CmoCh10G012700 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh10G012700
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionGag-pol polyprotein
LocationCmo_Chr10 : 13088354 .. 13092458 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCTCACACATTCTTTATCAGCCGTGATGTCAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCTTATTGTACCACTTCATGATCCATCCTACTCAAACATCCATCCTCCACCTTCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATCCCTTCACCTACTACTCCGTCGTCTCCTCCACCTTCTCCAGATTCGCCCACTAATTCCAATCCTATCCCACCTGATACATCAGCTCCACTTCGACGTTCTACTCGTACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGTCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAGACAGAACCTAAAACCTATGACGAGGCAGTTGGCGACCCGTTATGGCAGCAGGCTATGAATGATGAAATTGCAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACTTGGTCATAAAGCTATTGGTTGTCGTTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTTATAAAGCTCGACTAGTAGCAAAGGGGTACACTCAGGTTGAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCGAAACTTACTACACTTCGTTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATGCAGGCTACACTCAGTTCAAAGCAGATTACTCTTTAGAGTTAACTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAATTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTCTTACTAAAGCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGGTGTGATCGACATACACTCTCCAACTTGAGGGGGAGTATTAAGAGGATATTTTGCCGTGATAATTAGTTAGAATATATCTTAGATATTTAGGGAGTTGTTAGTATAGATTTGATTAACCGTATATTTTATTTATTTACCAGATTTAATTAGATATATATTTTTTCTATTTTTAGGTATTAGTTGATAGTTTGTATCCTATTTAAACGTGGTAAACCTGAATGAAGATCATACTTCCGATCCCAATTCTATTTCTATTTCTCATTCTTAACAGACCTCTAAACAGAAAAATAATTGGAGCAATAAACAGAAAAATAATTGGAGCAAGATGGGTGTTCAGAAAAAAGCTTGGAGTTCACAGCATCTAAACAAGGAGGAGTGTTAAAGATCGCATATTTGTTTAGATTGCTGTCAGTTAGTATCTAATTAAATCTCCGTTAGAAGTTATATCTAGTTTTTTATTTAATTTAGTTTTTGATTTGATTAGATTTTATTTTGATTTGTTTACTGGTTTGTTACCAGATTTTCTACCGATTTTTAGGTAGATTTTTTTAGATATCTCTTTCTATTCTCTGTGCATATATAGAGCATTCTTGCTCTTCAAAATTTAATTATCTCATCTACCATTCAATAAATCCCTCTTTCACTAACAAGCCTGAAGCCCTGATACCAAATGATAAGATAAGGAATCAATACAAGGGGAATAAGATTCGGATTACCTTGTTGATCGAATATCTCAAGGTAAGAACACTTGATTGAGATTCAAATCACTCCAGAAGCAAGTTCGATCATGTCTAGCTTCAATGATTCTTGTTGATCAAATATCTCAAGACAAGAACACTTGATTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAATCTAAACTACATAGAATTGCAAAGAAACTTAGCCATTGACTAAAGAAAAGCACAAATGCTTCTTTTAATATATTTTCCAAGTCTGATTACAAATAAACATACAAGGCTTTATATAGCCTCAAAAAAATGAAACTATTAAAGCATTACAAAAGTTGTAACATTCACACTTTATGGCCATAATTAGCCATTATGTAAATGTAACCGAAATTAAATAAAAAGTCTTAAAATAGAATAACTCTAAATTACTCTAAATTATAACCCACCCAAAATTTACAACGATCAAACTTTATTCTTATTCAATGTAGCATGAATTGAAACATCTTTTGATAATTTTGACAACCTTTTCTTCACATCTTCATTGAAGTATATTGTAGGATTGATGTCTTTTGTTCATATCAGATTTGATAAGAGATATATTGGGTAGATATTTGATAAAGATTTGATAGAGATATATTTGGTAGATTATATCTCGTAGGTTTAAATCGGAAGCTATATCTAATAAATTGAAACCATATATATCCCATTAGGCAACTCTCAAAATGTACTTCTCTTCATTCTTTGTATTCTATTTTGTTGTACATACCTGAAGTCATCAATACAAAACCTTCAGCCAATATTCCTCCTTGTATTTTCTCTCTCCTGTTCTTTGTGTTCGTCTTGATCGAGTGTGTGCGTTGTTGAGCGATCCTAACAATTGGTATCAGAGCTAACAACTAGTATCGATCCTAACACTAGTAGTAATTATGCATGAGATGTAGATGATAGGAAAAGCACTTCTGGTTATGTGTTTTTACTCAGTGAATGAGCTGTCTTGGTCCTCTAAAAAACAACTTATAGTTACCAATTGTGTCTTGATCCTCCAAAAAATAACTTGCAGTTACTTTGTCTACTACTGAAGTAGAGTTTGTGGTCGGGAAGAGTATTGGAAAGGGGTGTGGACAAGGAGAGCATTGGAAAAACTTGGTCATTTTTAGAGTTGGCTAGTTTGTAAGCCTCTAAAAGCCAACCAAGTTGATTTGTATAACAATGTAATTGATTTCCGAGCTTTAGTTTGTGTGTTTACAACAAATTATATTAAAATAATAACATTTAATTATGAAGTATTGAGTTGAAGTTGAAGCACTATGTCACAAAAGAATTAATACCACTTAAACTAAATGCATAAAGCTGCAAGTAAATTGAAAGCATTTGTAATCAATTTTATGGAAAGATGGTTTGATTAGATCATTTCTTTAGGCGTGAAATTATATTAAAATAATGACATTTTAATTATGAAGTATGAAGTATGTTTCAAAGGATAAATAAAATATTTTTAGTATGTTTGTCCATCCAATTTTCTTCTAATAATTTTATAGAATAAACATCTCACTGTTCATAAATAAATAAAAAATAAAACTTTTGGAGTATTTATCCAAAATAAATACCCTCCCAACATGGTGGAAGAATAAGATGTACATATTATAACAAGCAGACAGGAAGAATAACATAACTAACTACCTTGAATGAAACATCATAACATCTAAATGGAACATTTAGGTTCAACTGTATTGAAATTCTTTGAATTCAATAATAAAGATGTGGTTTTTAATTTAGCTTCTAAGCTGCTTTTCCAAATGGAGGAACTGTTTAATCTTCTTGTGTGTTGAAACAAGGTTTCAGAAGGAGTGCAGATCAGATTTGTGATCTCACCACCTTCTTCTTTCTTGTTTATTGACTTCCCAATCAAATTGCAGTATGTGTTCAGGTTCCATGACGACAGAAAGAGAGAAATAAATGAAGAATCCAGCCGTTGA

mRNA sequence

ATGCAATCTCACACATTCTTTATCAGCCGTGATGTCAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCTTATTGTACCACTTCATGATCCATCCTACTCAAACATCCATCCTCCACCTTCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATCCCTTCACCTACTACTCCGTCGTCTCCTCCACCTTCTCCAGATTCGCCCACTAATTCCAATCCTATCCCACCTGATACATCAGCTCCACTTCGACGTTCTACTCGTACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGTCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAGACAGAACCTAAAACCTATGACGAGGCAGTTGGCGACCCGTTATGGCAGCAGGCTATGAATGATGAAATTGCAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACTTGGTCATAAAGCTATTGGTTGTCGTTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTTATAAAGCTCGACTAGTAGCAAAGGGGTACACTCAGGTTGAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCGAAACTTACTACACTTCGTTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATGCAGGCTACACTCAGTTCAAAGCAGATTACTCTTTAGAGTTAACTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAATTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTCTTACTAAAGCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGAAGGAGTGCAGATCAGATTTGTGATCTCACCACCTTCTTCTTTCTTGTTTATTGACTTCCCAATCAAATTGCAGTATGTGTTCAGGTTCCATGACGACAGAAAGAGAGAAATAAATGAAGAATCCAGCCGTTGA

Coding sequence (CDS)

ATGCAATCTCACACATTCTTTATCAGCCGTGATGTCAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCTTATTGTACCACTTCATGATCCATCCTACTCAAACATCCATCCTCCACCTTCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATTCCTTCACCTCCTACTCCTCCTTCACCTCCTATCCCTTCACCTACTACTCCGTCGTCTCCTCCACCTTCTCCAGATTCGCCCACTAATTCCAATCCTATCCCACCTGATACATCAGCTCCACTTCGACGTTCTACTCGTACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGTCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGTATCCCCTTCATCATTACCTTTCATTCTCTCGTTTTTCTCCTACTCAACGTGCTTTTCTAGCTCTTATTACATCCCAGACAGAACCTAAAACCTATGACGAGGCAGTTGGCGACCCGTTATGGCAGCAGGCTATGAATGATGAAATTGCAGCTTTGGAACGTAATCATACATGGTCTCTCGTTCCTCTACCACTTGGTCATAAAGCTATTGGTTGTCGTTGGGTGTACAAAATTAAATACAACTCTGATGGTTCTGTTGAACGTTATAAAGCTCGACTAGTAGCAAAGGGGTACACTCAGGTTGAAGGTATTGATTACACAGAAACATTTTCCCCTACAGCGAAACTTACTACACTTCGTTGCTTACTCACTGTTGCTGCTGCTCGAAAATGGTTCACCCATCAGTTGGATGTTCAAAATGCCTTTCTCCATGGTAATCTAGACGAGGAAGTTTATATGTCTTTACCACCAGGTCTTCGCCGACAGGGGGAGAATACAGTATGTCGGCTCCATAAATCTCTTTATGGATTAAAACAGGCTTCTCGCAATTGGTTCTCCATATTTTCTACAACTATACAAAATGCAGGCTACACTCAGTTCAAAGCAGATTACTCTTTAGAGTTAACTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAGCAGAAGCCGAGTATCGAGCTATGGCAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCAGCCAATCCAGTTTTTCATGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAATTACAAGCTGGAATCATCAAACCGTGTTATGTTTCGACCAAAATGCAATTGGCAGATGTTCTTACTAAAGCTTTGGGAAGACAGCAATTTGACTTTTTGAAGGACAAGTTGGAAGGAGTGCAGATCAGATTTGTGATCTCACCACCTTCTTCTTTCTTGTTTATTGACTTCCCAATCAAATTGCAGTATGTGTTCAGGTTCCATGACGACAGAAAGAGAGAAATAAATGAAGAATCCAGCCGTTGA
Homology
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BLAST of CmoCh10G012700 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-39
Identity = 81/186 (43.55%), Postives = 123/186 (66.13%), Query Frame = 1 

Query: 163 LITSQTEPKTYDEAVGDPLWQQ---AMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKI 222
           LI+   EP++  E +  P   Q   AM +E+ +L++N T+ LV LP G + + C+WV+K+
Sbjct: 804 LISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKL 863

Query: 223 KYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDV 282
           K + D  + RYKARLV KG+ Q +GID+ E FSP  K+T++R +L++AA+      QLDV
Sbjct: 864 KKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDV 923

Query: 283 QNAFLHGNLDEEVYMSLPPGLRRQG-ENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGY 342
           + AFLHG+L+EE+YM  P G    G ++ VC+L+KSLYGLKQA R W+  F + +++  Y
Sbjct: 924 KTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTY 983

Query: 343 TQFKAD 345
            +  +D
Sbjct: 984 LKTYSD 989

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BLAST of CmoCh10G012700 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 154.8 bits (390), Expect = 2.5e-36
Identity = 71/178 (39.89%), Postives = 111/178 (62.36%), Query Frame = 1 

Query: 182  WQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQ 241
            W++A+N E+ A + N+TW++   P     +  RWV+ +KYN  G+  RYKARLVA+G+TQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 242  VEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLR 301
               IDY ETF+P A++++ R +L++        HQ+DV+ AFL+G L EE+YM LP G+ 
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

Query: 302  RQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSLELTWKSKKQTNV 360
               +N VC+L+K++YGLKQA+R WF +F   ++   +     D  + +  K     N+
Sbjct: 1026 CNSDN-VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1082

[Close]
BLAST of CmoCh10G012700 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-24
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1 

Query: 165 TSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSD 224
           T + EPK+   A+ DP W QAM +E+ AL RN TW LVP P+    +GC+WV+K K +SD
Sbjct: 23  TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82

Query: 225 GSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVA 268
           G+++R KARLVAKG+ Q EGI + ET+SP  +  T+R +L VA
Sbjct: 83  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]
BLAST of CmoCh10G012700 vs. Swiss-Prot
Match: YC21B_YEAST (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-10
Identity = 51/175 (29.14%), Postives = 85/175 (48.57%), Query Frame = 1 

Query: 173  YDEAVG-------DPLWQQAMNDEIAALERNHTWSLVPLPLGH-----KAIGCRWVYKIK 232
            YDEA+           + +A + EI+ L + +TW        +     K I   +++  K
Sbjct: 1249 YDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKK 1308

Query: 233  YNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQ 292
               DG+   +KAR VA+G  Q      ++  S T     L   L++A    ++  QLD+ 
Sbjct: 1309 --RDGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDIS 1368

Query: 293  NAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQN 336
            +A+L+ ++ EE+Y+  PP L     + + RL KSLYGLKQ+  NW+    + + N
Sbjct: 1369 SAYLYADIKEELYIRPPPHLGL--NDKLLRLRKSLYGLKQSGANWYETIKSYLIN 1416

[Close]
BLAST of CmoCh10G012700 vs. Swiss-Prot
Match: YL21B_YEAST (Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR1 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-10
Identity = 51/175 (29.14%), Postives = 85/175 (48.57%), Query Frame = 1 

Query: 173  YDEAVG-------DPLWQQAMNDEIAALERNHTWSLVPLPLGH-----KAIGCRWVYKIK 232
            YDEA+           + +A + EI+ L + +TW        +     K I   +++  K
Sbjct: 1249 YDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNKK 1308

Query: 233  YNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQ 292
               DG+   +KAR VA+G  Q      ++  S T     L   L++A    ++  QLD+ 
Sbjct: 1309 --RDGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDIS 1368

Query: 293  NAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQN 336
            +A+L+ ++ EE+Y+  PP L     + + RL KSLYGLKQ+  NW+    + + N
Sbjct: 1369 SAYLYADIKEELYIRPPPHLGL--NDKLLRLRKSLYGLKQSGANWYETIKSYLIN 1416

[Close]
BLAST of CmoCh10G012700 vs. TrEMBL
Match: A5BNR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 2.1e-103
Identity = 221/380 (58.16%), Postives = 268/380 (70.53%), Query Frame = 1 

Query: 1    MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIP------ 60
            +Q+    +SRDV F E+ FPF S+S  S     +L +PL   S+ +   P S+P      
Sbjct: 1031 LQTQKISVSRDVFFRENIFPFHSSSSQSQQHSPSLPLPL-PISFDSTPQPISLPRFSPSS 1090

Query: 61   SPPTPPSPPIPSPPTP---------------PSPPIPSPTTPSSPPPSPDSPTNSNPIPP 120
            +PP     P+ SPP+                P P  PSP++ SSPP  P  P+N++   P
Sbjct: 1091 TPPLSHHNPVSSPPSSNTDVPEPLSHESVASPLPSSPSPSSLSSPPSVPLVPSNTSAPSP 1150

Query: 121  DTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRA 180
                PLRRSTR  QPPAWH DY MS+ +NH ++ SS   GTRYPL  +LSF RFSP  RA
Sbjct: 1151 THEPPLRRSTRHIQPPAWHHDYVMSAQLNHSSTQSSSRQGTRYPLSSHLSFFRFSPHHRA 1210

Query: 181  FLALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKI 240
            FLAL+T+QTEP ++++A  DP W+QAM+ E+ ALERN+TW +VPLP GHK IGCRWVYKI
Sbjct: 1211 FLALLTAQTEPSSFEQADCDPRWRQAMSTELQALERNNTWEMVPLPPGHKPIGCRWVYKI 1270

Query: 241  KYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDV 300
            KY+SDG++ERYKARLVAKGYTQV GIDY ETFSPTAKLTTLRCLLTVAA+R W+ HQLDV
Sbjct: 1271 KYHSDGTIERYKARLVAKGYTQVAGIDYQETFSPTAKLTTLRCLLTVAASRNWYIHQLDV 1330

Query: 301  QNAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYT 360
             NAFLHGNL EEVYM+ PPGLRRQGEN VCRL KS+YGLKQASRNWFS F+ T+++AGY 
Sbjct: 1331 HNAFLHGNLQEEVYMTPPPGLRRQGENLVCRLRKSIYGLKQASRNWFSTFTATVKSAGYI 1390

[Close]
BLAST of CmoCh10G012700 vs. TrEMBL
Match: A0A151TBK6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_019027 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.3e-89
Identity = 193/397 (48.61%), Postives = 253/397 (63.73%), Query Frame = 1 

Query: 72  SPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLT 131
           S  +P+ +  +S P    SP  S P+P      LRRS R   PP + KD+      N LT
Sbjct: 433 SHTMPNQSVTTSRPAH--SPQQSPPLP------LRRSQRIPFPPTYLKDFHY----NFLT 492

Query: 132 SSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDPLWQQAMNDEIA 191
           SS     G  +PL   ++++  S +   ++  +++  EPK Y +AV    W  AM  EI 
Sbjct: 493 SSPELSKGISHPLSSVINYNTLSSSHLHYVLSLSTHEEPKFYHQAVKSQEWVVAMKAEID 552

Query: 192 ALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQVEGIDYTETF 251
           AL  N+TW++V LP G   IGC+WVYKIKY SDGSVERYKARLVAKG+TQ EG+DY ET 
Sbjct: 553 ALTANNTWTIVDLPSGKHPIGCKWVYKIKYRSDGSVERYKARLVAKGFTQTEGLDYFETC 612

Query: 252 SPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLRRQGENTVCRL 311
           +P  KLTT+R LL VA+++ WF HQLDV NAFLHG+L+EEVYM++P G+     N VC+L
Sbjct: 613 APVEKLTTVRLLLAVASSQNWFLHQLDVNNAFLHGDLEEEVYMTIPQGVVWSKPNQVCKL 672

Query: 312 HKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSLELTWKSKKQTNVSRSSAEAEYRAM 371
           HKSLY LKQASR        ++               ++W+SKKQ+ VSRSS+EA+YRA+
Sbjct: 673 HKSLYMLKQASR----FLGNSL---------------ISWRSKKQSTVSRSSSEAKYRAL 732

Query: 372 ANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERTKHIEIDCHIVREK 431
           A+T  E+ WL Y+L +L VP + PALL+CD+ +A HIAA  VFHERTKHI+IDC++VRE 
Sbjct: 733 ASTSCEIQWLTYLLTNLAVPFTAPALLFCDSASARHIAAISVFHERTKHIDIDCYVVREH 792

Query: 432 LQAGIIKPCYVSTKMQLADVLTKALGRQQFDFLKDKL 469
           LQ  ++    +ST  Q AD+ TKAL    F  L  KL
Sbjct: 793 LQNHLLHLLPISTTEQPADLFTKALDPSPFSHLLSKL 798

[Close]
BLAST of CmoCh10G012700 vs. TrEMBL
Match: A5B780_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000584 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 9.7e-80
Identity = 181/348 (52.01%), Postives = 225/348 (64.66%), Query Frame = 1 

Query: 1   MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTPP 60
           ++++ FF S DV F E  FPF +  Q        +++PL   SY  I    + P     P
Sbjct: 392 LETNKFFSSXDVVFHEHIFPFHTNPQEEQ--HDVVVLPLPQTSYEPITTETTKPQADDQP 451

Query: 61  SPPIPSPPTPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKD 120
                       PP+ S    +S   + D  T  +P PP T    RRS R KQP    ++
Sbjct: 452 ------------PPLLSSLESTSNERTLDLDTIVSPPPPAT----RRSDRIKQPNVXLRN 511

Query: 121 YEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDP 180
           + +       +S SS  +GTR+PL  Y+S+++ SP  R F+  IT+  EP TY++AV DP
Sbjct: 512 FHLYHTAKVXSSQSSSLSGTRHPLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQAVLDP 571

Query: 181 LWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYT 240
            WQ+AM  E+ ALE+NHTW+L PLP GH+ IGC+WVYKIKYNSDG+VERYKARLVAKG+T
Sbjct: 572 KWQEAMAAELHALEQNHTWTLTPLPSGHRPIGCKWVYKIKYNSDGTVERYKARLVAKGFT 631

Query: 241 QVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGL 300
           Q EGIDY ETFSP AKLTT+RCLL +AA R W  HQ+DVQNAFLHG+L EEVYM LPPG 
Sbjct: 632 QREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPPGF 691

Query: 301 RRQGEN-TVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
            RQGE   VCR +KSLYGLKQASR+WF  FS TIQ  G+ Q +ADYSL
Sbjct: 692 XRQGETPMVCRXNKSLYGLKQASRSWFXKFSATIQQDGFXQSRADYSL 721

[Close]
BLAST of CmoCh10G012700 vs. TrEMBL
Match: A5BC87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 182/353 (51.56%), Postives = 227/353 (64.31%), Query Frame = 1 

Query: 1   MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTPP 60
           ++++ FF SRDV F E  FPF +  Q        +++PL   SY                
Sbjct: 470 LETNKFFSSRDVVFHEHIFPFHTNPQEEQ--HDVVVLPLPQTSYE--------------- 529

Query: 61  SPPIPSPPTPP-----SPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPP 120
             PI +  T P     SPP+ S    +    + D  T  +P PP T    RR  R KQP 
Sbjct: 530 --PITTETTKPQADDQSPPLLSSLESTFNERTLDLDTIVSPPPPAT----RRFDRIKQPN 589

Query: 121 AWHKDYEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDE 180
              +++ +       +S SS  +GTR+PL+ Y+S+++ SP  R F+  IT+  EP TY++
Sbjct: 590 VQFQNFHLYHTAKVASSQSSSLSGTRHPLNRYISYAQLSPKYRNFVCAITTLVEPTTYEQ 649

Query: 181 AVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLV 240
           AV DP WQ+AM  E+ ALE+NHTW+L PLP GH+ IGC+WVYKIKYNSDG+VERYKA+LV
Sbjct: 650 AVLDPKWQEAMAAELHALEQNHTWTLTPLPSGHRPIGCKWVYKIKYNSDGTVERYKAQLV 709

Query: 241 AKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMS 300
           AKG+TQ EGIDY ETFSP AKLTT+RCLL +AA R W  HQ+DVQNAFLHG+L EEVYM 
Sbjct: 710 AKGFTQREGIDYKETFSPMAKLTTIRCLLAIAAVRHWSFHQMDVQNAFLHGDLLEEVYMQ 769

Query: 301 LPPGLRRQGEN-TVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
           LPPG  RQGE   VCRL+KSLYGLKQASR+WF  FS TIQ  G+ Q  ADYSL
Sbjct: 770 LPPGFCRQGETLMVCRLNKSLYGLKQASRSWFQKFSATIQQNGFHQSMADYSL 799

[Close]
BLAST of CmoCh10G012700 vs. TrEMBL
Match: A5BCQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.1e-78
Identity = 180/348 (51.72%), Postives = 224/348 (64.37%), Query Frame = 1 

Query: 1    MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTPP 60
            + ++ FF S DV F E  FPF +  Q        +++PL   SY  I    + P     P
Sbjct: 800  LXTNKFFSSXDVVFHEHIFPFHTNPQEEQ--HDVVVLPLPQTSYEPITTETTKPQADDQP 859

Query: 61   SPPIPSPPTPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKD 120
                        PP+ S    +S   +    T  +P PP T    RRS R KQP    ++
Sbjct: 860  ------------PPLLSSLESTSNERTLXLDTIVSPPPPTT----RRSDRIKQPNVHLRN 919

Query: 121  YEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDP 180
            + +       +S SS  +GTR+PL  Y+S+++ SP  R F+  IT+  EP TY++AV DP
Sbjct: 920  FHLYHTAKVASSQSSSLSGTRHPLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQAVLDP 979

Query: 181  LWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYT 240
             WQ+AM  E+ ALE+NHTW+L PLP GH+ IGC+WVYKIKYNSDG+VERYKARLVAKG+T
Sbjct: 980  KWQEAMAAELHALEQNHTWTLTPLPYGHRPIGCKWVYKIKYNSDGTVERYKARLVAKGFT 1039

Query: 241  QVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGL 300
            Q EGIDY ETFSP AKLTT+RCLL +AA R W  HQ+DVQNAFLHG+L EEVYM LP G 
Sbjct: 1040 QREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPLGF 1099

Query: 301  RRQGEN-TVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
            R+QGE   VCRL+KSLYGLKQASR+WF  FS TIQ  G+ Q +ADYSL
Sbjct: 1100 RQQGETPMVCRLNKSLYGLKQASRSWFRKFSATIQQDGFHQSRADYSL 1129

[Close]
BLAST of CmoCh10G012700 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-58
Identity = 131/279 (46.95%), Postives = 170/279 (60.93%), Query Frame = 1 

Query: 79  TTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLTSSSSPGT 138
           +T SS      S    N +P  +     R TR    PA+ +DY   S  +          
Sbjct: 8   STSSSSIDIMPSANIQNDVPEPSVHTSHRRTRK---PAYLQDYYCHSVASL--------- 67

Query: 139 GTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHT 198
            T + +  +LS+ + SP   +FL  I    EP TY+EA    +W  AM+DEI A+E  HT
Sbjct: 68  -TIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHT 127

Query: 199 WSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLT 258
           W +  LP   K IGC+WVYKIKYNSDG++ERYKARLVAKGYTQ EGID+ ETFSP  KLT
Sbjct: 128 WEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLT 187

Query: 259 TLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPG-LRRQGE----NTVCRLHK 318
           +++ +L ++A   +  HQLD+ NAFL+G+LDEE+YM LPPG   RQG+    N VC L K
Sbjct: 188 SVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKK 247

Query: 319 SLYGLKQASRNWFSIFSTTIQNAGYTQFKAD--YSLELT 351
           S+YGLKQASR WF  FS T+   G+ Q  +D  Y L++T
Sbjct: 248 SIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKIT 273

[Close]
BLAST of CmoCh10G012700 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-25
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1 

Query: 165 TSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSD 224
           T + EPK+   A+ DP W QAM +E+ AL RN TW LVP P+    +GC+WV+K K +SD
Sbjct: 23  TIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSD 82

Query: 225 GSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVA 268
           G+++R KARLVAKG+ Q EGI + ET+SP  +  T+R +L VA
Sbjct: 83  GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]
BLAST of CmoCh10G012700 vs. NCBI nr
Match: gi|147783627|emb|CAN68148.1| (hypothetical protein VITISV_035665 [Vitis vinifera])

HSP 1 Score: 384.4 bits (986), Expect = 3.1e-103
Identity = 221/380 (58.16%), Postives = 268/380 (70.53%), Query Frame = 1 

Query: 1    MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIP------ 60
            +Q+    +SRDV F E+ FPF S+S  S     +L +PL   S+ +   P S+P      
Sbjct: 1031 LQTQKISVSRDVFFRENIFPFHSSSSQSQQHSPSLPLPL-PISFDSTPQPISLPRFSPSS 1090

Query: 61   SPPTPPSPPIPSPPTP---------------PSPPIPSPTTPSSPPPSPDSPTNSNPIPP 120
            +PP     P+ SPP+                P P  PSP++ SSPP  P  P+N++   P
Sbjct: 1091 TPPLSHHNPVSSPPSSNTDVPEPLSHESVASPLPSSPSPSSLSSPPSVPLVPSNTSAPSP 1150

Query: 121  DTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRA 180
                PLRRSTR  QPPAWH DY MS+ +NH ++ SS   GTRYPL  +LSF RFSP  RA
Sbjct: 1151 THEPPLRRSTRHIQPPAWHHDYVMSAQLNHSSTQSSSRQGTRYPLSSHLSFFRFSPHHRA 1210

Query: 181  FLALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKI 240
            FLAL+T+QTEP ++++A  DP W+QAM+ E+ ALERN+TW +VPLP GHK IGCRWVYKI
Sbjct: 1211 FLALLTAQTEPSSFEQADCDPRWRQAMSTELQALERNNTWEMVPLPPGHKPIGCRWVYKI 1270

Query: 241  KYNSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDV 300
            KY+SDG++ERYKARLVAKGYTQV GIDY ETFSPTAKLTTLRCLLTVAA+R W+ HQLDV
Sbjct: 1271 KYHSDGTIERYKARLVAKGYTQVAGIDYQETFSPTAKLTTLRCLLTVAASRNWYIHQLDV 1330

Query: 301  QNAFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYT 360
             NAFLHGNL EEVYM+ PPGLRRQGEN VCRL KS+YGLKQASRNWFS F+ T+++AGY 
Sbjct: 1331 HNAFLHGNLQEEVYMTPPPGLRRQGENLVCRLRKSIYGLKQASRNWFSTFTATVKSAGYI 1390

[Close]
BLAST of CmoCh10G012700 vs. NCBI nr
Match: gi|1012353243|gb|KYP64431.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89
Identity = 193/397 (48.61%), Postives = 253/397 (63.73%), Query Frame = 1 

Query: 72  SPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGVNHLT 131
           S  +P+ +  +S P    SP  S P+P      LRRS R   PP + KD+      N LT
Sbjct: 433 SHTMPNQSVTTSRPAH--SPQQSPPLP------LRRSQRIPFPPTYLKDFHY----NFLT 492

Query: 132 SSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDPLWQQAMNDEIA 191
           SS     G  +PL   ++++  S +   ++  +++  EPK Y +AV    W  AM  EI 
Sbjct: 493 SSPELSKGISHPLSSVINYNTLSSSHLHYVLSLSTHEEPKFYHQAVKSQEWVVAMKAEID 552

Query: 192 ALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYTQVEGIDYTETF 251
           AL  N+TW++V LP G   IGC+WVYKIKY SDGSVERYKARLVAKG+TQ EG+DY ET 
Sbjct: 553 ALTANNTWTIVDLPSGKHPIGCKWVYKIKYRSDGSVERYKARLVAKGFTQTEGLDYFETC 612

Query: 252 SPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGLRRQGENTVCRL 311
           +P  KLTT+R LL VA+++ WF HQLDV NAFLHG+L+EEVYM++P G+     N VC+L
Sbjct: 613 APVEKLTTVRLLLAVASSQNWFLHQLDVNNAFLHGDLEEEVYMTIPQGVVWSKPNQVCKL 672

Query: 312 HKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSLELTWKSKKQTNVSRSSAEAEYRAM 371
           HKSLY LKQASR        ++               ++W+SKKQ+ VSRSS+EA+YRA+
Sbjct: 673 HKSLYMLKQASR----FLGNSL---------------ISWRSKKQSTVSRSSSEAKYRAL 732

Query: 372 ANTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERTKHIEIDCHIVREK 431
           A+T  E+ WL Y+L +L VP + PALL+CD+ +A HIAA  VFHERTKHI+IDC++VRE 
Sbjct: 733 ASTSCEIQWLTYLLTNLAVPFTAPALLFCDSASARHIAAISVFHERTKHIDIDCYVVREH 792

Query: 432 LQAGIIKPCYVSTKMQLADVLTKALGRQQFDFLKDKL 469
           LQ  ++    +ST  Q AD+ TKAL    F  L  KL
Sbjct: 793 LQNHLLHLLPISTTEQPADLFTKALDPSPFSHLLSKL 798

[Close]
BLAST of CmoCh10G012700 vs. NCBI nr
Match: gi|658026612|ref|XP_008348733.1| (PREDICTED: uncharacterized protein LOC103411898, partial [Malus domestica])

HSP 1 Score: 312.4 bits (799), Expect = 1.5e-81
Identity = 193/358 (53.91%), Postives = 238/358 (66.48%), Query Frame = 1 

Query: 1   MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTP- 60
           + +H  F +RDV F E  FPFS+       A   L +P    S+ N  PPP+ P  PTP 
Sbjct: 477 LTTHKNFSTRDVIFHETTFPFSTQPLDHHPATHILPIPTDSLSHPNPTPPPTAPPFPTPT 536

Query: 61  ------PSPPIPSPPTPPSPPI-PSPTTPSSPP-PSPDSPTNSNPIPPDTSAPLRRSTRT 120
                 P+   P  PT PS PI PS  TP+ P   SP  PT   P PP   AP R+S R 
Sbjct: 537 DTFLSTPTETAPLTPTKPSLPIEPSLLTPTEPHLVSPPLPTL--PAPPAPPAP-RQSGRA 596

Query: 121 KQPPAWHKDYEMSSGVNHL--TSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTE 180
            +P    + Y +   V  L  +++SS  +GTRYPL HY+S++  SP+ R+F   I++  E
Sbjct: 597 LKPSVRLQGYHLYH-VQSLAPSATSSSMSGTRYPLSHYVSYAHLSPSHRSFACAISTLVE 656

Query: 181 PKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVER 240
           P T+ +A GDP W+  M+ E+ ALE+N+TW+L  LP GH+AIGC+WVYKIKYNSDG++ER
Sbjct: 657 PTTFPQANGDPQWRAVMDSELLALEQNNTWTLTTLPPGHRAIGCKWVYKIKYNSDGTIER 716

Query: 241 YKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLD 300
           YKARLVAKG+TQ EGIDY ETF+P AKL T+RCLL VA+ R W  HQ+DV NAFLHG+L 
Sbjct: 717 YKARLVAKGFTQREGIDYKETFAPVAKLITVRCLLAVASVRHWSLHQMDVHNAFLHGDLC 776

Query: 301 EEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
           EEVYM LPPGL RQGE+ VCRL+KSLYGLKQASR+WF  FST I  AGY Q  ADYSL
Sbjct: 777 EEVYMQLPPGLHRQGEHNVCRLNKSLYGLKQASRSWFHKFSTAISQAGYQQSMADYSL 830

[Close]
BLAST of CmoCh10G012700 vs. NCBI nr
Match: gi|694422107|ref|XP_009338880.1| (PREDICTED: uncharacterized protein LOC103931184 [Pyrus x bretschneideri])

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 192/366 (52.46%), Postives = 241/366 (65.85%), Query Frame = 1 

Query: 1   MQSHTFFISRDVKFCEDDFPFSSA----SQTSTLAPSTLIVPLHDPSYSNIHPPPSIP-- 60
           +++HT   SRDV F E  FPF+ +       S + P  LI P   PS+   HP P+    
Sbjct: 453 LETHTISTSRDVHFHETIFPFAHSPPEHEDDSLVLP--LIPPDSLPSHGPHHPGPNPDDL 512

Query: 61  SPPTPPSPPIPSPP------TPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPL-RR 120
           +P T P+P +PSP       TP SPP    TTP SP P+  S     P P  +S PL R+
Sbjct: 513 NPTTTPTPTLPSPVPDLNTHTPSSPPPSPETTPISPTPATHSLALPTPPPAPSSQPLIRQ 572

Query: 121 STRTKQPPAWHKDYEMSSGVNHLTSSSSPG------TGTRYPLHHYLSFSRFSPTQRAFL 180
           S+R  +PPA+  DY     V H  +  +PG      + TR+PLH Y+S++  S   ++F+
Sbjct: 573 SSRLTRPPAYLNDY-----VAHHAALLAPGIASSSVSSTRHPLHRYVSYASLSSAHQSFV 632

Query: 181 ALITSQTEPKTYDEAVGDPLWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKY 240
             ++ Q EP +YD+A  DP W  AMN+E+ ALE N TWS+VPL  GH+AIGC+WV+KIKY
Sbjct: 633 HNVSHQMEPTSYDQARHDPQWVAAMNNELQALEENQTWSMVPLLAGHRAIGCKWVFKIKY 692

Query: 241 NSDGSVERYKARLVAKGYTQVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQN 300
           +SDG++ERYKARLVAKG+TQ EGIDY ETF+P AKL T+RCLLTVAA R W  HQ+DVQN
Sbjct: 693 HSDGTIERYKARLVAKGFTQREGIDYKETFAPVAKLITVRCLLTVAAVRHWPFHQMDVQN 752

Query: 301 AFLHGNLDEEVYMSLPPGLRRQGENTVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQF 348
           AFLHG L EEVYM  PPG RRQGE  VCRL KSLYGLKQASR+WF  FS+ I + G+ Q 
Sbjct: 753 AFLHGELHEEVYMLPPPGYRRQGERVVCRLKKSLYGLKQASRSWFQKFSSAIHDIGFIQS 811

[Close]
BLAST of CmoCh10G012700 vs. NCBI nr
Match: gi|147795861|emb|CAN74229.1| (hypothetical protein VITISV_000584 [Vitis vinifera])

HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 181/348 (52.01%), Postives = 225/348 (64.66%), Query Frame = 1 

Query: 1   MQSHTFFISRDVKFCEDDFPFSSASQTSTLAPSTLIVPLHDPSYSNIHPPPSIPSPPTPP 60
           ++++ FF S DV F E  FPF +  Q        +++PL   SY  I    + P     P
Sbjct: 392 LETNKFFSSXDVVFHEHIFPFHTNPQEEQ--HDVVVLPLPQTSYEPITTETTKPQADDQP 451

Query: 61  SPPIPSPPTPPSPPIPSPTTPSSPPPSPDSPTNSNPIPPDTSAPLRRSTRTKQPPAWHKD 120
                       PP+ S    +S   + D  T  +P PP T    RRS R KQP    ++
Sbjct: 452 ------------PPLLSSLESTSNERTLDLDTIVSPPPPAT----RRSDRIKQPNVXLRN 511

Query: 121 YEMSSGVNHLTSSSSPGTGTRYPLHHYLSFSRFSPTQRAFLALITSQTEPKTYDEAVGDP 180
           + +       +S SS  +GTR+PL  Y+S+++ SP  R F+  IT+  EP TY++AV DP
Sbjct: 512 FHLYHTAKVXSSQSSSLSGTRHPLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQAVLDP 571

Query: 181 LWQQAMNDEIAALERNHTWSLVPLPLGHKAIGCRWVYKIKYNSDGSVERYKARLVAKGYT 240
            WQ+AM  E+ ALE+NHTW+L PLP GH+ IGC+WVYKIKYNSDG+VERYKARLVAKG+T
Sbjct: 572 KWQEAMAAELHALEQNHTWTLTPLPSGHRPIGCKWVYKIKYNSDGTVERYKARLVAKGFT 631

Query: 241 QVEGIDYTETFSPTAKLTTLRCLLTVAAARKWFTHQLDVQNAFLHGNLDEEVYMSLPPGL 300
           Q EGIDY ETFSP AKLTT+RCLL +AA R W  HQ+DVQNAFLHG+L EEVYM LPPG 
Sbjct: 632 QREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPPGF 691

Query: 301 RRQGEN-TVCRLHKSLYGLKQASRNWFSIFSTTIQNAGYTQFKADYSL 348
            RQGE   VCR +KSLYGLKQASR+WF  FS TIQ  G+ Q +ADYSL
Sbjct: 692 XRQGETPMVCRXNKSLYGLKQASRSWFXKFSATIQQDGFXQSRADYSL 721

The following BLAST results are available for this feature:
BLAST of CmoCh10G012700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC1.4e-3943.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME2.5e-3639.89Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M820_ARATH2.8e-2451.46Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0... [more]
YC21B_YEAST4.0e-1029.14Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YL21B_YEAST4.0e-1029.14Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
BLAST of CmoCh10G012700 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BNR5_VITVI2.1e-10358.16Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1[more]
A0A151TBK6_CAJCA1.3e-8948.61Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5B780_VITVI9.7e-8052.01Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000584 PE=4 SV=1[more]
A5BC87_VITVI1.4e-7851.56Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1[more]
A5BCQ9_VITVI3.1e-7851.72Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1[more]
BLAST of CmoCh10G012700 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.11.4e-5846.95 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00820.11.6e-2551.46ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
BLAST of CmoCh10G012700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147783627|emb|CAN68148.1|3.1e-10358.16hypothetical protein VITISV_035665 [Vitis vinifera][more]
gi|1012353243|gb|KYP64431.1|1.9e-8948.61Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|658026612|ref|XP_008348733.1|1.5e-8153.91PREDICTED: uncharacterized protein LOC103411898, partial [Malus domestica][more]
gi|694422107|ref|XP_009338880.1|1.9e-8152.46PREDICTED: uncharacterized protein LOC103931184 [Pyrus x bretschneideri][more]
gi|147795861|emb|CAN74229.1|1.4e-7952.01hypothetical protein VITISV_000584 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G012700.1CmoCh10G012700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 196..352
score: 4.5
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 165..395
score: 1.4E-122coord: 1..124
score: 1.4E
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 165..395
score: 1.4E-122coord: 1..124
score: 1.4E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 195..426
score: 7.11

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh10G012700Cucumber (Chinese Long) v3cmocucB0048
CmoCh10G012700Watermelon (97103) v2cmowmbB047
CmoCh10G012700Wax gourdcmowgoB0073
CmoCh10G012700Cucurbita moschata (Rifu)cmocmoB048
CmoCh10G012700Cucumber (Gy14) v1cgycmoB0048
CmoCh10G012700Cucurbita maxima (Rimu)cmacmoB067
CmoCh10G012700Wild cucumber (PI 183967)cmocpiB045
CmoCh10G012700Cucumber (Chinese Long) v2cmocuB042
CmoCh10G012700Melon (DHL92) v3.5.1cmomeB060
CmoCh10G012700Watermelon (Charleston Gray)cmowcgB046
CmoCh10G012700Watermelon (97103) v1cmowmB038
CmoCh10G012700Cucurbita pepo (Zucchini)cmocpeB073
CmoCh10G012700Bottle gourd (USVL1VR-Ls)cmolsiB062
CmoCh10G012700Cucumber (Gy14) v2cgybcmoB009
CmoCh10G012700Melon (DHL92) v3.6.1cmomedB063
CmoCh10G012700Silver-seed gourdcarcmoB0416