score: 174.5 bits (441), Expect = 3.7e-40
Identity = 118/352 (33.52%), Postives = 181/352 (51.42%), Query Frame = 1


Query: 68  IDDIQERMTSMSTRIEVTRKAV-EGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENFIF 127
           IDD +E + S    I + +KAV +G T G      +K+R P+P+ F GNR+AKELENF++
Sbjct: 132 IDDFKETLQSYGEDIAIFKKAVLQGSTLGPE--APSKVRVPEPKGFNGNRNAKELENFLW 191

Query: 128 DVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQ-DIKNGLCTIDSWEDLKKELRE 187
           D+EQ+FK      D +KV++ SMYL  DAKLWWRT+V+ D+++G   I +WE LKKEL++
Sbjct: 192 DIEQFFKAAHV-PDGEKVSITSMYLTGDAKLWWRTRVEDDVESGRPQITTWETLKKELKD 251

Query: 188 QFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGK 247
           QFLP N   +A E +  L+HTG++R+YV++FS+LMLDI   +E+DK      +G + W +
Sbjct: 252 QFLPTNTTWVAKEALKRLRHTGSVREYVKEFSSLMLDIKNMSEEDK-LFNFMSGLQEWAQ 311

Query: 248 T----------------------YKPPG--------HRNGSPNRPNGGNDKLNGWTDRPP 307
           T                      YK  G           G     N G  K + W     
Sbjct: 312 TELRRQGVRDLPAAMATTDCLVDYKMGGAISTTQRPRSEGDKKAKNEGKTKKSDWKKHNK 371

Query: 308 QNNQVGTSRGPYHQRNHPTT-PLQCMLCKGPHKVSYCPHRASLIVLQVSIQESNDARVET 367
           +  + G       +    TT  + C +C GPH+   CP R  L  L V++ +  D+  +T
Sbjct: 372 KPAEWGKPVEKTTKVVQQTTRMIGCFICNGPHRAKDCPKREKLSAL-VTVDDKGDSDPDT 431

Query: 368 MLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTL 387
                    +PR+  L+ L+ +  +      ++K L+ +   +N    K+ L
Sbjct: 432 ---------SPRVNPLQLLNVIHGETP----VQKSLLHIHVVVNGVQVKALL 465

[Close]

BLAST of CmoCh11G012530.1 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 174.5 bits (441), Expect = 3.7e-40
Identity = 112/279 (40.14%), Postives = 152/279 (54.48%), Query Frame = 1


Query: 146 VASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKELREQFLPENAGHIAMEKIVALKH 205
           +A+MYL +DAKLWWR+K +DIKN  C ID+W+ L+KEL+ QFLPEN  +IA   +  L+ 
Sbjct: 1   MATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQFLPENVDYIARRHLRELRQ 60

Query: 206 TGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGKT------------------- 265
           TGN+RDYV+ FS LMLDI   +EKDK     + G K W +T                   
Sbjct: 61  TGNVRDYVKAFSALMLDIRDMSEKDKLFYFLE-GLKPWARTELQRQRVQDLASALGAAKR 120

Query: 266 -----YKPPGHRNGSPNRPNGGNDK---------LNGWTDRPPQNNQVGTSRGPYHQRNH 325
                 + P +R   P+  N  + +           G  +R P N +      P      
Sbjct: 121 LMDYSTESPINRRPQPSPSNANSSRPFRPANLPRPGGSDNRKPSNTREPPPWNPNAFGFR 180

Query: 326 PTTPLQCMLCKGPHKVSYCPHRASLIVLQVSI--QESNDARVETMLDKKEDHDNPRMGAL 385
           P  PL C LC GPH+V  CPH+ SL  LQ SI  QE    R E +   +E  D  ++GAL
Sbjct: 181 P-RPLTCFLCNGPHRVGECPHKTSLSALQASIRSQEHEGGREEVV---EEGEDGAQVGAL 240

Query: 386 KFLSALQ-RKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
           +FL+AL  + V+ ++  EKGLMFVDATIN + +KS ++D
Sbjct: 241 RFLNALNGQVVQARKTNEKGLMFVDATINGKAAKSVMVD 274

The following BLAST results are available for this feature:

BLAST of CmoCh11G012530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G012530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AYX1_VITVI	2.2e-39	33.99	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1	[more]
A5B1A3_VITVI	4.8e-39	31.13	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1	[more]
A5BDH9_VITVI	2.4e-38	31.64	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1	[more]
A5B1F0_VITVI	2.4e-38	34.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034229 PE=4 SV=1	[more]
A5BX03_VITVI	6.9e-38	30.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1	[more]

BLAST of CmoCh11G012530.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G012530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009175511\|ref\|XP_015868924.1\|	5.1e-58	39.50	PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba]	[more]
gi\|1009181571\|ref\|XP_015872243.1\|	1.3e-56	40.23	PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba]	[more]
gi\|1009165187\|ref\|XP_015900908.1\|	1.5e-54	38.06	PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba]	[more]
gi\|731424323\|ref\|XP_010662836.1\|	3.7e-40	33.52	PREDICTED: uncharacterized protein LOC104882234 [Vitis vinifera]	[more]
gi\|1009161831\|ref\|XP_015899105.1\|	3.7e-40	40.14	PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G012530	CmoCh11G012530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012530.1	CmoCh11G012530.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012530.1.exon.1	CmoCh11G012530.1.exon.1	exon
CmoCh11G012530.1.exon.2	CmoCh11G012530.1.exon.2	exon
CmoCh11G012530.1.exon.3	CmoCh11G012530.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G012530.1.CDS.1	CmoCh11G012530.1.CDS.1	CDS
CmoCh11G012530.1.CDS.2	CmoCh11G012530.1.CDS.2	CDS
CmoCh11G012530.1.CDS.3	CmoCh11G012530.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 146..225 score: 4.2