CmoCh11G011050.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011050.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding CRS1 / YhbY domain protein, putative
Location	Cmo_Chr11 : 6177033 .. 6177674 (-)
Sequence length	642

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTCTAAACCCTCCGCCGCCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTTAGTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGACGATGACGACGAAAGTGATTACGGAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAATACGGTTGAGGACGGATTGGAAACTGCTGTGGCTTCAGACTCGTCTCCGGCGGTGGTGAGTAGAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCATACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCAGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTCATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTATTTCTTGGCTGA

mRNA sequence

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTCTAAACCCTCCGCCGCCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTTAGTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGACGATGACGACGAAAGTGATTACGGAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAATACGGTTGAGGACGGATTGGAAACTGCTGTGGCTTCAGACTCGTCTCCGGCGGTGGTGAGTAGAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCATACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCAGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTCATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTATTTCTTGGCTGA

Coding sequence (CDS)

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTCTAAACCCTCCGCCGCCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTTAGTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGACGATGACGACGAAAGTGATTACGGAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAATACGGTTGAGGACGGATTGGAAACTGCTGTGGCTTCAGACTCGTCTCCGGCGGTGGTGAGTAGAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCATACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCAGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTCATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTATTTCTTGGCTGA

Homology

[Close]

BLAST of CmoCh11G011050.1 vs. TrEMBL
Match: A0A0A0K2C3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004710 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.4e-56
Identity = 143/205 (69.76%), Postives = 159/205 (77.56%), Query Frame = 1


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAA--ISAACSHQFKPNSSIFLIRQS 60
           MGASI+SS SHS     LLLRS+PSS STF SKPSAA  IS  C HQFKP+SS  L R+S
Sbjct: 1   MGASIISSHSHS-----LLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRES 60

Query: 61  PHRSRSFSPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDDESDYGDEVEIEDFELEDN 120
           PH  R F+PSA +SFSRSFSSTISD S V F++ DD I+D DESDY DEVE+ED      
Sbjct: 61  PHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
            V DG ET VAS+ S  ++SR+EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 EVGDGTETGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKVCSFFQC 203
           PGLATSFIETLEANELLK+     C
Sbjct: 181 PGLATSFIETLEANELLKIKILGNC 194

[Close]

BLAST of CmoCh11G011050.1 vs. TrEMBL
Match: W9SS89_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008439 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 1


Query: 90  EDDDVIDDDDESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTV 149
           ED+D  DDDD+S+  +   IEDF+ E+    +     + +    ++  ++    +PSLTV
Sbjct: 118 EDEDEYDDDDDSEAREVKMIEDFDEEEENGGEKESEKMDNVGLHSLRVKTTGMQLPSLTV 177

Query: 150 KEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKV 197
           KEKKELASYAHSLGKKLKSQLVGKSGVT  +ATSF+ETLE+NELLK+
Sbjct: 178 KEKKELASYAHSLGKKLKSQLVGKSGVTSNVATSFVETLESNELLKI 224

[Close]

BLAST of CmoCh11G011050.1 vs. TrEMBL
Match: I3S7L9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 69/113 (61.06%), Postives = 77/113 (68.14%), Query Frame = 1


Query: 90  EDDDVIDDDDESDYGDEVEIEDFELEDNTVEDGLETAVA----SDSSPAVVSRSE--VKN 149
           E++D +D + E    DE + ED ELE    E G E   A    S SSP V  R E     
Sbjct: 112 EEEDGVDGELEQFDDDETDSEDDELE---TEGGGELEDAQVGGSTSSPLVEKRKERLKLE 171

Query: 150 IPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKV 197
           +PSLTVKEKKELAS+AHSL KKLKSQLVGKSGVT  LATSFIETLEANELLK+
Sbjct: 172 VPSLTVKEKKELASFAHSLWKKLKSQLVGKSGVTSNLATSFIETLEANELLKI 221

[Close]

BLAST of CmoCh11G011050.1 vs. TrEMBL
Match: M0SRT8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 1


Query: 104 GDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLG 163
           G + + ED E +D+  E  LE     D+ P V         P L++KEKKELASYAH LG
Sbjct: 78  GQDSDFEDPEEDDSHEESELENEAGEDTGPVVAVPLPRLPSPKLSIKEKKELASYAHGLG 137

Query: 164 KKLKSQLVGKSGVTPGLATSFIETLEANELLKV 197
           KKLKSQ VGKSGVTP +A +F+ETLEANELLK+
Sbjct: 138 KKLKSQQVGKSGVTPSVAAAFVETLEANELLKL 170

[Close]

BLAST of CmoCh11G011050.1 vs. TrEMBL
Match: A0A0B2S540_GLYSO (Putative RNA-binding protein YqeI OS=Glycine soja GN=glysoja_020568 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 88/197 (44.67%), Postives = 112/197 (56.85%), Query Frame = 1


Query: 3   ASIMSSPSHS-HLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHR 62
           A+++S+ SH   ++ S  L S PS +S  L KP        S  +  ++ +  I+  P R
Sbjct: 2   AAVVSASSHLLFVLRSQPLSSSPSFIS--LLKPLLV-----SSPYAVSTPLRHIQVPPLR 61

Query: 63  SRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVED 122
              FS S+S S       T+S  S    E+ ++ DDDDE     E    DFE        
Sbjct: 62  KPLFSTSSSPSL------TVSQDSEE-LEEKEIADDDDEL----ETPRRDFE-------- 121

Query: 123 GLETAVASDSSPAVVSRSE-VK-NIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPG 182
             +T +    SP    R E VK  +PSL+VKE+KELASYAHSLG KLK+QLVGKSGVTP 
Sbjct: 122 --DTQLGPTCSPLERKRKESVKLEVPSLSVKERKELASYAHSLGDKLKTQLVGKSGVTPN 170

Query: 183 LATSFIETLEANELLKV 197
           LATSFIETLEANELLK+
Sbjct: 182 LATSFIETLEANELLKI 170

[Close]

BLAST of CmoCh11G011050.1 vs. TAIR10
Match: AT4G39040.1 (AT4G39040.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 81/201 (40.30%), Postives = 106/201 (52.74%), Query Frame = 1


Query: 7   SSPSHSHLIHSLLLRSVPSSLSTFLSKP---SAAISAACSHQFKPNSSIFLIRQSPHRS- 66
           +S S +HLIH+LL    P S      +P   SA++S + +H+ KP    F  +  P  S 
Sbjct: 8   ASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQS-NHRNKPRFQSFSSKPLPCHSA 67

Query: 67  ----RSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYG---DEVEIEDFELE 126
               +SFS            S   D SA  +E +D  +++DE D G    E  IED E  
Sbjct: 68  SLVVKSFSSIDEPDLEEDEESEDEDFSAEEYEYEDE-EEEDEQDSGVVVSERGIEDSEAS 127

Query: 127 DNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSG 186
           +   E G +     ++       S +K    L++KEKKELASYAHSLG KLK QLVGKSG
Sbjct: 128 EEVSEIGDKEEKTENTKKKKSRGSALK----LSIKEKKELASYAHSLGDKLKCQLVGKSG 187

Query: 187 VTPGLATSFIETLEANELLKV 197
           VT  +  SF+ETLE NELLKV
Sbjct: 188 VTDSVVFSFLETLEKNELLKV 202

[Close]

BLAST of CmoCh11G011050.1 vs. TAIR10
Match: AT2G21350.1 (AT2G21350.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-11
Identity = 68/191 (35.60%), Postives = 96/191 (50.26%), Query Frame = 1


Query: 8   SPSHSHLIHSLLLRSVPSSLSTFLSKPSAA--ISAACSHQFKPNSSIFLIRQSPHRSRSF 67
           S + ++LIH LL    P+S      +P +   +    SH    +SS+ L    P    SF
Sbjct: 6   SSTLTNLIHHLLRHRKPTSPVCLFLRPFSVSLLGRKSSHHAWISSSLPL----PRPYISF 65

Query: 68  SPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVEDGLET 127
           SP   +   +SFSS               +D+ ++ +    +     E+ D+  EDG E 
Sbjct: 66  SP---LLVPKSFSS---------------VDESEQDEDNVSLVASLNEINDDGQEDGSEL 125

Query: 128 AVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFI 187
            + S      +  +   +   L+ KEK++LASYAH LG KLKSQLVGKSGVT  +  SF+
Sbjct: 126 TMVS------MRENRRSSALELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFV 168

Query: 188 ETLEANELLKV 197
           ETLE NELLKV
Sbjct: 186 ETLEKNELLKV 168

[Close]

BLAST of CmoCh11G011050.1 vs. NCBI nr
Match: gi|659094434|ref|XP_008448058.1| (PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 9.0e-57
Identity = 143/205 (69.76%), Postives = 160/205 (78.05%), Query Frame = 1


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSA--AISAACSHQFKPNSSIFLIRQS 60
           M ASI+SS SHSH  HSLLLRSVPSS STF SKPSA  A S  C HQFKP+SS FL R+S
Sbjct: 1   MRASIISSHSHSHS-HSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60

Query: 61  PHRSRSFSPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDDESDYGDEVEIEDFELEDN 120
           PH SR F+PS S+SFSR FSST+S  S V F++ DD I+D DESDY DEVE+ED      
Sbjct: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
           +V DG E  VAS+ S  V++R+EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 SVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKVCSFFQC 203
           PGLATSFIETLEANELLK+     C
Sbjct: 181 PGLATSFIETLEANELLKIKILGNC 198

[Close]

BLAST of CmoCh11G011050.1 vs. NCBI nr
Match: gi|449461613|ref|XP_004148536.1| (PREDICTED: uncharacterized protein LOC101213060 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 3.4e-56
Identity = 143/205 (69.76%), Postives = 159/205 (77.56%), Query Frame = 1


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAA--ISAACSHQFKPNSSIFLIRQS 60
           MGASI+SS SHS     LLLRS+PSS STF SKPSAA  IS  C HQFKP+SS  L R+S
Sbjct: 1   MGASIISSHSHS-----LLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRES 60

Query: 61  PHRSRSFSPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDDESDYGDEVEIEDFELEDN 120
           PH  R F+PSA +SFSRSFSSTISD S V F++ DD I+D DESDY DEVE+ED      
Sbjct: 61  PHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
            V DG ET VAS+ S  ++SR+EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 EVGDGTETGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKVCSFFQC 203
           PGLATSFIETLEANELLK+     C
Sbjct: 181 PGLATSFIETLEANELLKIKILGNC 194

[Close]

BLAST of CmoCh11G011050.1 vs. NCBI nr
Match: gi|703150066|ref|XP_010109763.1| (hypothetical protein L484_008439 [Morus notabilis])

HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 1


Query: 90  EDDDVIDDDDESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTV 149
           ED+D  DDDD+S+  +   IEDF+ E+    +     + +    ++  ++    +PSLTV
Sbjct: 118 EDEDEYDDDDDSEAREVKMIEDFDEEEENGGEKESEKMDNVGLHSLRVKTTGMQLPSLTV 177

Query: 150 KEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKV 197
           KEKKELASYAHSLGKKLKSQLVGKSGVT  +ATSF+ETLE+NELLK+
Sbjct: 178 KEKKELASYAHSLGKKLKSQLVGKSGVTSNVATSFVETLESNELLKI 224

[Close]

BLAST of CmoCh11G011050.1 vs. NCBI nr
Match: gi|1021487952|ref|XP_016186943.1| (PREDICTED: stress response protein NST1 [Arachis ipaensis])

HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17
Identity = 88/196 (44.90%), Postives = 111/196 (56.63%), Query Frame = 1


Query: 5   IMSSPSHSHLIHSLLLRSVPSSLSTFLSK--PSAAISAACSHQFKPNSSIFLIRQSPHRS 64
           + SS S   L+  LLL S P+ LS   S   P     +   H F           SP  S
Sbjct: 17  LSSSSSFVSLLKPLLLSS-PNVLSMHTSPLLPQNLFPSLTRHHFS----------SPSLS 76

Query: 65  RSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVEDG 124
              +P   V+ + S  ++  +      EDD+    D+ESD  D++E E    E+NT + G
Sbjct: 77  LPHAPPPFVALTSSSQNSEEEDDYYNDEDDETELYDEESDDDDDLESERSSFEENT-QIG 136

Query: 125 LETAVASDSSPAVVSRSE--VKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 184
            E+   S SSP    R E     +PSL+VKE+KELASYAHSLGKKLK+QLVGKSGVTP +
Sbjct: 137 SESN--STSSPLERKREERLKVEVPSLSVKERKELASYAHSLGKKLKTQLVGKSGVTPNV 196

Query: 185 ATSFIETLEANELLKV 197
           ATSFIETLEANELLK+
Sbjct: 197 ATSFIETLEANELLKI 198

[Close]

BLAST of CmoCh11G011050.1 vs. NCBI nr
Match: gi|1012030720|ref|XP_015951963.1| (PREDICTED: stress response protein NST1 isoform X1 [Arachis duranensis])

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 90/197 (45.69%), Postives = 115/197 (58.38%), Query Frame = 1


Query: 4   SIMSSPSHSHLIHSLLLRSVPSSLSTFLSK--PSAAISAACSHQFKPNSSIFLIRQSPHR 63
           S  SS S   L+  LLL S P+ LS   S   P     +   H F  + S++L    PH 
Sbjct: 18  SSSSSSSFVSLLKPLLLSS-PNVLSMHTSPLLPQNLFPSLTRHHFS-SPSLYL----PH- 77

Query: 64  SRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVED 123
               +P   V+ + S  ++  +      EDD+    D+ESD  D++E E    E+NT + 
Sbjct: 78  ----APPPFVALTGSSQNSEEEDDYYNDEDDETELYDEESDDDDDLESERSSFEENT-QI 137

Query: 124 GLETAVASDSSPAVVSRSE--VKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPG 183
           G E+   S SSP    R E     +PSL+VKE+KELASYAHSLGKKLK+QLVGKSGVTP 
Sbjct: 138 GSESN--STSSPLERKREERLKVEVPSLSVKERKELASYAHSLGKKLKTQLVGKSGVTPN 197

Query: 184 LATSFIETLEANELLKV 197
           +ATSFIETLEANELLK+
Sbjct: 198 VATSFIETLEANELLKI 200

The following BLAST results are available for this feature:

BLAST of CmoCh11G011050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G011050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C3_CUCSA	2.4e-56	69.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004710 PE=4 SV=1	[more]
W9SS89_9ROSA	6.3e-17	55.14	Uncharacterized protein OS=Morus notabilis GN=L484_008439 PE=4 SV=1	[more]
I3S7L9_LOTJA	2.4e-16	61.06	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
M0SRT8_MUSAM	1.6e-15	55.91	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0B2S540_GLYSO	2.7e-15	44.67	Putative RNA-binding protein YqeI OS=Glycine soja GN=glysoja_020568 PE=4 SV=1	[more]

BLAST of CmoCh11G011050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39040.1	1.4e-15	40.30	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT2G21350.1	2.7e-11	35.60	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]

BLAST of CmoCh11G011050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094434\|ref\|XP_008448058.1\|	9.0e-57	69.76	PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo]	[more]
gi\|449461613\|ref\|XP_004148536.1\|	3.4e-56	69.76	PREDICTED: uncharacterized protein LOC101213060 [Cucumis sativus]	[more]
gi\|703150066\|ref\|XP_010109763.1\|	9.1e-17	55.14	hypothetical protein L484_008439 [Morus notabilis]	[more]
gi\|1021487952\|ref\|XP_016186943.1\|	9.1e-17	44.90	PREDICTED: stress response protein NST1 [Arachis ipaensis]	[more]
gi\|1012030720\|ref\|XP_015951963.1\|	1.2e-16	45.69	PREDICTED: stress response protein NST1 isoform X1 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001890	RNA-binding_CRM

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G011050	CmoCh11G011050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G011050.1	CmoCh11G011050.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G011050.1.CDS.1	CmoCh11G011050.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G011050.1.exon.1	CmoCh11G011050.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	PRODOM	PD010559		coord: 153..202 score: 3.0
IPR001890	RNA-binding, CRM domain	GENE3D	G3DSA:3.30.110.60		coord: 146..196 score: 1.
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 147..196 score: 9.
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 146..199 score: 1.2
None	No IPR available	PANTHER	PTHR31846	FAMILY NOT NAMED	coord: 67..196 score: 2.0
None	No IPR available	PANTHER	PTHR31846:SF14	RNA-BINDING CRS1 / YHBY (CRM) DOMAIN PROTEIN	coord: 67..196 score: 2.0