CmoCh11G007880.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G007880.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 3899191 .. 3899370 (+)
Sequence length	180

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA

mRNA sequence

ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA

Coding sequence (CDS)

ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA

Homology

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BLAST of CmoCh11G007880.1 vs. TrEMBL
Match: A0A0A0LWU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-07
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 2  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF 59
          AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Sbjct: 4  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF 63

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BLAST of CmoCh11G007880.1 vs. NCBI nr
Match: gi|778663322|ref|XP_011660059.1| (PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 2  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF 59
          AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Sbjct: 4  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF 63

The following BLAST results are available for this feature:

BLAST of CmoCh11G007880.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G007880.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWU9_CUCSA	3.7e-07	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1	[more]

BLAST of CmoCh11G007880.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G007880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663322\|ref\|XP_011660059.1\|	5.3e-07	66.67	PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G007880	CmoCh11G007880	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G007880.1	CmoCh11G007880.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G007880.1.exon.1	CmoCh11G007880.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G007880.1.CDS.1	CmoCh11G007880.1.CDS.1	CDS