CmoCh11G011050 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G011050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding CRS1 / YhbY domain protein, putative
Location	Cmo_Chr11 : 6177033 .. 6177674 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTCTAAACCCTCCGCCGCCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTTAGTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGACGATGACGACGAAAGTGATTACGGAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAATACGGTTGAGGACGGATTGGAAACTGCTGTGGCTTCAGACTCGTCTCCGGCGGTGGTGAGTAGAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCATACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCAGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTCATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTATTTCTTGGCTGA

mRNA sequence

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTCTAAACCCTCCGCCGCCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTTAGTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGACGATGACGACGAAAGTGATTACGGAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAATACGGTTGAGGACGGATTGGAAACTGCTGTGGCTTCAGACTCGTCTCCGGCGGTGGTGAGTAGAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCATACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCAGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTCATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTATTTCTTGGCTGA

Coding sequence (CDS)

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTCTAAACCCTCCGCCGCCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATTCGCCAATCTCCTCACCGTTCCCGGTCTTTTAGTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGACGATGACGACGAAAGTGATTACGGAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAATACGGTTGAGGACGGATTGGAAACTGCTGTGGCTTCAGACTCGTCTCCGGCGGTGGTGAGTAGAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCATACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCAGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTCATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTATTTCTTGGCTGA

Homology

[Close]

BLAST of CmoCh11G011050 vs. TrEMBL
Match: A0A0A0K2C3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004710 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.4e-56
Identity = 143/205 (69.76%), Postives = 159/205 (77.56%), Query Frame = 1


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAA--ISAACSHQFKPNSSIFLIRQS 60
           MGASI+SS SHS     LLLRS+PSS STF SKPSAA  IS  C HQFKP+SS  L R+S
Sbjct: 1   MGASIISSHSHS-----LLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRES 60

Query: 61  PHRSRSFSPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDDESDYGDEVEIEDFELEDN 120
           PH  R F+PSA +SFSRSFSSTISD S V F++ DD I+D DESDY DEVE+ED      
Sbjct: 61  PHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
            V DG ET VAS+ S  ++SR+EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 EVGDGTETGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKVCSFFQC 203
           PGLATSFIETLEANELLK+     C
Sbjct: 181 PGLATSFIETLEANELLKIKILGNC 194

[Close]

BLAST of CmoCh11G011050 vs. TrEMBL
Match: W9SS89_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008439 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 1


Query: 90  EDDDVIDDDDESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTV 149
           ED+D  DDDD+S+  +   IEDF+ E+    +     + +    ++  ++    +PSLTV
Sbjct: 118 EDEDEYDDDDDSEAREVKMIEDFDEEEENGGEKESEKMDNVGLHSLRVKTTGMQLPSLTV 177

Query: 150 KEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKV 197
           KEKKELASYAHSLGKKLKSQLVGKSGVT  +ATSF+ETLE+NELLK+
Sbjct: 178 KEKKELASYAHSLGKKLKSQLVGKSGVTSNVATSFVETLESNELLKI 224

[Close]

BLAST of CmoCh11G011050 vs. TrEMBL
Match: I3S7L9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 69/113 (61.06%), Postives = 77/113 (68.14%), Query Frame = 1


Query: 90  EDDDVIDDDDESDYGDEVEIEDFELEDNTVEDGLETAVA----SDSSPAVVSRSE--VKN 149
           E++D +D + E    DE + ED ELE    E G E   A    S SSP V  R E     
Sbjct: 112 EEEDGVDGELEQFDDDETDSEDDELE---TEGGGELEDAQVGGSTSSPLVEKRKERLKLE 171

Query: 150 IPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKV 197
           +PSLTVKEKKELAS+AHSL KKLKSQLVGKSGVT  LATSFIETLEANELLK+
Sbjct: 172 VPSLTVKEKKELASFAHSLWKKLKSQLVGKSGVTSNLATSFIETLEANELLKI 221

[Close]

BLAST of CmoCh11G011050 vs. TrEMBL
Match: M0SRT8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 1


Query: 104 GDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLG 163
           G + + ED E +D+  E  LE     D+ P V         P L++KEKKELASYAH LG
Sbjct: 78  GQDSDFEDPEEDDSHEESELENEAGEDTGPVVAVPLPRLPSPKLSIKEKKELASYAHGLG 137

Query: 164 KKLKSQLVGKSGVTPGLATSFIETLEANELLKV 197
           KKLKSQ VGKSGVTP +A +F+ETLEANELLK+
Sbjct: 138 KKLKSQQVGKSGVTPSVAAAFVETLEANELLKL 170

[Close]

BLAST of CmoCh11G011050 vs. TrEMBL
Match: A0A0B2S540_GLYSO (Putative RNA-binding protein YqeI OS=Glycine soja GN=glysoja_020568 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 88/197 (44.67%), Postives = 112/197 (56.85%), Query Frame = 1


Query: 3   ASIMSSPSHS-HLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPHR 62
           A+++S+ SH   ++ S  L S PS +S  L KP        S  +  ++ +  I+  P R
Sbjct: 2   AAVVSASSHLLFVLRSQPLSSSPSFIS--LLKPLLV-----SSPYAVSTPLRHIQVPPLR 61

Query: 63  SRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVED 122
              FS S+S S       T+S  S    E+ ++ DDDDE     E    DFE        
Sbjct: 62  KPLFSTSSSPSL------TVSQDSEE-LEEKEIADDDDEL----ETPRRDFE-------- 121

Query: 123 GLETAVASDSSPAVVSRSE-VK-NIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPG 182
             +T +    SP    R E VK  +PSL+VKE+KELASYAHSLG KLK+QLVGKSGVTP 
Sbjct: 122 --DTQLGPTCSPLERKRKESVKLEVPSLSVKERKELASYAHSLGDKLKTQLVGKSGVTPN 170

Query: 183 LATSFIETLEANELLKV 197
           LATSFIETLEANELLK+
Sbjct: 182 LATSFIETLEANELLKI 170

[Close]

BLAST of CmoCh11G011050 vs. TAIR10
Match: AT4G39040.1 (AT4G39040.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 81/201 (40.30%), Postives = 106/201 (52.74%), Query Frame = 1


Query: 7   SSPSHSHLIHSLLLRSVPSSLSTFLSKP---SAAISAACSHQFKPNSSIFLIRQSPHRS- 66
           +S S +HLIH+LL    P S      +P   SA++S + +H+ KP    F  +  P  S 
Sbjct: 8   ASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQS-NHRNKPRFQSFSSKPLPCHSA 67

Query: 67  ----RSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYG---DEVEIEDFELE 126
               +SFS            S   D SA  +E +D  +++DE D G    E  IED E  
Sbjct: 68  SLVVKSFSSIDEPDLEEDEESEDEDFSAEEYEYEDE-EEEDEQDSGVVVSERGIEDSEAS 127

Query: 127 DNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSG 186
           +   E G +     ++       S +K    L++KEKKELASYAHSLG KLK QLVGKSG
Sbjct: 128 EEVSEIGDKEEKTENTKKKKSRGSALK----LSIKEKKELASYAHSLGDKLKCQLVGKSG 187

Query: 187 VTPGLATSFIETLEANELLKV 197
           VT  +  SF+ETLE NELLKV
Sbjct: 188 VTDSVVFSFLETLEKNELLKV 202

[Close]

BLAST of CmoCh11G011050 vs. TAIR10
Match: AT2G21350.1 (AT2G21350.1 RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-11
Identity = 68/191 (35.60%), Postives = 96/191 (50.26%), Query Frame = 1


Query: 8   SPSHSHLIHSLLLRSVPSSLSTFLSKPSAA--ISAACSHQFKPNSSIFLIRQSPHRSRSF 67
           S + ++LIH LL    P+S      +P +   +    SH    +SS+ L    P    SF
Sbjct: 6   SSTLTNLIHHLLRHRKPTSPVCLFLRPFSVSLLGRKSSHHAWISSSLPL----PRPYISF 65

Query: 68  SPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVEDGLET 127
           SP   +   +SFSS               +D+ ++ +    +     E+ D+  EDG E 
Sbjct: 66  SP---LLVPKSFSS---------------VDESEQDEDNVSLVASLNEINDDGQEDGSEL 125

Query: 128 AVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFI 187
            + S      +  +   +   L+ KEK++LASYAH LG KLKSQLVGKSGVT  +  SF+
Sbjct: 126 TMVS------MRENRRSSALELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFV 168

Query: 188 ETLEANELLKV 197
           ETLE NELLKV
Sbjct: 186 ETLEKNELLKV 168

[Close]

BLAST of CmoCh11G011050 vs. NCBI nr
Match: gi|659094434|ref|XP_008448058.1| (PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 9.0e-57
Identity = 143/205 (69.76%), Postives = 160/205 (78.05%), Query Frame = 1


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSA--AISAACSHQFKPNSSIFLIRQS 60
           M ASI+SS SHSH  HSLLLRSVPSS STF SKPSA  A S  C HQFKP+SS FL R+S
Sbjct: 1   MRASIISSHSHSHS-HSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60

Query: 61  PHRSRSFSPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDDESDYGDEVEIEDFELEDN 120
           PH SR F+PS S+SFSR FSST+S  S V F++ DD I+D DESDY DEVE+ED      
Sbjct: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
           +V DG E  VAS+ S  V++R+EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 SVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKVCSFFQC 203
           PGLATSFIETLEANELLK+     C
Sbjct: 181 PGLATSFIETLEANELLKIKILGNC 198

[Close]

BLAST of CmoCh11G011050 vs. NCBI nr
Match: gi|449461613|ref|XP_004148536.1| (PREDICTED: uncharacterized protein LOC101213060 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 3.4e-56
Identity = 143/205 (69.76%), Postives = 159/205 (77.56%), Query Frame = 1


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAA--ISAACSHQFKPNSSIFLIRQS 60
           MGASI+SS SHS     LLLRS+PSS STF SKPSAA  IS  C HQFKP+SS  L R+S
Sbjct: 1   MGASIISSHSHS-----LLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRES 60

Query: 61  PHRSRSFSPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDDESDYGDEVEIEDFELEDN 120
           PH  R F+PSA +SFSRSFSSTISD S V F++ DD I+D DESDY DEVE+ED      
Sbjct: 61  PHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
            V DG ET VAS+ S  ++SR+EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 EVGDGTETGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKVCSFFQC 203
           PGLATSFIETLEANELLK+     C
Sbjct: 181 PGLATSFIETLEANELLKIKILGNC 194

[Close]

BLAST of CmoCh11G011050 vs. NCBI nr
Match: gi|703150066|ref|XP_010109763.1| (hypothetical protein L484_008439 [Morus notabilis])

HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 1


Query: 90  EDDDVIDDDDESDYGDEVEIEDFELEDNTVEDGLETAVASDSSPAVVSRSEVKNIPSLTV 149
           ED+D  DDDD+S+  +   IEDF+ E+    +     + +    ++  ++    +PSLTV
Sbjct: 118 EDEDEYDDDDDSEAREVKMIEDFDEEEENGGEKESEKMDNVGLHSLRVKTTGMQLPSLTV 177

Query: 150 KEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKV 197
           KEKKELASYAHSLGKKLKSQLVGKSGVT  +ATSF+ETLE+NELLK+
Sbjct: 178 KEKKELASYAHSLGKKLKSQLVGKSGVTSNVATSFVETLESNELLKI 224

[Close]

BLAST of CmoCh11G011050 vs. NCBI nr
Match: gi|1021487952|ref|XP_016186943.1| (PREDICTED: stress response protein NST1 [Arachis ipaensis])

HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17
Identity = 88/196 (44.90%), Postives = 111/196 (56.63%), Query Frame = 1


Query: 5   IMSSPSHSHLIHSLLLRSVPSSLSTFLSK--PSAAISAACSHQFKPNSSIFLIRQSPHRS 64
           + SS S   L+  LLL S P+ LS   S   P     +   H F           SP  S
Sbjct: 17  LSSSSSFVSLLKPLLLSS-PNVLSMHTSPLLPQNLFPSLTRHHFS----------SPSLS 76

Query: 65  RSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVEDG 124
              +P   V+ + S  ++  +      EDD+    D+ESD  D++E E    E+NT + G
Sbjct: 77  LPHAPPPFVALTSSSQNSEEEDDYYNDEDDETELYDEESDDDDDLESERSSFEENT-QIG 136

Query: 125 LETAVASDSSPAVVSRSE--VKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 184
            E+   S SSP    R E     +PSL+VKE+KELASYAHSLGKKLK+QLVGKSGVTP +
Sbjct: 137 SESN--STSSPLERKREERLKVEVPSLSVKERKELASYAHSLGKKLKTQLVGKSGVTPNV 196

Query: 185 ATSFIETLEANELLKV 197
           ATSFIETLEANELLK+
Sbjct: 197 ATSFIETLEANELLKI 198

[Close]

BLAST of CmoCh11G011050 vs. NCBI nr
Match: gi|1012030720|ref|XP_015951963.1| (PREDICTED: stress response protein NST1 isoform X1 [Arachis duranensis])

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 90/197 (45.69%), Postives = 115/197 (58.38%), Query Frame = 1


Query: 4   SIMSSPSHSHLIHSLLLRSVPSSLSTFLSK--PSAAISAACSHQFKPNSSIFLIRQSPHR 63
           S  SS S   L+  LLL S P+ LS   S   P     +   H F  + S++L    PH 
Sbjct: 18  SSSSSSSFVSLLKPLLLSS-PNVLSMHTSPLLPQNLFPSLTRHHFS-SPSLYL----PH- 77

Query: 64  SRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVED 123
               +P   V+ + S  ++  +      EDD+    D+ESD  D++E E    E+NT + 
Sbjct: 78  ----APPPFVALTGSSQNSEEEDDYYNDEDDETELYDEESDDDDDLESERSSFEENT-QI 137

Query: 124 GLETAVASDSSPAVVSRSE--VKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPG 183
           G E+   S SSP    R E     +PSL+VKE+KELASYAHSLGKKLK+QLVGKSGVTP 
Sbjct: 138 GSESN--STSSPLERKREERLKVEVPSLSVKERKELASYAHSLGKKLKTQLVGKSGVTPN 197

Query: 184 LATSFIETLEANELLKV 197
           +ATSFIETLEANELLK+
Sbjct: 198 VATSFIETLEANELLKI 200

The following BLAST results are available for this feature:

BLAST of CmoCh11G011050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G011050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C3_CUCSA	2.4e-56	69.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004710 PE=4 SV=1	[more]
W9SS89_9ROSA	6.3e-17	55.14	Uncharacterized protein OS=Morus notabilis GN=L484_008439 PE=4 SV=1	[more]
I3S7L9_LOTJA	2.4e-16	61.06	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
M0SRT8_MUSAM	1.6e-15	55.91	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0B2S540_GLYSO	2.7e-15	44.67	Putative RNA-binding protein YqeI OS=Glycine soja GN=glysoja_020568 PE=4 SV=1	[more]

BLAST of CmoCh11G011050 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39040.1	1.4e-15	40.30	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT2G21350.1	2.7e-11	35.60	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]

BLAST of CmoCh11G011050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094434\|ref\|XP_008448058.1\|	9.0e-57	69.76	PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo]	[more]
gi\|449461613\|ref\|XP_004148536.1\|	3.4e-56	69.76	PREDICTED: uncharacterized protein LOC101213060 [Cucumis sativus]	[more]
gi\|703150066\|ref\|XP_010109763.1\|	9.1e-17	55.14	hypothetical protein L484_008439 [Morus notabilis]	[more]
gi\|1021487952\|ref\|XP_016186943.1\|	9.1e-17	44.90	PREDICTED: stress response protein NST1 [Arachis ipaensis]	[more]
gi\|1012030720\|ref\|XP_015951963.1\|	1.2e-16	45.69	PREDICTED: stress response protein NST1 isoform X1 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001890	RNA-binding_CRM

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G011050.1	CmoCh11G011050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	PRODOM	PD010559		coord: 153..202 score: 3.0
IPR001890	RNA-binding, CRM domain	GENE3D	G3DSA:3.30.110.60		coord: 146..196 score: 1.
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 147..196 score: 9.
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 146..199 score: 1.2
None	No IPR available	PANTHER	PTHR31846	FAMILY NOT NAMED	coord: 67..196 score: 2.0
None	No IPR available	PANTHER	PTHR31846:SF14	RNA-BINDING CRS1 / YHBY (CRM) DOMAIN PROTEIN	coord: 67..196 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G011050	Silver-seed gourd	carcmoB0245
CmoCh11G011050	Silver-seed gourd	carcmoB0431
CmoCh11G011050	Cucumber (Chinese Long) v3	cmocucB0124
CmoCh11G011050	Cucumber (Chinese Long) v3	cmocucB0161
CmoCh11G011050	Watermelon (97103) v2	cmowmbB089
CmoCh11G011050	Watermelon (97103) v2	cmowmbB129
CmoCh11G011050	Wax gourd	cmowgoB0121
CmoCh11G011050	Wax gourd	cmowgoB0122
CmoCh11G011050	Wax gourd	cmowgoB0125
CmoCh11G011050	Cucurbita moschata (Rifu)	cmocmoB082
CmoCh11G011050	Cucurbita moschata (Rifu)	cmocmoB111
CmoCh11G011050	Cucurbita moschata (Rifu)	cmocmoB120
CmoCh11G011050	Cucumber (Gy14) v1	cgycmoB1036
CmoCh11G011050	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G011050	Cucurbita maxima (Rimu)	cmacmoB495
CmoCh11G011050	Wild cucumber (PI 183967)	cmocpiB138
CmoCh11G011050	Cucumber (Chinese Long) v2	cmocuB139
CmoCh11G011050	Melon (DHL92) v3.5.1	cmomeB086
CmoCh11G011050	Melon (DHL92) v3.5.1	cmomeB115
CmoCh11G011050	Watermelon (Charleston Gray)	cmowcgB089
CmoCh11G011050	Watermelon (Charleston Gray)	cmowcgB124
CmoCh11G011050	Watermelon (97103) v1	cmowmB082
CmoCh11G011050	Watermelon (97103) v1	cmowmB111
CmoCh11G011050	Cucurbita pepo (Zucchini)	cmocpeB096
CmoCh11G011050	Cucurbita pepo (Zucchini)	cmocpeB127
CmoCh11G011050	Cucurbita pepo (Zucchini)	cmocpeB139
CmoCh11G011050	Bottle gourd (USVL1VR-Ls)	cmolsiB082
CmoCh11G011050	Bottle gourd (USVL1VR-Ls)	cmolsiB090
CmoCh11G011050	Bottle gourd (USVL1VR-Ls)	cmolsiB141
CmoCh11G011050	Cucumber (Gy14) v2	cgybcmoB159
CmoCh11G011050	Cucumber (Gy14) v2	cgybcmoB882
CmoCh11G011050	Melon (DHL92) v3.6.1	cmomedB092
CmoCh11G011050	Melon (DHL92) v3.6.1	cmomedB124