CmoCh10G012700.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G012700.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Gag-pol polyprotein
Location	Cmo_Chr10 : 13088354 .. 13092458 (+)
Sequence length	1539

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCTCACACATTCTTTATCAGCCGTGATGTCAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCTTATTGTACCACTTCATGATCCATCCTACTCAAACATCCATCCTCCACCTTCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATCCCTTCACCTACTACTCCGTCGTCTCCTCCACCTTCTCCAGATTCGCCCACTAATTCCAATCCTATCCCACCTGATACATCAGCTCCACTTCGACGTTCTACTCGTACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGTCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAGACAGAACCTAAAACCTATGACGAGGCAGTTGGCGACCCGTTATGGCAGCAGGCTATGAATGATGAAATTGCAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACTTGGTCATAAAGCTATTGGTTGTCGTTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTTATAAAGCTCGACTAGTAGCAAAGGGGTACACTCAGGTTGAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCGAAACTTACTACACTTCGTTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATGCAGGCTACACTCAGTTCAAAGCAGATTACTCTTTAGAGTTAACTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAATTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTCTTACTAAAGCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGGTGTGATCGACATACACTCTCCAACTTGAGGGGGAGTATTAAGAGGATATTTTGCCGTGATAATTAGTTAGAATATATCTTAGATATTTAGGGAGTTGTTAGTATAGATTTGATTAACCGTATATTTTATTTATTTACCAGATTTAATTAGATATATATTTTTTCTATTTTTAGGTATTAGTTGATAGTTTGTATCCTATTTAAACGTGGTAAACCTGAATGAAGATCATACTTCCGATCCCAATTCTATTTCTATTTCTCATTCTTAACAGACCTCTAAACAGAAAAATAATTGGAGCAATAAACAGAAAAATAATTGGAGCAAGATGGGTGTTCAGAAAAAAGCTTGGAGTTCACAGCATCTAAACAAGGAGGAGTGTTAAAGATCGCATATTTGTTTAGATTGCTGTCAGTTAGTATCTAATTAAATCTCCGTTAGAAGTTATATCTAGTTTTTTATTTAATTTAGTTTTTGATTTGATTAGATTTTATTTTGATTTGTTTACTGGTTTGTTACCAGATTTTCTACCGATTTTTAGGTAGATTTTTTTAGATATCTCTTTCTATTCTCTGTGCATATATAGAGCATTCTTGCTCTTCAAAATTTAATTATCTCATCTACCATTCAATAAATCCCTCTTTCACTAACAAGCCTGAAGCCCTGATACCAAATGATAAGATAAGGAATCAATACAAGGGGAATAAGATTCGGATTACCTTGTTGATCGAATATCTCAAGGTAAGAACACTTGATTGAGATTCAAATCACTCCAGAAGCAAGTTCGATCATGTCTAGCTTCAATGATTCTTGTTGATCAAATATCTCAAGACAAGAACACTTGATTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAATCTAAACTACATAGAATTGCAAAGAAACTTAGCCATTGACTAAAGAAAAGCACAAATGCTTCTTTTAATATATTTTCCAAGTCTGATTACAAATAAACATACAAGGCTTTATATAGCCTCAAAAAAATGAAACTATTAAAGCATTACAAAAGTTGTAACATTCACACTTTATGGCCATAATTAGCCATTATGTAAATGTAACCGAAATTAAATAAAAAGTCTTAAAATAGAATAACTCTAAATTACTCTAAATTATAACCCACCCAAAATTTACAACGATCAAACTTTATTCTTATTCAATGTAGCATGAATTGAAACATCTTTTGATAATTTTGACAACCTTTTCTTCACATCTTCATTGAAGTATATTGTAGGATTGATGTCTTTTGTTCATATCAGATTTGATAAGAGATATATTGGGTAGATATTTGATAAAGATTTGATAGAGATATATTTGGTAGATTATATCTCGTAGGTTTAAATCGGAAGCTATATCTAATAAATTGAAACCATATATATCCCATTAGGCAACTCTCAAAATGTACTTCTCTTCATTCTTTGTATTCTATTTTGTTGTACATACCTGAAGTCATCAATACAAAACCTTCAGCCAATATTCCTCCTTGTATTTTCTCTCTCCTGTTCTTTGTGTTCGTCTTGATCGAGTGTGTGCGTTGTTGAGCGATCCTAACAATTGGTATCAGAGCTAACAACTAGTATCGATCCTAACACTAGTAGTAATTATGCATGAGATGTAGATGATAGGAAAAGCACTTCTGGTTATGTGTTTTTACTCAGTGAATGAGCTGTCTTGGTCCTCTAAAAAACAACTTATAGTTACCAATTGTGTCTTGATCCTCCAAAAAATAACTTGCAGTTACTTTGTCTACTACTGAAGTAGAGTTTGTGGTCGGGAAGAGTATTGGAAAGGGGTGTGGACAAGGAGAGCATTGGAAAAACTTGGTCATTTTTAGAGTTGGCTAGTTTGTAAGCCTCTAAAAGCCAACCAAGTTGATTTGTATAACAATGTAATTGATTTCCGAGCTTTAGTTTGTGTGTTTACAACAAATTATATTAAAATAATAACATTTAATTATGAAGTATTGAGTTGAAGTTGAAGCACTATGTCACAAAAGAATTAATACCACTTAAACTAAATGCATAAAGCTGCAAGTAAATTGAAAGCATTTGTAATCAATTTTATGGAAAGATGGTTTGATTAGATCATTTCTTTAGGCGTGAAATTATATTAAAATAATGACATTTTAATTATGAAGTATGAAGTATGTTTCAAAGGATAAATAAAATATTTTTAGTATGTTTGTCCATCCAATTTTCTTCTAATAATTTTATAGAATAAACATCTCACTGTTCATAAATAAATAAAAAATAAAACTTTTGGAGTATTTATCCAAAATAAATACCCTCCCAACATGGTGGAAGAATAAGATGTACATATTATAACAAGCAGACAGGAAGAATAACATAACTAACTACCTTGAATGAAACATCATAACATCTAAATGGAACATTTAGGTTCAACTGTATTGAAATTCTTTGAATTCAATAATAAAGATGTGGTTTTTAATTTAGCTTCTAAGCTGCTTTTCCAAATGGAGGAACTGTTTAATCTTCTTGTGTGTTGAAACAAGGTTTCAGAAGGAGTGCAGATCAGATTTGTGATCTCACCACCTTCTTCTTTCTTGTTTATTGACTTCCCAATCAAATTGCAGTATGTGTTCAGGTTCCATGACGACAGAAAGAGAGAAATAAATGAAGAATCCAGCCGTTGA

mRNA sequence

ATGCAATCTCACACATTCTTTATCAGCCGTGATGTCAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCTTATTGTACCACTTCATGATCCATCCTACTCAAACATCCATCCTCCACCTTCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATCCCTTCACCTACTACTCCGTCGTCTCCTCCACCTTCTCCAGATTCGCCCACTAATTCCAATCCTATCCCACCTGATACATCAGCTCCACTTCGACGTTCTACTCGTACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGTCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAGACAGAACCTAAAACCTATGACGAGGCAGTTGGCGACCCGTTATGGCAGCAGGCTATGAATGATGAAATTGCAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACTTGGTCATAAAGCTATTGGTTGTCGTTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTTATAAAGCTCGACTAGTAGCAAAGGGGTACACTCAGGTTGAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCGAAACTTACTACACTTCGTTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATGCAGGCTACACTCAGTTCAAAGCAGATTACTCTTTAGAGTTAACTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAATTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTCTTACTAAAGCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGAAGGAGTGCAGATCAGATTTGTGATCTCACCACCTTCTTCTTTCTTGTTTATTGACTTCCCAATCAAATTGCAGTATGTGTTCAGGTTCCATGACGACAGAAAGAGAGAAATAAATGAAGAATCCAGCCGTTGA

Coding sequence (CDS)

ATGCAATCTCACACATTCTTTATCAGCCGTGATGTCAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCTTATTGTACCACTTCATGATCCATCCTACTCAAACATCCATCCTCCACCTTCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATCCCTTCACCTACTACTCCGTCGTCTCCTCCACCTTCTCCAGATTCGCCCACTAATTCCAATCCTATCCCACCTGATACATCAGCTCCACTTCGACGTTCTACTCGTACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGTCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAGACAGAACCTAAAACCTATGACGAGGCAGTTGGCGACCCGTTATGGCAGCAGGCTATGAATGATGAAATTGCAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACTTGGTCATAAAGCTATTGGTTGTCGTTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTTATAAAGCTCGACTAGTAGCAAAGGGGTACACTCAGGTTGAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCGAAACTTACTACACTTCGTTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATGCAGGCTACACTCAGTTCAAAGCAGATTACTCTTTAGAGTTAACTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAATTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTCTTACTAAAGCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGAAGGAGTGCAGATCAGATTTGTGATCTCACCACCTTCTTCTTTCTTGTTTATTGACTTCCCAATCAAATTGCAGTATGTGTTCAGGTTCCATGACGACAGAAAGAGAGAAATAAATGAAGAATCCAGCCGTTGA

Homology

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BLAST of CmoCh10G012700.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-39
Identity = 81/186 (43.55%), Postives = 123/186 (66.13%), Query Frame = 1


Query: 163 LITSQTEPKTYDEAVGDPLWQQ---AMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKI 222
           LI+   EP++  E +  P   Q   AM +E+ +L++N T+ LV LP G + + C+WV+K+
Sbjct: 804 LISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKL 863

Query: 223 KYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDV 282
           K + D  + RYKARLV KG+ Q +GID+ E FSP  K+T++R +L++AA+      QLDV
Sbjct: 864 KKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDV 923

Query: 283 QNAFLHGNLDEEVYMSLPPGLRRQG-ENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGY 342
           + AFLHG+L+EE+YM  P G    G ++ VC+L+KSLYGLKQA R W+  F + +++  Y
Sbjct: 924 KTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTY 983

Query: 343 TQFKAD 345
            +  +D
Sbjct: 984 LKTYSD 989

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BLAST of CmoCh10G012700.1 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 154.8 bits (390), Expect = 2.5e-36
Identity = 71/178 (39.89%), Postives = 111/178 (62.36%), Query Frame = 1


Query: 182  WQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQ 241
            W++A+N E+ A + N+TW++   P     +  RWV+ +KYN  G+  RYKARLVA+G+TQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 242  VEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLR 301
               IDY ETF+P A++++ R +L++        HQ+DV+ AFL+G L EE+YM LP G+ 
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

Query: 302  RQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSLELTWKSKKQTNV 360
               +N VC+L+K++YGLKQA+R WF +F   ++   +     D  + +  K     N+
Sbjct: 1026 CNSDN-VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1082

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BLAST of CmoCh10G012700.1 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-24
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 165 TSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSD 224
           T + EPK+   A+ DP W QAM +E+ AL RN TW LVP P+    +GC+WV+K K +SD
Sbjct: 23  TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82

Query: 225 GSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVA 268
           G+++R KARLVAKG+ Q EGI + ET+SP  +  T+R +L VA
Sbjct: 83  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

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BLAST of CmoCh10G012700.1 vs. Swiss-Prot
Match: YC21B_YEAST (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-10
Identity = 51/175 (29.14%), Postives = 85/175 (48.57%), Query Frame = 1


Query: 173  YDEAVG-------DPLWQQAMNDEIAALERNHTWSLVPLPLGH-----KAIGCRWVYKIK 232
            YDEA+           + +A + EI+ L + +TW        +     K I   +++  K
Sbjct: 1249 YDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKK 1308

Query: 233  YNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQ 292
               DG+   +KAR VA+G  Q      ++  S T     L   L++A    ++  QLD+ 
Sbjct: 1309 --RDGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDIS 1368

Query: 293  NAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQN 336
            +A+L+ ++ EE+Y+  PP L     + + RL KSLYGLKQ+  NW+    + + N
Sbjct: 1369 SAYLYADIKEELYIRPPPHLGL--NDKLLRLRKSLYGLKQSGANWYETIKSYLIN 1416

[Close]

BLAST of CmoCh10G012700.1 vs. Swiss-Prot
Match: YL21B_YEAST (Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR1 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-10
Identity = 51/175 (29.14%), Postives = 85/175 (48.57%), Query Frame = 1


Query: 173  YDEAVG-------DPLWQQAMNDEIAALERNHTWSLVPLPLGH-----KAIGCRWVYKIK 232
            YDEA+           + +A + EI+ L + +TW        +     K I   +++  K
Sbjct: 1249 YDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKK 1308

Query: 233  YNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQ 292
               DG+   +KAR VA+G  Q      ++  S T     L   L++A    ++  QLD+ 
Sbjct: 1309 --RDGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDIS 1368

Query: 293  NAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQN 336
            +A+L+ ++ EE+Y+  PP L     + + RL KSLYGLKQ+  NW+    + + N
Sbjct: 1369 SAYLYADIKEELYIRPPPHLGL--NDKLLRLRKSLYGLKQSGANWYETIKSYLIN 1416

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BLAST of CmoCh10G012700.1 vs. TrEMBL
Match: A5BNR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 2.1e-103
Identity = 221/380 (58.16%), Postives = 268/380 (70.53%), Query Frame = 1


Query: 1    MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIP------ 60
            +Q+    +SRDV F E+ FPF S+S  S     +L +PL   S+ +   P S+P      
Sbjct: 1031 LQTQKISVSRDVFFRENIFPFHSSSSQSQQHSPSLPLPL-PISFDSTPQPISLPRFSPSS 1090

Query: 61   SPPTPPSPPIPSPPTP---------------PSPPIPSPTTPSSPPPSPDSPTNSNPIPP 120
            +PP     P+ SPP+                P P  PSP++ SSPP  P  P+N++   P
Sbjct: 1091 TPPLSHHNPVSSPPSSNTDVPEPLSHESVASPLPSSPSPSSLSSPPSVPLVPSNTSAPSP 1150

Query: 121  DTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRA 180
                PLRRSTR  QPPAWH DY MS+ +NH ++ SS   GTRYPL  +LSF RFSP  RA
Sbjct: 1151 THEPPLRRSTRHIQPPAWHHDYVMSAQLNHSSTQSSSRQGTRYPLSSHLSFFRFSPHHRA 1210

Query: 181  FLALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKI 240
            FLAL+T+QTEP ++++A  DP W+QAM+ E+ ALERN+TW +VPLP GHK IGCRWVYKI
Sbjct: 1211 FLALLTAQTEPSSFEQADCDPRWRQAMSTELQALERNNTWEMVPLPPGHKPIGCRWVYKI 1270

Query: 241  KYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDV 300
            KY+SDG++ERYKARLVAKGYTQV GIDY ETFSPTAKLTTLRCLLTVAA+R W+ HQLDV
Sbjct: 1271 KYHSDGTIERYKARLVAKGYTQVAGIDYQETFSPTAKLTTLRCLLTVAASRNWYIHQLDV 1330

Query: 301  QNAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYT 360
             NAFLHGNL EEVYM+ PPGLRRQGEN VCRL KS+YGLKQASRNWFS F+ T+++AGY 
Sbjct: 1331 HNAFLHGNLQEEVYMTPPPGLRRQGENLVCRLRKSIYGLKQASRNWFSTFTATVKSAGYI 1390

[Close]

BLAST of CmoCh10G012700.1 vs. TrEMBL
Match: A0A151TBK6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_019027 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.3e-89
Identity = 193/397 (48.61%), Postives = 253/397 (63.73%), Query Frame = 1


Query: 72  SPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLT 131
           S  +P+ +  +S P    SP  S P+P      LRRS R   PP + KD+      N LT
Sbjct: 433 SHTMPNQSVTTSRPAH--SPQQSPPLP------LRRSQRIPFPPTYLKDFHY----NFLT 492

Query: 132 SSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDPLWQQAMNDEIA 191
           SS     G  +PL   ++++  S +   ++  +++  EPK Y +AV    W  AM  EI 
Sbjct: 493 SSPELSKGISHPLSSVINYNTLSSSHLHYVLSLSTHEEPKFYHQAVKSQEWVVAMKAEID 552

Query: 192 ALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQVEGIDYTETF 251
           AL  N+TW++V LP G   IGC+WVYKIKY SDGSVERYKARLVAKG+TQ EG+DY ET 
Sbjct: 553 ALTANNTWTIVDLPSGKHPIGCKWVYKIKYRSDGSVERYKARLVAKGFTQTEGLDYFETC 612

Query: 252 SPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLRRQGENTVCRL 311
           +P  KLTT+R LL VA+++ WF HQLDV NAFLHG+L+EEVYM++P G+     N VC+L
Sbjct: 613 APVEKLTTVRLLLAVASSQNWFLHQLDVNNAFLHGDLEEEVYMTIPQGVVWSKPNQVCKL 672

Query: 312 HKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSLELTWKSKKQTNVSRSSAEAEYRAM 371
           HKSLY LKQASR        ++               ++W+SKKQ+ VSRSS+EA+YRA+
Sbjct: 673 HKSLYMLKQASR----FLGNSL---------------ISWRSKKQSTVSRSSSEAKYRAL 732

Query: 372 ANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERTKHIEIDCHIVREK 431
           A+T  E+ WL Y+L +L VP + PALL+CD+ +A HIAA  VFHERTKHI+IDC++VRE 
Sbjct: 733 ASTSCEIQWLTYLLTNLAVPFTAPALLFCDSASARHIAAISVFHERTKHIDIDCYVVREH 792

Query: 432 LQAGIIKPCYVSTKMQLADVLTKALGRQQFDFLKDKL 469
           LQ  ++    +ST  Q AD+ TKAL    F  L  KL
Sbjct: 793 LQNHLLHLLPISTTEQPADLFTKALDPSPFSHLLSKL 798

[Close]

BLAST of CmoCh10G012700.1 vs. TrEMBL
Match: A5B780_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000584 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 9.7e-80
Identity = 181/348 (52.01%), Postives = 225/348 (64.66%), Query Frame = 1


Query: 1   MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTPP 60
           ++++ FF S DV F E  FPF +  Q        +++PL   SY  I    + P     P
Sbjct: 392 LETNKFFSSXDVVFHEHIFPFHTNPQEEQ--HDVVVLPLPQTSYEPITTETTKPQADDQP 451

Query: 61  SPPIPSPPTPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKD 120
                       PP+ S    +S   + D  T  +P PP T    RRS R KQP    ++
Sbjct: 452 ------------PPLLSSLESTSNERTLDLDTIVSPPPPAT----RRSDRIKQPNVXLRN 511

Query: 121 YEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDP 180
           + +       +S SS  +GTR+PL  Y+S+++ SP  R F+  IT+  EP TY++AV DP
Sbjct: 512 FHLYHTAKVXSSQSSSLSGTRHPLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQAVLDP 571

Query: 181 LWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYT 240
            WQ+AM  E+ ALE+NHTW+L PLP GH+ IGC+WVYKIKYNSDG+VERYKARLVAKG+T
Sbjct: 572 KWQEAMAAELHALEQNHTWTLTPLPSGHRPIGCKWVYKIKYNSDGTVERYKARLVAKGFT 631

Query: 241 QVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGL 300
           Q EGIDY ETFSP AKLTT+RCLL +AA R W  HQ+DVQNAFLHG+L EEVYM LPPG 
Sbjct: 632 QREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPPGF 691

Query: 301 RRQGEN-TVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
            RQGE   VCR +KSLYGLKQASR+WF  FS TIQ  G+ Q +ADYSL
Sbjct: 692 XRQGETPMVCRXNKSLYGLKQASRSWFXKFSATIQQDGFXQSRADYSL 721

[Close]

BLAST of CmoCh10G012700.1 vs. TrEMBL
Match: A5BC87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 182/353 (51.56%), Postives = 227/353 (64.31%), Query Frame = 1


Query: 1   MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTPP 60
           ++++ FF SRDV F E  FPF +  Q        +++PL   SY                
Sbjct: 470 LETNKFFSSRDVVFHEHIFPFHTNPQEEQ--HDVVVLPLPQTSYE--------------- 529

Query: 61  SPPIPSPPTPP-----SPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPP 120
             PI +  T P     SPP+ S    +    + D  T  +P PP T    RR  R KQP 
Sbjct: 530 --PITTETTKPQADDQSPPLLSSLESTFNERTLDLDTIVSPPPPAT----RRFDRIKQPN 589

Query: 121 AWHKDYEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDE 180
              +++ +       +S SS  +GTR+PL+ Y+S+++ SP  R F+  IT+  EP TY++
Sbjct: 590 VQFQNFHLYHTAKVASSQSSSLSGTRHPLNRYISYAQLSPKYRNFVCAITTLVEPTTYEQ 649

Query: 181 AVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLV 240
           AV DP WQ+AM  E+ ALE+NHTW+L PLP GH+ IGC+WVYKIKYNSDG+VERYKA+LV
Sbjct: 650 AVLDPKWQEAMAAELHALEQNHTWTLTPLPSGHRPIGCKWVYKIKYNSDGTVERYKAQLV 709

Query: 241 AKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMS 300
           AKG+TQ EGIDY ETFSP AKLTT+RCLL +AA R W  HQ+DVQNAFLHG+L EEVYM 
Sbjct: 710 AKGFTQREGIDYKETFSPMAKLTTIRCLLAIAAVRHWSFHQMDVQNAFLHGDLLEEVYMQ 769

Query: 301 LPPGLRRQGEN-TVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
           LPPG  RQGE   VCRL+KSLYGLKQASR+WF  FS TIQ  G+ Q  ADYSL
Sbjct: 770 LPPGFCRQGETLMVCRLNKSLYGLKQASRSWFQKFSATIQQNGFHQSMADYSL 799

[Close]

BLAST of CmoCh10G012700.1 vs. TrEMBL
Match: A5BCQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.1e-78
Identity = 180/348 (51.72%), Postives = 224/348 (64.37%), Query Frame = 1


Query: 1    MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTPP 60
            + ++ FF S DV F E  FPF +  Q        +++PL   SY  I    + P     P
Sbjct: 800  LXTNKFFSSXDVVFHEHIFPFHTNPQEEQ--HDVVVLPLPQTSYEPITTETTKPQADDQP 859

Query: 61   SPPIPSPPTPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKD 120
                        PP+ S    +S   +    T  +P PP T    RRS R KQP    ++
Sbjct: 860  ------------PPLLSSLESTSNERTLXLDTIVSPPPPTT----RRSDRIKQPNVHLRN 919

Query: 121  YEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDP 180
            + +       +S SS  +GTR+PL  Y+S+++ SP  R F+  IT+  EP TY++AV DP
Sbjct: 920  FHLYHTAKVASSQSSSLSGTRHPLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQAVLDP 979

Query: 181  LWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYT 240
             WQ+AM  E+ ALE+NHTW+L PLP GH+ IGC+WVYKIKYNSDG+VERYKARLVAKG+T
Sbjct: 980  KWQEAMAAELHALEQNHTWTLTPLPYGHRPIGCKWVYKIKYNSDGTVERYKARLVAKGFT 1039

Query: 241  QVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGL 300
            Q EGIDY ETFSP AKLTT+RCLL +AA R W  HQ+DVQNAFLHG+L EEVYM LP G 
Sbjct: 1040 QREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPLGF 1099

Query: 301  RRQGEN-TVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
            R+QGE   VCRL+KSLYGLKQASR+WF  FS TIQ  G+ Q +ADYSL
Sbjct: 1100 RQQGETPMVCRLNKSLYGLKQASRSWFRKFSATIQQDGFHQSRADYSL 1129

[Close]

BLAST of CmoCh10G012700.1 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-58
Identity = 131/279 (46.95%), Postives = 170/279 (60.93%), Query Frame = 1


Query: 79  TTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLTSSSSPGT 138
           +T SS      S    N +P  +     R TR    PA+ +DY   S  +          
Sbjct: 8   STSSSSIDIMPSANIQNDVPEPSVHTSHRRTRK---PAYLQDYYCHSVASL--------- 67

Query: 139 GTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHT 198
            T + +  +LS+ + SP   +FL  I    EP TY+EA    +W  AM+DEI A+E  HT
Sbjct: 68  -TIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHT 127

Query: 199 WSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLT 258
           W +  LP   K IGC+WVYKIKYNSDG++ERYKARLVAKGYTQ EGID+ ETFSP  KLT
Sbjct: 128 WEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLT 187

Query: 259 TLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPG-LRRQGE----NTVCRLHK 318
           +++ +L ++A   +  HQLD+ NAFL+G+LDEE+YM LPPG   RQG+    N VC L K
Sbjct: 188 SVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKK 247

Query: 319 SLYGLKQASRNWFSIFSTTIQNAGYTQFKAD--YSLELT 351
           S+YGLKQASR WF  FS T+   G+ Q  +D  Y L++T
Sbjct: 248 SIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKIT 273

[Close]

BLAST of CmoCh10G012700.1 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-25
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 165 TSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSD 224
           T + EPK+   A+ DP W QAM +E+ AL RN TW LVP P+    +GC+WV+K K +SD
Sbjct: 23  TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82

Query: 225 GSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVA 268
           G+++R KARLVAKG+ Q EGI + ET+SP  +  T+R +L VA
Sbjct: 83  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of CmoCh10G012700.1 vs. NCBI nr
Match: gi|147783627|emb|CAN68148.1| (hypothetical protein VITISV_035665 [Vitis vinifera])

HSP 1 Score: 384.4 bits (986), Expect = 3.1e-103
Identity = 221/380 (58.16%), Postives = 268/380 (70.53%), Query Frame = 1


Query: 1    MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIP------ 60
            +Q+    +SRDV F E+ FPF S+S  S     +L +PL   S+ +   P S+P      
Sbjct: 1031 LQTQKISVSRDVFFRENIFPFHSSSSQSQQHSPSLPLPL-PISFDSTPQPISLPRFSPSS 1090

Query: 61   SPPTPPSPPIPSPPTP---------------PSPPIPSPTTPSSPPPSPDSPTNSNPIPP 120
            +PP     P+ SPP+                P P  PSP++ SSPP  P  P+N++   P
Sbjct: 1091 TPPLSHHNPVSSPPSSNTDVPEPLSHESVASPLPSSPSPSSLSSPPSVPLVPSNTSAPSP 1150

Query: 121  DTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRA 180
                PLRRSTR  QPPAWH DY MS+ +NH ++ SS   GTRYPL  +LSF RFSP  RA
Sbjct: 1151 THEPPLRRSTRHIQPPAWHHDYVMSAQLNHSSTQSSSRQGTRYPLSSHLSFFRFSPHHRA 1210

Query: 181  FLALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKI 240
            FLAL+T+QTEP ++++A  DP W+QAM+ E+ ALERN+TW +VPLP GHK IGCRWVYKI
Sbjct: 1211 FLALLTAQTEPSSFEQADCDPRWRQAMSTELQALERNNTWEMVPLPPGHKPIGCRWVYKI 1270

Query: 241  KYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDV 300
            KY+SDG++ERYKARLVAKGYTQV GIDY ETFSPTAKLTTLRCLLTVAA+R W+ HQLDV
Sbjct: 1271 KYHSDGTIERYKARLVAKGYTQVAGIDYQETFSPTAKLTTLRCLLTVAASRNWYIHQLDV 1330

Query: 301  QNAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYT 360
             NAFLHGNL EEVYM+ PPGLRRQGEN VCRL KS+YGLKQASRNWFS F+ T+++AGY 
Sbjct: 1331 HNAFLHGNLQEEVYMTPPPGLRRQGENLVCRLRKSIYGLKQASRNWFSTFTATVKSAGYI 1390

[Close]

BLAST of CmoCh10G012700.1 vs. NCBI nr
Match: gi|1012353243|gb|KYP64431.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89
Identity = 193/397 (48.61%), Postives = 253/397 (63.73%), Query Frame = 1


Query: 72  SPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLT 131
           S  +P+ +  +S P    SP  S P+P      LRRS R   PP + KD+      N LT
Sbjct: 433 SHTMPNQSVTTSRPAH--SPQQSPPLP------LRRSQRIPFPPTYLKDFHY----NFLT 492

Query: 132 SSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDPLWQQAMNDEIA 191
           SS     G  +PL   ++++  S +   ++  +++  EPK Y +AV    W  AM  EI 
Sbjct: 493 SSPELSKGISHPLSSVINYNTLSSSHLHYVLSLSTHEEPKFYHQAVKSQEWVVAMKAEID 552

Query: 192 ALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQVEGIDYTETF 251
           AL  N+TW++V LP G   IGC+WVYKIKY SDGSVERYKARLVAKG+TQ EG+DY ET 
Sbjct: 553 ALTANNTWTIVDLPSGKHPIGCKWVYKIKYRSDGSVERYKARLVAKGFTQTEGLDYFETC 612

Query: 252 SPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLRRQGENTVCRL 311
           +P  KLTT+R LL VA+++ WF HQLDV NAFLHG+L+EEVYM++P G+     N VC+L
Sbjct: 613 APVEKLTTVRLLLAVASSQNWFLHQLDVNNAFLHGDLEEEVYMTIPQGVVWSKPNQVCKL 672

Query: 312 HKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSLELTWKSKKQTNVSRSSAEAEYRAM 371
           HKSLY LKQASR        ++               ++W+SKKQ+ VSRSS+EA+YRA+
Sbjct: 673 HKSLYMLKQASR----FLGNSL---------------ISWRSKKQSTVSRSSSEAKYRAL 732

Query: 372 ANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERTKHIEIDCHIVREK 431
           A+T  E+ WL Y+L +L VP + PALL+CD+ +A HIAA  VFHERTKHI+IDC++VRE 
Sbjct: 733 ASTSCEIQWLTYLLTNLAVPFTAPALLFCDSASARHIAAISVFHERTKHIDIDCYVVREH 792

Query: 432 LQAGIIKPCYVSTKMQLADVLTKALGRQQFDFLKDKL 469
           LQ  ++    +ST  Q AD+ TKAL    F  L  KL
Sbjct: 793 LQNHLLHLLPISTTEQPADLFTKALDPSPFSHLLSKL 798

[Close]

BLAST of CmoCh10G012700.1 vs. NCBI nr
Match: gi|658026612|ref|XP_008348733.1| (PREDICTED: uncharacterized protein LOC103411898, partial [Malus domestica])

HSP 1 Score: 312.4 bits (799), Expect = 1.5e-81
Identity = 193/358 (53.91%), Postives = 238/358 (66.48%), Query Frame = 1


Query: 1   MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTP- 60
           + +H  F +RDV F E  FPFS+       A   L +P    S+ N  PPP+ P  PTP 
Sbjct: 477 LTTHKNFSTRDVIFHETTFPFSTQPLDHHPATHILPIPTDSLSHPNPTPPPTAPPFPTPT 536

Query: 61  ------PSPPIPSPPTPPSPPI-PSPTTPSSPP-PSPDSPTNSNPIPPDTSAPLRRSTRT 120
                 P+   P  PT PS PI PS  TP+ P   SP  PT   P PP   AP R+S R 
Sbjct: 537 DTFLSTPTETAPLTPTKPSLPIEPSLLTPTEPHLVSPPLPTL--PAPPAPPAP-RQSGRA 596

Query: 121 KQPPAWHKDYEMSSGVNHL--TSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTE 180
            +P    + Y +   V  L  +++SS  +GTRYPL HY+S++  SP+ R+F   I++  E
Sbjct: 597 LKPSVRLQGYHLYH-VQSLAPSATSSSMSGTRYPLSHYVSYAHLSPSHRSFACAISTLVE 656

Query: 181 PKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVER 240
           P T+ +A GDP W+  M+ E+ ALE+N+TW+L  LP GH+AIGC+WVYKIKYNSDG++ER
Sbjct: 657 PTTFPQANGDPQWRAVMDSELLALEQNNTWTLTTLPPGHRAIGCKWVYKIKYNSDGTIER 716

Query: 241 YKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLD 300
           YKARLVAKG+TQ EGIDY ETF+P AKL T+RCLL VA+ R W  HQ+DV NAFLHG+L 
Sbjct: 717 YKARLVAKGFTQREGIDYKETFAPVAKLITVRCLLAVASVRHWSLHQMDVHNAFLHGDLC 776

Query: 301 EEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
           EEVYM LPPGL RQGE+ VCRL+KSLYGLKQASR+WF  FST I  AGY Q  ADYSL
Sbjct: 777 EEVYMQLPPGLHRQGEHNVCRLNKSLYGLKQASRSWFHKFSTAISQAGYQQSMADYSL 830

[Close]

BLAST of CmoCh10G012700.1 vs. NCBI nr
Match: gi|694422107|ref|XP_009338880.1| (PREDICTED: uncharacterized protein LOC103931184 [Pyrus x bretschneideri])

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 192/366 (52.46%), Postives = 241/366 (65.85%), Query Frame = 1


Query: 1   MQSHTFFISRDVKFCEDDFPFSSA----SQTSTLAPSTLIVPLHDPSYSNIHPPPSIP-- 60
           +++HT   SRDV F E  FPF+ +       S + P  LI P   PS+   HP P+    
Sbjct: 453 LETHTISTSRDVHFHETIFPFAHSPPEHEDDSLVLP--LIPPDSLPSHGPHHPGPNPDDL 512

Query: 61  SPPTPPSPPIPSPP------TPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPL-RR 120
           +P T P+P +PSP       TP SPP    TTP SP P+  S     P P  +S PL R+
Sbjct: 513 NPTTTPTPTLPSPVPDLNTHTPSSPPPSPETTPISPTPATHSLALPTPPPAPSSQPLIRQ 572

Query: 121 STRTKQPPAWHKDYEMSSGVNHLTSSSSPG------TGTRYPLHHYLSFSRFSPTQRAFL 180
           S+R  +PPA+  DY     V H  +  +PG      + TR+PLH Y+S++  S   ++F+
Sbjct: 573 SSRLTRPPAYLNDY-----VAHHAALLAPGIASSSVSSTRHPLHRYVSYASLSSAHQSFV 632

Query: 181 ALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKY 240
             ++ Q EP +YD+A  DP W  AMN+E+ ALE N TWS+VPL  GH+AIGC+WV+KIKY
Sbjct: 633 HNVSHQMEPTSYDQARHDPQWVAAMNNELQALEENQTWSMVPLLAGHRAIGCKWVFKIKY 692

Query: 241 NSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQN 300
           +SDG++ERYKARLVAKG+TQ EGIDY ETF+P AKL T+RCLLTVAA R W  HQ+DVQN
Sbjct: 693 HSDGTIERYKARLVAKGFTQREGIDYKETFAPVAKLITVRCLLTVAAVRHWPFHQMDVQN 752

Query: 301 AFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQF 348
           AFLHG L EEVYM  PPG RRQGE  VCRL KSLYGLKQASR+WF  FS+ I + G+ Q 
Sbjct: 753 AFLHGELHEEVYMLPPPGYRRQGERVVCRLKKSLYGLKQASRSWFQKFSSAIHDIGFIQS 811

[Close]

BLAST of CmoCh10G012700.1 vs. NCBI nr
Match: gi|147795861|emb|CAN74229.1| (hypothetical protein VITISV_000584 [Vitis vinifera])

HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 181/348 (52.01%), Postives = 225/348 (64.66%), Query Frame = 1


Query: 1   MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTPP 60
           ++++ FF S DV F E  FPF +  Q        +++PL   SY  I    + P     P
Sbjct: 392 LETNKFFSSXDVVFHEHIFPFHTNPQEEQ--HDVVVLPLPQTSYEPITTETTKPQADDQP 451

Query: 61  SPPIPSPPTPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKD 120
                       PP+ S    +S   + D  T  +P PP T    RRS R KQP    ++
Sbjct: 452 ------------PPLLSSLESTSNERTLDLDTIVSPPPPAT----RRSDRIKQPNVXLRN 511

Query: 121 YEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDP 180
           + +       +S SS  +GTR+PL  Y+S+++ SP  R F+  IT+  EP TY++AV DP
Sbjct: 512 FHLYHTAKVXSSQSSSLSGTRHPLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQAVLDP 571

Query: 181 LWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYT 240
            WQ+AM  E+ ALE+NHTW+L PLP GH+ IGC+WVYKIKYNSDG+VERYKARLVAKG+T
Sbjct: 572 KWQEAMAAELHALEQNHTWTLTPLPSGHRPIGCKWVYKIKYNSDGTVERYKARLVAKGFT 631

Query: 241 QVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGL 300
           Q EGIDY ETFSP AKLTT+RCLL +AA R W  HQ+DVQNAFLHG+L EEVYM LPPG 
Sbjct: 632 QREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPPGF 691

Query: 301 RRQGEN-TVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
            RQGE   VCR +KSLYGLKQASR+WF  FS TIQ  G+ Q +ADYSL
Sbjct: 692 XRQGETPMVCRXNKSLYGLKQASRSWFXKFSATIQQDGFXQSRADYSL 721

The following BLAST results are available for this feature:

BLAST of CmoCh10G012700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.4e-39	43.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	2.5e-36	39.89	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M820_ARATH	2.8e-24	51.46	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0...	[more]
YC21B_YEAST	4.0e-10	29.14	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YL21B_YEAST	4.0e-10	29.14	Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of CmoCh10G012700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BNR5_VITVI	2.1e-103	58.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1	[more]
A0A151TBK6_CAJCA	1.3e-89	48.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5B780_VITVI	9.7e-80	52.01	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000584 PE=4 SV=1	[more]
A5BC87_VITVI	1.4e-78	51.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1	[more]
A5BCQ9_VITVI	3.1e-78	51.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1	[more]

BLAST of CmoCh10G012700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	1.4e-58	46.95	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.6e-25	51.46	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

BLAST of CmoCh10G012700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147783627\|emb\|CAN68148.1\|	3.1e-103	58.16	hypothetical protein VITISV_035665 [Vitis vinifera]	[more]
gi\|1012353243\|gb\|KYP64431.1\|	1.9e-89	48.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|658026612\|ref\|XP_008348733.1\|	1.5e-81	53.91	PREDICTED: uncharacterized protein LOC103411898, partial [Malus domestica]	[more]
gi\|694422107\|ref\|XP_009338880.1\|	1.9e-81	52.46	PREDICTED: uncharacterized protein LOC103931184 [Pyrus x bretschneideri]	[more]
gi\|147795861\|emb\|CAN74229.1\|	1.4e-79	52.01	hypothetical protein VITISV_000584 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh10G012700	CmoCh10G012700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh10G012700.1	CmoCh10G012700.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh10G012700.1.exon.1	CmoCh10G012700.1.exon.1	exon
CmoCh10G012700.1.exon.2	CmoCh10G012700.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh10G012700.1.CDS.1	CmoCh10G012700.1.CDS.1	CDS
CmoCh10G012700.1.CDS.2	CmoCh10G012700.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 196..352 score: 4.5
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 165..395 score: 1.4E-122coord: 1..124 score: 1.4E
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 165..395 score: 1.4E-122coord: 1..124 score: 1.4E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 195..426 score: 7.11