CmoCh11G012530 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA/RNA polymerases superfamily protein
LocationCmo_Chr11 : 7939023 .. 7940478 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCGACAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAGGAAGTCCCTAACACCCTCTGCTTCCTGGAAGCACGGGTGACCGAATTGAGTGGGAAAGTCAGAGAAATCGGCGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAACTGATGTTTTGAGTGACCTCGCTCGAAGAAAGAGTTGCTCCTACGAGCAGCCCAAAACCGTCTGGTAATCCGGATAGCTCTGTCGCACACAAAGAGGGACGTGGCGAAGAGTTCGACGTGCTGCAAAATACAATAATGAGTTTGTTCAATGAATTAGCTGATGAATTCAGAACAATAATCGACGACATCCAAGAAAGGATGACCTCCATGAGCACTCGAATTGAAGTGACCAGGAAAGCCGTGGAAGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGATTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAGGAGTTGGAAAACTTCATCTTTGATGTCGAACAGTACTTCAAAACCACAACGGCTTGTACTGACAACCAGAAGGTGACTGTAGCCTCGATGTATCTCATAGATGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCAAGAATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAAAGAGTTGAGGGAACAATTCCTCCCCGAAAATGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACATACTGGAAACATACGAGACTATGTCAGACAGTTCTCAACCTTGATGTTGGATATCAGCGGCACAGCAGAGAAGGACAAGGTGTTCTTCTTTATAAATGGGTTACAGCCGTGGGCCAAAACAAAGTTACATGAGAACAAGGTCCAAACCCTAGCTGCCGCAATGGCCTGCGCCGAGAGACTCCTAGACTGTGGGAACGAAGCAGGATCCCAAAAAGAATGACACCGGTCCCAAACACTGGGGCAAAACATACAAGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAACGGAGGAAACGACAAACTAAACGGATGGACGGATAGACCTCCTCAGAACAATCAAGTGGGGACATCTCGAGGACCTTACCATCAAAGAAACCACCCGACGACACCTTTACAATGCATGCTGTGTAAAGGTCCCCACAAAGTATCCTACTGTCCTCATCGGGCCTCTCTCATTGTGCTCCAAGTGTCCATTCAAGAGAGCAATGATGCAAGGGTCGAGACTATGCTAGACAAGAAGGAAGATCACGACAACCCCCGAATGGGCGCACTTAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAACTCTCGACCGAGCAAGAGCACCCTGATAGACTGA

mRNA sequence

ATGTCGGCGACAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAGGAAGTCCCTAACACCCTCTGCTTCCTGGAAGCACGGGTGACCGAATTGAGTGGGAAAGTCAGAGAAATCGGCGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAACTGATAACAATAATCGACGACATCCAAGAAAGGATGACCTCCATGAGCACTCGAATTGAAGTGACCAGGAAAGCCGTGGAAGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGATTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAGGAGTTGGAAAACTTCATCTTTGATGTCGAACAGTACTTCAAAACCACAACGGCTTGTACTGACAACCAGAAGGTGACTGTAGCCTCGATGTATCTCATAGATGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCAAGAATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAAAGAGTTGAGGGAACAATTCCTCCCCGAAAATGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACATACTGGAAACATACGAGACTATGTCAGACAGTTCTCAACCTTGATGTTGGATATCAGCGGCACAGCAGAGAAGGACAAGGATCCCAAAAAGAATGACACCGGTCCCAAACACTGGGGCAAAACATACAAGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAACGGAGGAAACGACAAACTAAACGGATGGACGGATAGACCTCCTCAGAACAATCAAGTGGGGACATCTCGAGGACCTTACCATCAAAGAAACCACCCGACGACACCTTTACAATGCATGCTGTGTAAAGGTCCCCACAAAGTATCCTACTGTCCTCATCGGGCCTCTCTCATTGTGCTCCAAGTGTCCATTCAAGAGAGCAATGATGCAAGGGTCGAGACTATGCTAGACAAGAAGGAAGATCACGACAACCCCCGAATGGGCGCACTTAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAACTCTCGACCGAGCAAGAGCACCCTGATAGACTGA

Coding sequence (CDS)

ATGTCGGCGACAAAGTCGACACCCAAAGCACAAGCCGACCGGCTTACGCTAATAGAGGAGGAAATGCTGTTCCTCAAGGAAGTCCCTAACACCCTCTGCTTCCTGGAAGCACGGGTGACCGAATTGAGTGGGAAAGTCAGAGAAATCGGCGCAATGGGCAACCGCCTGGATGGGTTGCCAATCGCAGAACTGATAACAATAATCGACGACATCCAAGAAAGGATGACCTCCATGAGCACTCGAATTGAAGTGACCAGGAAAGCCGTGGAAGGCGTCACGGCTGGGCAAACTAATGCAGGATCCAACAAACTAAGATTCCCAGACCCTAGAGCCTTCAAAGGGAATCGGGACGCCAAGGAGTTGGAAAACTTCATCTTTGATGTCGAACAGTACTTCAAAACCACAACGGCTTGTACTGACAACCAGAAGGTGACTGTAGCCTCGATGTATCTCATAGATGACGCCAAACTGTGGTGGCGTACGAAGGTGCAAGACATCAAGAATGGATTGTGCACCATCGACTCATGGGAGGACCTCAAGAAAGAGTTGAGGGAACAATTCCTCCCCGAAAATGCAGGACATATAGCAATGGAGAAAATAGTAGCCCTGAAACATACTGGAAACATACGAGACTATGTCAGACAGTTCTCAACCTTGATGTTGGATATCAGCGGCACAGCAGAGAAGGACAAGGATCCCAAAAAGAATGACACCGGTCCCAAACACTGGGGCAAAACATACAAGCCACCAGGTCATCGAAATGGAAGCCCCAACAGACCGAACGGAGGAAACGACAAACTAAACGGATGGACGGATAGACCTCCTCAGAACAATCAAGTGGGGACATCTCGAGGACCTTACCATCAAAGAAACCACCCGACGACACCTTTACAATGCATGCTGTGTAAAGGTCCCCACAAAGTATCCTACTGTCCTCATCGGGCCTCTCTCATTGTGCTCCAAGTGTCCATTCAAGAGAGCAATGATGCAAGGGTCGAGACTATGCTAGACAAGAAGGAAGATCACGACAACCCCCGAATGGGCGCACTTAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCGACAATAAACTCTCGACCGAGCAAGAGCACCCTGATAGACTGA
Homology
[Close]
BLAST of CmoCh11G012530 vs. TrEMBL
Match: A5AYX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 103/303 (33.99%), Postives = 161/303 (53.14%), Query Frame = 1 

Query: 103 KLRFPDPRAFKGNRDAKELENFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTK 162
           ++  P P  F G RDAKEL+NF++ +E+YF+      +  KV   ++YL D+A LWWR +
Sbjct: 8   RVEVPKPHTFSGKRDAKELDNFLWHMERYFEAIALTDEAAKVRTVTLYLTDNATLWWRRR 67

Query: 163 VQDIKNGLCTIDSWEDLKKELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLD 222
             DI+ G CTID+W+  K+E++ QF PE+  ++A + +  LKHTG+IR+YV++FSTLML+
Sbjct: 68  FADIERGTCTIDTWDAFKREIKRQFYPEDVAYLARKSLKRLKHTGSIREYVKEFSTLMLE 127

Query: 223 ISGTAEKDKDPKKNDTGPKHWGK------TYKPPGHRNGS---PNRPNGGNDKLNGWTDR 282
           I   AE++      D   + W +            +R G    P  P+ GN    G   R
Sbjct: 128 IPNMAEEELLFNFMDN-LQSWAEQELRRCVESLVDYRRGDSSKPKPPSKGNQAKGGGDKR 187

Query: 283 PP-QNNQVGTSRGPYHQ-------RNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQ 342
                ++ G+S+GP  +       R        C LC GPH    CP R +L        
Sbjct: 188 SQGHTSKEGSSKGPSSKDGKGKDKRKEFMPRTNCFLCDGPHWARDCPKRKAL-------- 247

Query: 343 ESNDARVETMLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKST 389
                    M+++KE   + ++G+L+ L+AL+ K  PK    KGLM+V+  +N + +K+ 
Sbjct: 248 -------NAMIEEKEQEGDAKVGSLQLLNALKAKPMPKTPQNKGLMYVETLVNGKATKA- 293

[Close]
BLAST of CmoCh11G012530 vs. TrEMBL
Match: A5B1A3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.8e-39
Identity = 113/363 (31.13%), Postives = 182/363 (50.14%), Query Frame = 1 

Query: 64  LITIIDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKL---------RFPDPRAFKG 123
           ++T+   ++ RM +++ R++   + +    A    A S ++           P P  F G
Sbjct: 81  VMTMFASVESRMEALAARMDARDQEIRQELAIYKTAVSARVMATHEAPRVEVPKPHTFSG 140

Query: 124 NRDAKELENFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTID 183
            RDAKEL+NF++ +E+YF+      +  KV  A++Y  D+A LWWR +  DI+ G CTID
Sbjct: 141 KRDAKELDNFLWHMERYFEAIALMDEATKVRTATLYFTDNATLWWRRRFADIERGTCTID 200

Query: 184 SWEDLKKELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKD---- 243
           +W+  K+E++ QF PE+  +IA + +  LKHTG+IR+YV++FSTLML+I   AE++    
Sbjct: 201 TWDAFKREIKRQFYPEDVAYIARKSLKRLKHTGSIREYVKEFSTLMLEIPNMAEEELLFN 260

Query: 244 --------KDPKKNDTGPKHWGKT---------YKPPGHRNGSPNRPNGGNDKLNGWTDR 303
                    + +    G +    T         YK     +  P  P+ GN    G   R
Sbjct: 261 FMDNLQSWAEQELRRRGVQDLATTMAVAESLVDYKRGD--SSKPKPPSKGNQAKGGGDKR 320

Query: 304 PPQNN-QVGTSRGP-------YHQRNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQ 363
              +  + G+S+GP         +R   T    C LC GPH     P R +L        
Sbjct: 321 SQGHTPKEGSSKGPSGKDGKGKDKRKEFTPRTNCFLCDGPHWARDYPKRKAL-------- 380

Query: 364 ESNDARVETMLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKST 389
                    M+++KE   + +MG+L+ L+AL+ K  PK    KGLM+V+A +N + +K+ 
Sbjct: 381 -------NAMIEEKEQEGDAKMGSLQLLNALKAKPMPKTPQSKGLMYVEALVNGKVTKA- 425

[Close]
BLAST of CmoCh11G012530 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 112/354 (31.64%), Postives = 184/354 (51.98%), Query Frame = 1 

Query: 63  ELITIIDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELE 122
           +++T+   ++ RM +++ R++   + +    A    A   ++  P P  F G RDAKEL+
Sbjct: 117 KVMTMFASVESRMKALAARMDARDQEIRQELAIYKIAAP-RVEVPKPHTFSGKRDAKELD 176

Query: 123 NFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKE 182
           NF++ +E+YF+      +  KV +A++YL D+A LWWR    DI+ G CTID+W+  K+E
Sbjct: 177 NFLWHMERYFEAIALMDEATKVRIATLYLTDNATLWWRRWFADIERGTCTIDTWDAFKRE 236

Query: 183 LREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKH 242
           ++ QF PE+  ++A + +  LKHTG+IRDYV++FSTLML+I   AE++      D     
Sbjct: 237 IKRQFYPEDVAYLARKSLKRLKHTGSIRDYVKEFSTLMLEIPNMAEEELLFNFIDNLQSW 296

Query: 243 WGKTYKPPG----------------HRNG---SPNRPNGGNDKLNGWTDRPPQ--NNQVG 302
             K  +  G                +R G    P  P+ GN ++ G  D+  Q   ++ G
Sbjct: 297 AEKELRRYGVQDLATAMAVAESLVDYRRGDSSKPKPPSKGN-QVKGRGDKRLQGHTSKEG 356

Query: 303 TSRGP-------YHQRNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQESNDARVET 362
           +S+GP         +R   T    C LC GPH    CP R +L                 
Sbjct: 357 SSKGPSGKDGKGKDKRKEFTPRTNCFLCDGPHWARDCPKRKAL---------------NA 416

Query: 363 MLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
           M+++KE   + ++G+L+ L+ L+ K   K    K LM+V+A +N + +K+ L+D
Sbjct: 417 MIEEKEQEGDAKVGSLQLLNXLKAKSMFKTPQSKRLMYVEALVNGKATKA-LVD 452

[Close]
BLAST of CmoCh11G012530 vs. TrEMBL
Match: A5B1F0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034229 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 102/300 (34.00%), Postives = 160/300 (53.33%), Query Frame = 1 

Query: 103 KLRFPDPRAFKGNRDAKELENFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTK 162
           ++  P P  F G RDAKEL+NF++ +E YF+      +  KV  A++YL D+A LWW  +
Sbjct: 130 RVEVPKPHTFSGKRDAKELDNFLWHMESYFEAIALMDEATKVRTATLYLTDNATLWWHRR 189

Query: 163 VQDIKNGLCTIDSWEDLKKELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLD 222
             DI+ G CTID+W+  ++E++ QF PE+  ++A + +  LKHTG+IR+YV++FSTLML+
Sbjct: 190 FADIEKGTCTIDTWDAFRREIKRQFYPEDVAYLARKSMKRLKHTGSIREYVKEFSTLMLE 249

Query: 223 ISGTAEKDKDPKKNDTGPKHWGKTYKPPGHRNGSPNR------PNGGNDK-LNGWTDRPP 282
           I   AE++      D       +  +  G ++ +  R        GG DK   G T +  
Sbjct: 250 IPNMAEEELLFNFMDNLQSWVEQELRRRGVQDLATARAVAESLAKGGGDKGSRGHTSKE- 309

Query: 283 QNNQVGTSRGPYHQRNHP-------TTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQESN 342
                G+S+GP  +           T    C LC GPH    CP R +L           
Sbjct: 310 -----GSSKGPSGKDGKDKDKWKEFTPRTNCFLCDGPHWARDCPKRKAL----------- 369

Query: 343 DARVETMLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
                 M+++KE   + ++G+L+ L+AL+ K  PK    KGLM+V+A +N + +K+ L+D
Sbjct: 370 ----NAMIEEKEQEGDAKVGSLQLLNALKAKPMPKTTQSKGLMYVEALVNGKATKA-LVD 407

[Close]
BLAST of CmoCh11G012530 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.9e-38
Identity = 111/362 (30.66%), Postives = 179/362 (49.45%), Query Frame = 1 

Query: 63  ELITIIDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKL---------RFPDPRAFK 122
           +++T+   ++ RM +++ R++V  + +    A    A S ++           P    F 
Sbjct: 102 KVMTMFASVESRMEALAARMDVRDQEIRQELAIYKTAVSARVMATHEAPRVEVPKLHTFS 161

Query: 123 GNRDAKELENFIFDVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTI 182
           G RDAKEL+NF++ +E+YF+      +  KV  A++YL D+A LWWR +  DI+ G CTI
Sbjct: 162 GKRDAKELDNFLWHMERYFEAIALTDEATKVRTATLYLTDNATLWWRRRFADIERGTCTI 221

Query: 183 DSWEDLKKELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDP 242
           D+W+  K+E++ QF PE+  ++A + +  LKHTG+IR+YV++FSTLML+I   AE++   
Sbjct: 222 DTWDAFKREIKRQFYPEDVAYLARKNLKRLKHTGSIREYVKEFSTLMLEIPNMAEEELLF 281

Query: 243 KKNDTGPKHWGKTYKPPG----------------HRNG---SPNRPNGGNDKLNGWTDRP 302
              D       +  +  G                +R G    P  P+ GN    G   R 
Sbjct: 282 NFMDNLQSWAEQELRRRGVQDLATAMAVAESLVDYRKGDSSKPKPPSKGNQAKGGGDKRS 341

Query: 303 PQNN-QVGTSRGP-------YHQRNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSIQE 362
             +  + G+S+GP         +R   T    C LC GPH    CP R +L         
Sbjct: 342 QGHTPKEGSSKGPSGKDGKGKDKRKEFTPRTNCFLCDGPHXARDCPKRKAL--------- 401

Query: 363 SNDARVETMLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTL 389
                   M+++K    + +MG+L  L AL+ K  PK    K LM+V+  +N + +K+ L
Sbjct: 402 ------NAMIEEKXQEGDAKMGSLXLLXALKAKXMPKTPQSKXLMYVETLVNGKATKA-L 447

[Close]
BLAST of CmoCh11G012530 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 233.8 bits (595), Expect = 5.1e-58
Identity = 141/357 (39.50%), Postives = 201/357 (56.30%), Query Frame = 1 

Query: 68  IDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENFIFD 127
           ++ ++  M  ++T++ +T +AVE   A        +++ P+PRA+ G RDAKELENF+FD
Sbjct: 281 VEALKIEMGQINTKLAITMRAVENRPAVPVGGDYGRMKVPEPRAYGGARDAKELENFLFD 340

Query: 128 VEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKELREQF 187
           +EQYF+     ++  KVT+A+MYL +DAKLWWR+K +DIKN  C ID+W+ L+KEL+ QF
Sbjct: 341 MEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQF 400

Query: 188 LPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGKT- 247
           LPEN  +IA   +  L+ TGN+RDYV+ FS LMLDI   +EKDK     + G K W +T 
Sbjct: 401 LPENVDYIARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLE-GLKPWARTE 460

Query: 248 -----------------------YKPPGHRNGSPNRPNGGNDK---------LNGWTDRP 307
                                   + P +R   P+  N  + +           G   R 
Sbjct: 461 LQRQRVQDLASALGAAERLMDYSTESPINRRPQPSPSNANSSRPFRPANLPRPGGSDSRK 520

Query: 308 PQNNQVGTSRGPYHQRNHPTTPLQCMLCKGPHKVSYCPHRASLIVLQVSI--QESNDARV 367
           P N +    R P      P  PL C LC GPH+V  CPH+ +L  LQ SI  QE    R 
Sbjct: 521 PPNTREPPPRNPNAFGFRP-RPLTCFLCNGPHRVGECPHKTALSALQASIRSQEHEGGRE 580

Query: 368 ETMLDKKEDHDNPRMGALKFLSALQ-RKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
           E +   +E  D  ++GAL+FL+AL  + V+ ++  EKGLMFVDA IN + +KS ++D
Sbjct: 581 EVV---EEGEDGAQVGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVD 632

[Close]
BLAST of CmoCh11G012530 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 142/353 (40.23%), Postives = 199/353 (56.37%), Query Frame = 1 

Query: 75  MTSMSTRIEVTRKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENFIFDVEQYFKT 134
           M  ++T++ +T +AVE   A        +++ P+PRA+ G RDAKELENF+FD+EQYF+ 
Sbjct: 1   MGQINTKLAITMRAVENRPAVPMGGDYGRMKVPEPRAYGGARDAKELENFLFDMEQYFRA 60

Query: 135 TTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKELREQFLPENAGH 194
               ++  KVT+A+MYL +DAKLWWR+K +DIKN  C ID+W+ L+KEL+ QFLPEN  +
Sbjct: 61  IKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQFLPENVDY 120

Query: 195 IAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGKT-------- 254
           IA   +  L+ TGN+RDYV+ FS LMLDI   +EKDK     + G K W +T        
Sbjct: 121 IARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLE-GLKPWARTELQRQRVQ 180

Query: 255 ----------------YKPPGHRNGSPNRPNGGNDKLNGWTDRPPQNNQVGTS--RGPYH 314
                            + P +R   P+  N  + +      RP    + G S  R P +
Sbjct: 181 DLASALGAAERLMDYSTESPINRRPQPSPSNANSSR----PFRPANLPRPGGSDNRKPPN 240

Query: 315 QRNHP----------TTPLQCMLCKGPHKVSYCPHRASLIVLQVSI--QESNDARVETML 374
            R  P            PL C LC GPH+V  CPH+ +L  LQ SI  QE    R E + 
Sbjct: 241 TREPPPRNPNAFGFRPRPLTCFLCNGPHRVGECPHKTALSALQASIRSQEHEGGREEVV- 300

Query: 375 DKKEDHDNPRMGALKFLSALQ-RKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
             +E  D  ++GAL+FL+AL  + V+ ++  EKGLMFVDA IN + +KS ++D
Sbjct: 301 --EEGEDGAQVGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVD 345

[Close]
BLAST of CmoCh11G012530 vs. NCBI nr
Match: gi|1009165187|ref|XP_015900908.1| (PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba])

HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54
Identity = 137/360 (38.06%), Postives = 202/360 (56.11%), Query Frame = 1 

Query: 68  IDDIQERMTSMSTRIEVTRKAVEGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENFIFD 127
           ++ ++  M  ++T++ +T +AVE   A        +++ P+PRA+ G RDAKELENF+FD
Sbjct: 99  VEALKIEMGQINTKLAITMRAVENRPAVPVGGDYGRMKVPEPRAYGGARDAKELENFLFD 158

Query: 128 VEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKELREQF 187
           +EQYF+     ++  KVT+A+MYL +DAKLWWR+K +DIKN  C ID+W+ L+KEL+ Q 
Sbjct: 159 MEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQS 218

Query: 188 LPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGKT- 247
           LP+N  +IA   +  L+ TGN+RDYV+ FS LMLDI   +EKDK     + G K W +T 
Sbjct: 219 LPKNVDYIARRHLRELRQTGNVRDYVKAFSALMLDIRDMSEKDKLFYFLE-GLKPWARTE 278

Query: 248 -----------------------YKPPGHRNGSPNRPNGGNDKLNGWTDRPPQNNQVGTS 307
                                   + P +R   P+  N  + +      RP    ++G S
Sbjct: 279 LQRQRVQDLASALGAAERLMDYSTESPINRRPQPSPSNANSSR----PFRPANLPRLGGS 338

Query: 308 --RGPYHQRNHP----------TTPLQCMLCKGPHKVSYCPHRASLIVLQVSI--QESND 367
             R P + R  P            PL C LC GPH+V  CPH+ +L  LQ +I  QE   
Sbjct: 339 DNRKPPNTREPPPWNPNAFGFRPRPLTCFLCNGPHRVGECPHKTALSALQAAIRSQEHEG 398

Query: 368 ARVETMLDKKEDHDNPRMGALKFLSALQ-RKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
            R E +   +E  D  ++GAL+FL+AL  + V+ ++  EKGLM +DA IN + +KS ++D
Sbjct: 399 GREEVV---EEGEDGAQVGALRFLNALNGQVVQARKTNEKGLMLMDAAINGKAAKSVMVD 450

[Close]
BLAST of CmoCh11G012530 vs. NCBI nr
Match: gi|731424323|ref|XP_010662836.1| (PREDICTED: uncharacterized protein LOC104882234 [Vitis vinifera])

HSP 1 Score: 174.5 bits (441), Expect = 3.7e-40
Identity = 118/352 (33.52%), Postives = 181/352 (51.42%), Query Frame = 1 

Query: 68  IDDIQERMTSMSTRIEVTRKAV-EGVTAGQTNAGSNKLRFPDPRAFKGNRDAKELENFIF 127
           IDD +E + S    I + +KAV +G T G      +K+R P+P+ F GNR+AKELENF++
Sbjct: 132 IDDFKETLQSYGEDIAIFKKAVLQGSTLGPE--APSKVRVPEPKGFNGNRNAKELENFLW 191

Query: 128 DVEQYFKTTTACTDNQKVTVASMYLIDDAKLWWRTKVQ-DIKNGLCTIDSWEDLKKELRE 187
           D+EQ+FK      D +KV++ SMYL  DAKLWWRT+V+ D+++G   I +WE LKKEL++
Sbjct: 192 DIEQFFKAAHV-PDGEKVSITSMYLTGDAKLWWRTRVEDDVESGRPQITTWETLKKELKD 251

Query: 188 QFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGK 247
           QFLP N   +A E +  L+HTG++R+YV++FS+LMLDI   +E+DK      +G + W +
Sbjct: 252 QFLPTNTTWVAKEALKRLRHTGSVREYVKEFSSLMLDIKNMSEEDK-LFNFMSGLQEWAQ 311

Query: 248 T----------------------YKPPG--------HRNGSPNRPNGGNDKLNGWTDRPP 307
           T                      YK  G           G     N G  K + W     
Sbjct: 312 TELRRQGVRDLPAAMATTDCLVDYKMGGAISTTQRPRSEGDKKAKNEGKTKKSDWKKHNK 371

Query: 308 QNNQVGTSRGPYHQRNHPTT-PLQCMLCKGPHKVSYCPHRASLIVLQVSIQESNDARVET 367
           +  + G       +    TT  + C +C GPH+   CP R  L  L V++ +  D+  +T
Sbjct: 372 KPAEWGKPVEKTTKVVQQTTRMIGCFICNGPHRAKDCPKREKLSAL-VTVDDKGDSDPDT 431

Query: 368 MLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRPSKSTL 387
                    +PR+  L+ L+ +  +      ++K L+ +   +N    K+ L
Sbjct: 432 ---------SPRVNPLQLLNVIHGETP----VQKSLLHIHVVVNGVQVKALL 465

[Close]
BLAST of CmoCh11G012530 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 174.5 bits (441), Expect = 3.7e-40
Identity = 112/279 (40.14%), Postives = 152/279 (54.48%), Query Frame = 1 

Query: 146 VASMYLIDDAKLWWRTKVQDIKNGLCTIDSWEDLKKELREQFLPENAGHIAMEKIVALKH 205
           +A+MYL +DAKLWWR+K +DIKN  C ID+W+ L+KEL+ QFLPEN  +IA   +  L+ 
Sbjct: 1   MATMYLTNDAKLWWRSKYEDIKNNRCIIDTWDQLQKELKNQFLPENVDYIARRHLRELRQ 60

Query: 206 TGNIRDYVRQFSTLMLDISGTAEKDKDPKKNDTGPKHWGKT------------------- 265
           TGN+RDYV+ FS LMLDI   +EKDK     + G K W +T                   
Sbjct: 61  TGNVRDYVKAFSALMLDIRDMSEKDKLFYFLE-GLKPWARTELQRQRVQDLASALGAAKR 120

Query: 266 -----YKPPGHRNGSPNRPNGGNDK---------LNGWTDRPPQNNQVGTSRGPYHQRNH 325
                 + P +R   P+  N  + +           G  +R P N +      P      
Sbjct: 121 LMDYSTESPINRRPQPSPSNANSSRPFRPANLPRPGGSDNRKPSNTREPPPWNPNAFGFR 180

Query: 326 PTTPLQCMLCKGPHKVSYCPHRASLIVLQVSI--QESNDARVETMLDKKEDHDNPRMGAL 385
           P  PL C LC GPH+V  CPH+ SL  LQ SI  QE    R E +   +E  D  ++GAL
Sbjct: 181 P-RPLTCFLCNGPHRVGECPHKTSLSALQASIRSQEHEGGREEVV---EEGEDGAQVGAL 240

Query: 386 KFLSALQ-RKVEPKEIIEKGLMFVDATINSRPSKSTLID 389
           +FL+AL  + V+ ++  EKGLMFVDATIN + +KS ++D
Sbjct: 241 RFLNALNGQVVQARKTNEKGLMFVDATINGKAAKSVMVD 274

The following BLAST results are available for this feature:
BLAST of CmoCh11G012530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012530 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AYX1_VITVI2.2e-3933.99Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1[more]
A5B1A3_VITVI4.8e-3931.13Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1[more]
A5BDH9_VITVI2.4e-3831.64Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1[more]
A5B1F0_VITVI2.4e-3834.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034229 PE=4 SV=1[more]
A5BX03_VITVI6.9e-3830.66Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1[more]
BLAST of CmoCh11G012530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009175511|ref|XP_015868924.1|5.1e-5839.50PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba][more]
gi|1009181571|ref|XP_015872243.1|1.3e-5640.23PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba][more]
gi|1009165187|ref|XP_015900908.1|1.5e-5438.06PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba][more]
gi|731424323|ref|XP_010662836.1|3.7e-4033.52PREDICTED: uncharacterized protein LOC104882234 [Vitis vinifera][more]
gi|1009161831|ref|XP_015899105.1|3.7e-4040.14PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G012530.1CmoCh11G012530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 146..225
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G012530Cucumber (Chinese Long) v3cmocucB0097
CmoCh11G012530Cucumber (Chinese Long) v3cmocucB0109
CmoCh11G012530Cucumber (Gy14) v1cgycmoB0050
CmoCh11G012530Cucumber (Gy14) v1cgycmoB0051
CmoCh11G012530Cucurbita maxima (Rimu)cmacmoB119
CmoCh11G012530Wild cucumber (PI 183967)cmocpiB086
CmoCh11G012530Wild cucumber (PI 183967)cmocpiB099
CmoCh11G012530Cucumber (Chinese Long) v2cmocuB083
CmoCh11G012530Cucumber (Chinese Long) v2cmocuB096
CmoCh11G012530Melon (DHL92) v3.5.1cmomeB103
CmoCh11G012530Cucurbita pepo (Zucchini)cmocpeB130
CmoCh11G012530Cucumber (Gy14) v2cgybcmoB036
CmoCh11G012530Cucumber (Gy14) v2cgybcmoB049
CmoCh11G012530Melon (DHL92) v3.6.1cmomedB111
CmoCh11G012530Silver-seed gourdcarcmoB0632